Miyakogusa Predicted Gene

Lj6g3v2274730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2274730.1 Non Chatacterized Hit- tr|G7LER4|G7LER4_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,36.13,1e-18,
,gene.g67743.t1.1
         (345 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78760.1 | Symbols:  | F-box/RNI-like superfamily protein | c...    58   1e-08
AT5G44980.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    49   4e-06
AT1G78840.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    49   4e-06
AT1G66300.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    49   6e-06

>AT1G78760.1 | Symbols:  | F-box/RNI-like superfamily protein |
           chr1:29615174-29616738 REVERSE LENGTH=452
          Length = 452

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 42/294 (14%)

Query: 1   MLSTRWKNLWKQLPGLILHPQDNFSTYKKFTKFLSRLLTL-RDGSAALHELRFWRGRPIQ 59
           +LS RW+NLW+ +PGL +   + F  Y  F  F+ R L L R+       LR+      +
Sbjct: 43  VLSKRWRNLWRYVPGLNVE-YNQFLDYNAFVSFVDRFLALDRESCFQSFRLRYDCDEEER 101

Query: 60  T-QLLKRMVKYVVSHNIQKLHLFVLCDIQDF---------PRCIFSSQTLTSLQLGVHSK 109
           T   +KR +  VV   ++ L      D+ D+         P  +++ ++L SL+L     
Sbjct: 102 TISNVKRWINIVVDQKLKVL------DVLDYTWGNEEVQIPPSVYTCESLVSLKL----- 150

Query: 110 GFTSEKMSLPKSLNLPALTGLYLENFSFSGNDIDRRRVEPFSALIKLNTLMIHNCTLSDD 169
              +  +  PK ++LP +  + L+   FS   +  + +   SA   L +L+I   ++ DD
Sbjct: 151 --CNVILPNPKVISLPLVKVIELDIVKFSNALVLEKIISSCSA---LESLIISRSSV-DD 204

Query: 170 ANILCISSKSLC---HLTVIEYSMVLYQIELSSPSLRAFAFEGIPSMPHIGSNLSSIEQV 226
            N+L +SS+SL    H+          ++ + +P L         +      N  S+ + 
Sbjct: 205 INVLRVSSRSLLSFKHIGNCSDGWDELEVAIDAPKLEYLNISDHSTAKFKMKNSGSLVEA 264

Query: 227 NINAAIWSVNQGIFQSEKW--GTFHSASFAIFSWLLKLSNIKSLTITTSTLQVL 278
            IN         IF  E+            I  +L ++S++K L I++ TL+V+
Sbjct: 265 KINI--------IFNMEELPHPNDRPKRKMIQDFLAEISSVKKLFISSHTLEVI 310


>AT5G44980.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:18160600-18162058
           FORWARD LENGTH=435
          Length = 435

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 137/320 (42%), Gaps = 43/320 (13%)

Query: 1   MLSTRWKNLWKQLPGLILHP-QDNFSTYKK-FTKFLSRLLTLRDGSA------ALHELRF 52
           +LS RW+NLW  +PGL L   Q  +   ++ F +F+ R +  +  S          + + 
Sbjct: 31  VLSKRWRNLWLNVPGLELFTLQFTYPDREEIFVRFMDRFMEFKCRSRLKKFMITYVDCKG 90

Query: 53  WRGRPIQTQLLKRMVKYVVSHNIQKLHLFVLC-DIQDFPR-CIFSSQTLTSLQLGVHSKG 110
           +R R      L  ++  +V H +Q L++F+   D  DF R  I+ S+TL SL+L  H+  
Sbjct: 91  YRDR------LMELIGTLVDHGLQHLYVFMHTFDRVDFKRQNIYKSKTLVSLKL--HNVE 142

Query: 111 FTSEKMSLPKSLNLPALTGLYLENFSFSGND---IDRRRVEPFSALIKLNTLMIHNCTLS 167
             +        ++LP L  L LEN    G D   +  + +   S L  L  +   +    
Sbjct: 143 LKNSDF----VVSLPCLKILKLENIC-HGEDGPLVVEKLISGCSVLEDLELIRPFDIRTH 197

