Miyakogusa Predicted Gene

Lj0g3v0088129.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0088129.1 Non Characterized Hit- tr|I3SXF4|I3SXF4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,89.13,0.00000000000001,UMP1,Proteasome maturation factor
UMP1,CUFF.4712.1
         (56 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g077240.1 | proteasome maturation factor UMP1 family prote...    72   8e-14
Medtr5g008020.2 | proteasome maturation factor UMP1 family prote...    66   8e-12
Medtr5g008020.1 | proteasome maturation factor UMP1 family prote...    65   1e-11

>Medtr4g077240.1 | proteasome maturation factor UMP1 family
          protein | HC | chr4:29591414-29595778 | 20130731
          Length = 142

 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 6  MEEASKTIPHQIGGVHNDLLLFGIHGVKSDIVDAHPLESSLAYV 49
          MEE SKTIPHQIGGVH D+L FG+ GVKSDIV AHPLESSL  V
Sbjct: 1  MEEESKTIPHQIGGVHTDVLRFGLPGVKSDIVGAHPLESSLQSV 44


>Medtr5g008020.2 | proteasome maturation factor UMP1 family
          protein | HC | chr5:1637522-1635130 | 20130731
          Length = 96

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 35/40 (87%)

Query: 6  MEEASKTIPHQIGGVHNDLLLFGIHGVKSDIVDAHPLESS 45
          MEE +K+I HQIGG+ ND L FG+HGVKS+IVD+HPL+SS
Sbjct: 1  MEEVAKSITHQIGGIQNDALRFGLHGVKSEIVDSHPLQSS 40


>Medtr5g008020.1 | proteasome maturation factor UMP1 family
          protein | HC | chr5:1637522-1634892 | 20130731
          Length = 123

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 35/40 (87%)

Query: 6  MEEASKTIPHQIGGVHNDLLLFGIHGVKSDIVDAHPLESS 45
          MEE +K+I HQIGG+ ND L FG+HGVKS+IVD+HPL+SS
Sbjct: 1  MEEVAKSITHQIGGIQNDALRFGLHGVKSEIVDSHPLQSS 40