Miyakogusa Predicted Gene

Lj0g3v0086919.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0086919.1 Non Characterized Hit- tr|A2C053|A2C053_PROM1
Uncharacterized integral membrane protein
OS=Prochloro,33.17,3e-18,seg,NULL; DUF2301,Protein of unknown function
DUF2301,CUFF.4643.1
         (296 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g099520.1 | integral membrane protein | HC | chr1:44953746...   333   1e-91

>Medtr1g099520.1 | integral membrane protein | HC |
           chr1:44953746-44951120 | 20130731
          Length = 283

 Score =  333 bits (854), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/265 (64%), Positives = 191/265 (72%), Gaps = 14/265 (5%)

Query: 38  RIPYSGC------RIKIGSVRYKALGDNRQGSLDDTAVYEGIYGPWTIDSSDVREGILYR 91
           RIP S        RI+IGSVR KA+G+N+Q       VY G+YGPWT+++ DV+E I YR
Sbjct: 26  RIPSSSLCQVPSPRIRIGSVRCKAVGENQQ------QVYNGVYGPWTVEAEDVKEVISYR 79

Query: 92  SGLVTXXXXXXXXXXXXFLPSNSALCDALKQNXXXXXXXXXXXXXXXXXXIHIYVSEIKR 151
           SGLVT            +LP N  L D LKQN                  IHIYV+EIKR
Sbjct: 80  SGLVTAAASFVIAASAAYLPDN--LSDTLKQNIDFFYVIGSGGLGLSLFLIHIYVTEIKR 137

Query: 152 ALQALWGLGILGSAIAYINLALPANENLIQCVVDNPPAVWLVGPLFAALTGLVFKEGLCY 211
            LQALWGLG+LGSA  YI LA PAN+ LIQ V+DNP AVWLVGPLFAALTGLVFKEGLCY
Sbjct: 138 TLQALWGLGVLGSAATYITLAQPANKTLIQYVIDNPSAVWLVGPLFAALTGLVFKEGLCY 197

Query: 212 GKLEAGVLTFVIPTVLLGHMTGLMDDGAKLTLLASWMALFVIFAGRKFTQPIKDDIGDKS 271
           GKLEAG LTF+IP +LLGH++GLMDDG KLTLLA W  LFVIFAGRKFTQPIKDDIGDKS
Sbjct: 198 GKLEAGALTFIIPILLLGHLSGLMDDGTKLTLLALWTGLFVIFAGRKFTQPIKDDIGDKS 257

Query: 272 VFMFNSLSDDERKTLIEKLEQQKTQ 296
           VF F SL DDE+K LIEKLEQQK+Q
Sbjct: 258 VFTFKSLRDDEKKALIEKLEQQKSQ 282