Miyakogusa Predicted Gene

Lj0g3v0088659.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0088659.1 Non Characterized Hit- tr|D8U117|D8U117_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,43.69,6e-17,T-COMPLEX 11-RELATED,NULL; TESTIS-SPECIFIC PROTEIN
PBS13 (T-COMPLEX 11 ),T-complex 11;
Tcp11,T-compl,NODE_14568_length_2376_cov_188.041245.path3.1
         (554 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g006520.2 | T-complex protein | HC | chr2:595694-589033 | ...   833   0.0  
Medtr2g006520.1 | T-complex protein | HC | chr2:595681-588914 | ...   832   0.0  

>Medtr2g006520.2 | T-complex protein | HC | chr2:595694-589033 |
           20130731
          Length = 985

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/565 (74%), Positives = 470/565 (83%), Gaps = 18/565 (3%)

Query: 1   MLGLNEKSVKSMPFDQLALLIESASTLQTVKTLLDRLENRLKLSTTVAPRNHMSSLHNID 60
           +LG+NEKSVKS+PF+Q ALLIESASTLQTVKTLLDR E+RL++ T V P N+ +SL NID
Sbjct: 316 VLGINEKSVKSLPFEQFALLIESASTLQTVKTLLDRFESRLRVFTAVVPANYYTSLDNID 375

Query: 61  HLLKRAATPNKKATPRSSLRSRGVRKIDSVKRSNNSLAGLSRYPVRIVLCAYMILGHPDA 120
           HLLKR A+P K+ATPRSS RS   +K D+VK  NN L   SRY VR+VLCAYMILGHPDA
Sbjct: 376 HLLKRVASPKKRATPRSSTRS-PAKKSDTVKELNNRL---SRYQVRVVLCAYMILGHPDA 431

Query: 121 VFSGTGEREISLAKSAKEFVQMFELLIKVILEGPIQSSDEESLSTVMRRCTFRSQLSAFD 180
           VFS  GEREI+LAKSA+EFV+MFELLIK+I EGPI+SSDEES+S  ++RCTFRSQL+AFD
Sbjct: 432 VFSTMGEREIALAKSAQEFVKMFELLIKIIQEGPIKSSDEESVSASVKRCTFRSQLAAFD 491

Query: 181 KAWCSYLNCFVVWKVKDAQSLEEDLVRAACQLEASMIQTCKLTPEGVGSQLSHDMKAILH 240
           KAWCSYLNCFVVWKVKDA+SLE+DLVRAACQLEASMIQTCKLTPEGVG  +SHDMKAI H
Sbjct: 492 KAWCSYLNCFVVWKVKDARSLEDDLVRAACQLEASMIQTCKLTPEGVG--ISHDMKAIQH 549

Query: 241 QVTEDQKLLREKVLHLSGNAGIERMECALSETRSRYLSVQDNDSPMRFT-TQSV--SPTP 297
           QVTEDQKLLREKV+HLSG+AGIERME ALSETRSR   V+D+ SPM F  TQ +  SPTP
Sbjct: 550 QVTEDQKLLREKVMHLSGDAGIERMESALSETRSRSSRVKDSGSPMGFPMTQYLTPSPTP 609

Query: 298 ISNVAXXXXXXXXXX--------XXHKTSRVVRSLFKETNTSPIEXXXXXXXXXXXXQLG 349
           +S VA                    +KTSRVVRSLFKE++TSPIE            QL 
Sbjct: 610 LSTVASPTPLSTVASPSERNISNKSNKTSRVVRSLFKESDTSPIESSFSSPITSSNTQLS 669

Query: 350 SSSEKLAAENEFLVNEFVHEHHRSFADGLDVSDHIQNSIEGNIIKQTMEKAFWDGIMESV 409
           ++SEK  A NE LVNEF+HEHHRSFADG DVSDHIQNS+EG I KQTMEKAFWD +MESV
Sbjct: 670 TTSEKFVAPNEVLVNEFLHEHHRSFADGFDVSDHIQNSVEGKI-KQTMEKAFWDTVMESV 728

Query: 410 EQDQPNYDQIIQLMGEVRDEICEMAPKSWKEDIVAAIDLEILSQVLRSGNLDVDCLGKIL 469
           +QDQPNYDQIIQLM EVRDEICEMAP SWK+DI+AAIDL+ILSQVL+SG LDVD LGKIL
Sbjct: 729 KQDQPNYDQIIQLMEEVRDEICEMAPISWKDDIIAAIDLDILSQVLKSGKLDVDYLGKIL 788

Query: 470 RFSLGCLQKLSSPANEEIMKATHETLFSELSEICQSRDESNKSCVVALVKGLKFVLEQIQ 529
            FSL  LQKLS+PANEEI+KA H+ L  ELSEICQSRDESN +CVVALVKGL+FVLEQIQ
Sbjct: 789 DFSLVSLQKLSAPANEEIIKAKHKALLCELSEICQSRDESNNACVVALVKGLQFVLEQIQ 848

