Miyakogusa Predicted Gene

Lj6g3v2274810.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274810.1 Non Chatacterized Hit- tr|I1LTE9|I1LTE9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56950
PE,92.13,0,CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR,NULL;
seg,NULL; coiled-coil,NULL; no
description,NUL,NODE_37852_length_1272_cov_130.597488.path2.1
         (306 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation s...   490   e-139
AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation s...   490   e-139
AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation s...   490   e-139

>AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/307 (77%), Positives = 272/307 (88%), Gaps = 1/307 (0%)

Query: 1   MNGLTAPLNMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGEANEMGRLKQKLMTQFA 60
           MNGLTAPLNMQVHYISFSAHAD AQTS FL+EL PPNIILVHGEANEM RLKQKL+T+F 
Sbjct: 387 MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEFP 446

Query: 61  DRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMAPDD 120
           D NTKI+TPKNC+SVEMYFNS+K+AKTIG+LAEKTP+VG+TVSG+LVKKGFTYQIMAPD+
Sbjct: 447 DGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGDTVSGILVKKGFTYQIMAPDE 506

Query: 121 LHVFSQLSTANVTQRITIPHSGAFSIIQHRLKQIYESVEPSVDEESGVPTLLVHERVTVK 180
           LHVFSQLSTA VTQRITIP  GAF +I+HRL++I+ESVE S DEESG+P L VHERVTVK
Sbjct: 507 LHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHERVTVK 566

Query: 181 HESEKHISLHWPSDPISDMVSDSVVALILNMNRDVPKI-MDEADAIXXXXXXXXXXXXVM 239
            ESEKHISL W SDPISDMVSDS+VALILN++R+VPKI M+E DA+            V+
Sbjct: 567 QESEKHISLQWSSDPISDMVSDSIVALILNISREVPKIVMEEEDAVKSEEENGKKVEKVI 626

Query: 240 HALLVSLFGDVKVGENGKLIINIDGNVAELNKESGEVESENEGLKERVKTAFRRIQSSVK 299
           +ALLVSLFGDVK+GENGKL+I +DGNVA+L+KESGEVESE+ GLKERV+ AF RIQS+VK
Sbjct: 627 YALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRVAFERIQSAVK 686

Query: 300 PIPLSAS 306
           PIPLSAS
Sbjct: 687 PIPLSAS 693


>AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/307 (77%), Positives = 272/307 (88%), Gaps = 1/307 (0%)

Query: 1   MNGLTAPLNMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGEANEMGRLKQKLMTQFA 60
           MNGLTAPLNMQVHYISFSAHAD AQTS FL+EL PPNIILVHGEANEM RLKQKL+T+F 
Sbjct: 387 MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEFP 446

Query: 61  DRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMAPDD 120
           D NTKI+TPKNC+SVEMYFNS+K+AKTIG+LAEKTP+VG+TVSG+LVKKGFTYQIMAPD+
Sbjct: 447 DGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGDTVSGILVKKGFTYQIMAPDE 506

Query: 121 LHVFSQLSTANVTQRITIPHSGAFSIIQHRLKQIYESVEPSVDEESGVPTLLVHERVTVK 180
           LHVFSQLSTA VTQRITIP  GAF +I+HRL++I+ESVE S DEESG+P L VHERVTVK
Sbjct: 507 LHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHERVTVK 566

Query: 181 HESEKHISLHWPSDPISDMVSDSVVALILNMNRDVPKI-MDEADAIXXXXXXXXXXXXVM 239
            ESEKHISL W SDPISDMVSDS+VALILN++R+VPKI M+E DA+            V+
Sbjct: 567 QESEKHISLQWSSDPISDMVSDSIVALILNISREVPKIVMEEEDAVKSEEENGKKVEKVI 626

Query: 240 HALLVSLFGDVKVGENGKLIINIDGNVAELNKESGEVESENEGLKERVKTAFRRIQSSVK 299
           +ALLVSLFGDVK+GENGKL+I +DGNVA+L+KESGEVESE+ GLKERV+ AF RIQS+VK
Sbjct: 627 YALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRVAFERIQSAVK 686

Query: 300 PIPLSAS 306
           PIPLSAS
Sbjct: 687 PIPLSAS 693


>AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/307 (77%), Positives = 272/307 (88%), Gaps = 1/307 (0%)

Query: 1   MNGLTAPLNMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGEANEMGRLKQKLMTQFA 60
           MNGLTAPLNMQVHYISFSAHAD AQTS FL+EL PPNIILVHGEANEM RLKQKL+T+F 
Sbjct: 387 MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEFP 446

Query: 61  DRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMAPDD 120
           D NTKI+TPKNC+SVEMYFNS+K+AKTIG+LAEKTP+VG+TVSG+LVKKGFTYQIMAPD+
Sbjct: 447 DGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGDTVSGILVKKGFTYQIMAPDE 506

Query: 121 LHVFSQLSTANVTQRITIPHSGAFSIIQHRLKQIYESVEPSVDEESGVPTLLVHERVTVK 180
           LHVFSQLSTA VTQRITIP  GAF +I+HRL++I+ESVE S DEESG+P L VHERVTVK
Sbjct: 507 LHVFSQLSTATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHERVTVK 566

Query: 181 HESEKHISLHWPSDPISDMVSDSVVALILNMNRDVPKI-MDEADAIXXXXXXXXXXXXVM 239
            ESEKHISL W SDPISDMVSDS+VALILN++R+VPKI M+E DA+            V+
Sbjct: 567 QESEKHISLQWSSDPISDMVSDSIVALILNISREVPKIVMEEEDAVKSEEENGKKVEKVI 626

Query: 240 HALLVSLFGDVKVGENGKLIINIDGNVAELNKESGEVESENEGLKERVKTAFRRIQSSVK 299
           +ALLVSLFGDVK+GENGKL+I +DGNVA+L+KESGEVESE+ GLKERV+ AF RIQS+VK
Sbjct: 627 YALLVSLFGDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRVAFERIQSAVK 686

Query: 300 PIPLSAS 306
           PIPLSAS
Sbjct: 687 PIPLSAS 693