Miyakogusa Predicted Gene

Lj0g3v0064009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0064009.1 Non Characterized Hit- tr|I1LUI3|I1LUI3_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,41.54,0.0003,RALF,Rapid ALkalinization
Factor,gene.Ljchr0_pseudomol_20120828.path1.gene5738.1
         (72 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g090625.1 | RALF | HC | chr2:38782851-38782615 | 20130731        74   2e-14
Medtr2g090725.1 | RALF | HC | chr2:38874965-38875195 | 20130731        71   2e-13

>Medtr2g090625.1 | RALF | HC | chr2:38782851-38782615 | 20130731
          Length = 78

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 2  LVVFLSALLVCMLFTQDANA-KAISNPVMRKDTIPCSKRSPKDPCPLPIANPYNRGCHPE 60
          LVVFLSALL+C LFTQD  A   I NP M++DTIPC++R+P    P+  AN Y RGC  E
Sbjct: 8  LVVFLSALLICTLFTQDVEAVNIIGNPAMQRDTIPCNRRNPGSCNPVS-ANTYQRGCEIE 66

Query: 61 QRCRSTTTPS 70
           +C    TP 
Sbjct: 67 DKCVRGGTPE 76


>Medtr2g090725.1 | RALF | HC | chr2:38874965-38875195 | 20130731
          Length = 76

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 2  LVVFLSALLVCMLFTQDANA-KAISNPVMRKDTIPCSKRSPKDPCPLPIANPYNRGCHPE 60
          LV FLSALL+C   TQD  A   ISNP M++DTIPCSK+ P   C     N Y RGC  E
Sbjct: 8  LVAFLSALLICTFVTQDVEAGNVISNPAMQRDTIPCSKKDP-GSCNQKPTNTYQRGCETE 66

Query: 61 QRCRS 65
          ++CR 
Sbjct: 67 EKCRG 71