Query: 530 ILKKEISKARIRLMEPLIKGPAGLD 554
           ILKKEISKARIRLMEPL+KGPAGLD
Sbjct: 849 ILKKEISKARIRLMEPLLKGPAGLD 873


>Medtr2g006520.1 | T-complex protein | HC | chr2:595681-588914 |
           20130731
          Length = 1179

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/565 (74%), Positives = 470/565 (83%), Gaps = 18/565 (3%)

Query: 1   MLGLNEKSVKSMPFDQLALLIESASTLQTVKTLLDRLENRLKLSTTVAPRNHMSSLHNID 60
           +LG+NEKSVKS+PF+Q ALLIESASTLQTVKTLLDR E+RL++ T V P N+ +SL NID
Sbjct: 316 VLGINEKSVKSLPFEQFALLIESASTLQTVKTLLDRFESRLRVFTAVVPANYYTSLDNID 375

Query: 61  HLLKRAATPNKKATPRSSLRSRGVRKIDSVKRSNNSLAGLSRYPVRIVLCAYMILGHPDA 120
           HLLKR A+P K+ATPRSS RS   +K D+VK  NN L   SRY VR+VLCAYMILGHPDA
Sbjct: 376 HLLKRVASPKKRATPRSSTRS-PAKKSDTVKELNNRL---SRYQVRVVLCAYMILGHPDA 431

Query: 121 VFSGTGEREISLAKSAKEFVQMFELLIKVILEGPIQSSDEESLSTVMRRCTFRSQLSAFD 180
           VFS  GEREI+LAKSA+EFV+MFELLIK+I EGPI+SSDEES+S  ++RCTFRSQL+AFD
Sbjct: 432 VFSTMGEREIALAKSAQEFVKMFELLIKIIQEGPIKSSDEESVSASVKRCTFRSQLAAFD 491

Query: 181 KAWCSYLNCFVVWKVKDAQSLEEDLVRAACQLEASMIQTCKLTPEGVGSQLSHDMKAILH 240
           KAWCSYLNCFVVWKVKDA+SLE+DLVRAACQLEASMIQTCKLTPEGVG  +SHDMKAI H
Sbjct: 492 KAWCSYLNCFVVWKVKDARSLEDDLVRAACQLEASMIQTCKLTPEGVG--ISHDMKAIQH 549

Query: 241 QVTEDQKLLREKVLHLSGNAGIERMECALSETRSRYLSVQDNDSPMRF-TTQSV--SPTP 297
           QVTEDQKLLREKV+HLSG+AGIERME ALSETRSR   V+D+ SPM F  TQ +  SPTP
Sbjct: 550 QVTEDQKLLREKVMHLSGDAGIERMESALSETRSRSSRVKDSGSPMGFPMTQYLTPSPTP 609

Query: 298 ISNVAXXXXXXXXXX--------XXHKTSRVVRSLFKETNTSPIEXXXXXXXXXXXXQLG 349
           +S VA                    +KTSRVVRSLFKE++TSPIE            QL 
Sbjct: 610 LSTVASPTPLSTVASPSERNISNKSNKTSRVVRSLFKESDTSPIESSFSSPITSSNTQLS 669

Query: 350 SSSEKLAAENEFLVNEFVHEHHRSFADGLDVSDHIQNSIEGNIIKQTMEKAFWDGIMESV 409
           ++SEK  A NE LVNEF+HEHHRSFADG DVSDHIQNS+EG I KQTMEKAFWD +MESV
Sbjct: 670 TTSEKFVAPNEVLVNEFLHEHHRSFADGFDVSDHIQNSVEGKI-KQTMEKAFWDTVMESV 728

Query: 410 EQDQPNYDQIIQLMGEVRDEICEMAPKSWKEDIVAAIDLEILSQVLRSGNLDVDCLGKIL 469
           +QDQPNYDQIIQLM EVRDEICEMAP SWK+DI+AAIDL+ILSQVL+SG LDVD LGKIL
Sbjct: 729 KQDQPNYDQIIQLMEEVRDEICEMAPISWKDDIIAAIDLDILSQVLKSGKLDVDYLGKIL 788

Query: 470 RFSLGCLQKLSSPANEEIMKATHETLFSELSEICQSRDESNKSCVVALVKGLKFVLEQIQ 529
            FSL  LQKLS+PANEEI+KA H+ L  ELSEICQSRDESN +CVVALVKGL+FVLEQIQ
Sbjct: 789 DFSLVSLQKLSAPANEEIIKAKHKALLCELSEICQSRDESNNACVVALVKGLQFVLEQIQ 848

Query: 530 ILKKEISKARIRLMEPLIKGPAGLD 554
           ILKKEISKARIRLMEPL+KGPAGLD
Sbjct: 849 ILKKEISKARIRLMEPLLKGPAGLD 873