Query: 168 DDANILCISSKSLCHLTV---IEYSMVLYQIELSSPSLRAFAFEGIPSMPHIGSNLSSIE 224
               +L +SS++L   T+   I      + +E+ +P L+    E   S   +  NLSS+ 
Sbjct: 198 KVLLLLRVSSQTLKSFTLHFAIYKDRTDFSVEIDAPRLKYMTVEQSQSDSIVVKNLSSLF 257

Query: 225 QVNINAAIWSVNQGIFQSEKWGTFHSASFAIFSWLLKLSNIKSLTITTSTLQVLSLFPLL 284
            ++I      +     +              + +L  +S++K + I   +LQ  S +   
Sbjct: 258 SIDIGTKFNPLRHEDLRMRN---------VFYDFLTGISSVKHMIICLWSLQRFSPYS-- 306

Query: 285 SEVKPPILNTLESLKIIQVQ 304
              KP ++   ++L  ++ Q
Sbjct: 307 ---KPGLIPKFQNLYHLKAQ 323


>AT1G78840.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr1:29639290-29640817
           REVERSE LENGTH=439
          Length = 439

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 21/146 (14%)

Query: 1   MLSTRWKNLWKQLPGLILHPQDNFSTYKKFTKFLSRLLTLRDGSAALHELRF-WRGRPIQ 59
           +LSTRW+ +W+++PGL L+ Q NF  YK    F++R L L D  + +++L+  + GR  +
Sbjct: 33  ILSTRWRYIWQRVPGLDLN-QTNFR-YKGLKGFVNRFLDL-DKKSLIYQLKLEFDGRKYE 89

Query: 60  TQ--LLKRMVKYVVSHNIQKLHLFVLCDIQDFPRCIFSSQTLTSLQL---GVHSKGFTSE 114
           T+  L  + V  VV+  +Q L +   C I+  P  I   +TL  L+L   G+ S      
Sbjct: 90  TEGSLFNKWVDSVVTRGVQHL-VNNYCPIK-LPGSISMCETLVHLKLVEVGIDSFD---- 143

Query: 115 KMSLPKSLNLPALTGLYLENFSFSGN 140
                 S++LP L  ++L +  FS  
Sbjct: 144 ------SVSLPRLETMHLLSVWFSSE 163


>AT1G66300.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr1:24716497-24718050
           REVERSE LENGTH=456
          Length = 456

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 130/293 (44%), Gaps = 38/293 (12%)

Query: 1   MLSTRWKNLWKQLPGLILHPQDNFSTYKKFTKFLSRLLTLRDGSAALHELRFW------R 54
           +LST+W+ LW+ +PGL L   D F+ Y  F  F+ R L+  +  + L++ +         
Sbjct: 56  VLSTKWRYLWRYVPGLDLDCSD-FTEYNTFVSFVDRFLS-TNTESYLNKFKLGFDCDLVG 113

Query: 55  GRPIQTQLLKRMVKYVVSHNIQKLHLFVLCDIQDFPRCIFSSQTLTSLQL-GVHSKGFTS 113
                   + R +  VV   +Q  HL +     + P  ++  ++L SL+L GV       
Sbjct: 114 DEETGNAQMARWINDVVKRKVQ--HLDLEWGALEIPPIVYVCKSLVSLKLCGV------- 164

Query: 114 EKMSLPKSLNLPALTGLYLENFSFSGNDIDRRRVEPFSALIKLNTLMIHNCTLSDDANIL 173
             + +P+ + LP++  + L+   F+ ND+    +     ++K  TL   N   +D+  +L
Sbjct: 165 -ILPIPEFVCLPSVKVIVLDWVKFA-NDLALEMLISGCLVLKSLTLCRSN---NDNVKVL 219

Query: 174 CISSKSLCHLTVI-------EYSMVLYQIELSSPSLRAFAFEGIPSMPHIGSNLSSIEQV 226
            + S+SL             EY  ++  +E+ +P L+        +   I  N SS+   
Sbjct: 220 RVRSQSLLSFNYNGPNTMGPEYEELI--VEIDTPKLQDLTLSHRMTASFIIKNRSSLVGA 277

Query: 227 NINAAIWSVNQGIFQSEKWGTFH-SASFAIFSWLLKLSNIKSLTITTSTLQVL 278
           +IN     +       EK+   +      I ++L+ +S +K++ I   TL+V+
Sbjct: 278 HIN-----IEFNFCFGEKFDPKNLPKREMIRNFLVGISGVKNMAIAACTLEVI 325