Miyakogusa Predicted Gene

Lj6g3v2272140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2272140.1 Non Chatacterized Hit- tr|I1K125|I1K125_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,33.5,0.000000000000003,FBA_1,F-box associated domain, type 1;
F_box_assoc_1: F-box protein interaction domain,F-box
associa,CUFF.60954.1
         (190 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    48   3e-06

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 37/198 (18%)

Query: 6   ICCDEQLFWVILWNPATRETSL--QSF-PLQIRREYDDSIPYSYCGFGYDHVSDTYKVMK 62
           +C       V L+NP T ++    ++F P  +  E D+   Y   GFG+D ++D YK++K
Sbjct: 173 VCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTY---GFGFDGLTDDYKLVK 229

Query: 63  VVEDAVLVFNMGDFDERQVGYFSPALICLENT----VVGVHFNGTLNWLVTSKINEYKIG 118
           +V  +  + +   +  +   +     +  E+       GVHFNG ++W+ T   +  ++ 
Sbjct: 230 LVATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTESRHNQRV- 288

Query: 119 LDTDENNIEWDNSSCMILFFDLNKEEFVRLVLLAIP-------YKFCDPHLGVLGECLCV 171
                           ++ FD+  EEF     + +P       ++F +  +G L   LCV
Sbjct: 289 ----------------VVAFDIQTEEFRE---MPVPDEAEDCSHRFSNFVVGSLNGRLCV 329

Query: 172 SVQDKQFNFMIWQMKEFG 189
                  +  IW M E+G
Sbjct: 330 VNSCYDVHDDIWVMSEYG 347