Miyakogusa Predicted Gene

Lj0g3v0061939.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0061939.1 tr|B9HD36|B9HD36_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_560198 PE=4
SV=1,44.79,2e-17,Fasciclin,FAS1 domain; Four repeated domains in the
Fasciclin I fam,FAS1 domain; FAS1 domain,FAS1 do,CUFF.2777.1
         (253 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g099150.1 | fasciclin domain protein | LC | chr4:41062867-...   266   1e-71
Medtr5g097370.1 | fasciclin-like arabinogalactan protein | HC | ...   108   7e-24
Medtr2g026520.1 | fasciclin-like arabinogalactan family protein,...    70   2e-12

>Medtr4g099150.1 | fasciclin domain protein | LC |
           chr4:41062867-41062127 | 20130731
          Length = 246

 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/224 (62%), Positives = 170/224 (75%), Gaps = 3/224 (1%)

Query: 25  QNLLAATEEMQRANYFTFVMLVKMSQPDTRLEGNVTFLMPNDRMLANMNLQEGYVSSFLL 84
           ++LLAAT+EMQRANYFTFVML+KMS PDTRLEGNVTFLMPNDRMLAN+ LQE  VS FLL
Sbjct: 25  RDLLAATDEMQRANYFTFVMLIKMSPPDTRLEGNVTFLMPNDRMLANVTLQEESVSKFLL 84

Query: 85  RHSIPSPLLFGTLEQFPTGTTIPTSLPNCMLRISNNGRRNFALNNVKIISPNLCVAGSSI 144
           RHSIPSPLLF TL+QFP+GTT+P+ LPNC++RISNNGR+NF +NNVKIISPN+CV+GSSI
Sbjct: 85  RHSIPSPLLFDTLKQFPSGTTVPSLLPNCIMRISNNGRKNFVVNNVKIISPNICVSGSSI 144

Query: 145 RCHGIDGVISESCISVYNNYSAPLAPSPIPCPNITDPSYKAXXXXXXXXXXXXXXXRDNL 204
           RCHGIDGV+S++C ++ NN++  + P P P  N T+ S +A                DN+
Sbjct: 145 RCHGIDGVLSQTC-TLENNHNHGV-PIPPPQYNNTNTSCEASPPIPSPSFPSPPYTGDNI 202

Query: 205 SPPTLIAPNPTEAN-IRPEKSGSPNKVSYYGSLSFVTCLMISLI 247
           +PP  IAP+PT +N  R E SGSP    Y   L F+ CLM S +
Sbjct: 203 NPPIWIAPSPTISNGERHEYSGSPRWFFYDAYLIFIVCLMFSFL 246


>Medtr5g097370.1 | fasciclin-like arabinogalactan protein | HC |
           chr5:42650583-42650002 | 20130731
          Length = 193

 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 4/153 (2%)

Query: 5   VFLVTXXXXXXISSVTPTDNQ-NLLAATEEMQRANYFTFVMLVKM--SQPDTRLEGNVTF 61
           V ++T        S T   NQ +L  A  +MQ  +Y+ FV+L+K+  S P+     ++TF
Sbjct: 6   VLILTLLAVGESQSTTAAFNQTDLQTAMSDMQSRSYYGFVILLKILNSLPNQMQNNDLTF 65

Query: 62  LMPNDRMLANMNLQEGYVSSFLLRHSIPSPLLFGTLEQFPTGTTIPTSLPNCMLRISNNG 121
           LMPND  L++ ++    +  FLL HSIP+PLL   L  FP G+ +P+ LP+ ++ I+NN 
Sbjct: 66  LMPNDEDLSHFSIAPEELHDFLLSHSIPTPLLLNHLLHFPNGSIVPSGLPSKVISITNNA 125

Query: 122 RRNFALNNVKIISPNLCVAGSSIRCHGIDGVIS 154
           R    +NN +I++PN+C   S I+CHGI   ++
Sbjct: 126 RAGLFVNNARIVTPNVC-QNSLIKCHGISAALT 157


>Medtr2g026520.1 | fasciclin-like arabinogalactan family protein,
           putative | HC | chr2:9590272-9589841 | 20130731
          Length = 143

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 8/105 (7%)

Query: 17  SSVTPTDNQNLLAATEEMQRANYFTFVMLVKM----SQPDTRLEGNVTFLMPNDRMLANM 72
           +++ P ++ +L AA  +M+   ++ F ML++M    SQP   L    TF MP DR L+  
Sbjct: 21  TTIHPFNHTDLQAAIGDMRAKIFYGFAMLLQMLNGTSQPIREL----TFFMPGDRELSAS 76

Query: 73  NLQEGYVSSFLLRHSIPSPLLFGTLEQFPTGTTIPTSLPNCMLRI 117
            +    +  F+L H+IP PL+F  L  FPTGT +P+ + + M+R+
Sbjct: 77  AISANGIEDFILSHAIPMPLVFNDLSHFPTGTLVPSGMSSKMMRM 121