Miyakogusa Predicted Gene

Lj6g3v2045710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2045710.1 Non Chatacterized Hit- tr|B9SR76|B9SR76_RICCO
Carnitine racemase, putative OS=Ricinus communis
GN=RC,48.08,9e-19,ClpP/crotonase,NULL; ECH,Crotonase, core; seg,NULL;
no description,NULL,CUFF.60605.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14440.1 | Symbols: ATECI3, ECI3, HCD1 | 3-hydroxyacyl-CoA de...   112   5e-26
AT4G14430.1 | Symbols: IBR10, ATECI2, ECI2, ECHIB, PEC12 | indol...   111   1e-25
AT1G65520.1 | Symbols: ATECI1, ECI1, ECHIC, PEC11 | delta(3), de...    83   5e-17

>AT4G14440.1 | Symbols: ATECI3, ECI3, HCD1 | 3-hydroxyacyl-CoA
           dehydratase 1 | chr4:8306946-8307662 REVERSE LENGTH=238
          Length = 238

 Score =  112 bits (280), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/103 (51%), Positives = 68/103 (66%), Gaps = 1/103 (0%)

Query: 1   MCSLEKRDNLWVLTLTGDDQNRLSPTVIQXXXXXXXXXXXQATPGSVLITTATGRFFSNG 60
           MC+LEKR +L++LTLTG+D++R  P  I            Q+T GSVLITT  G+FFSNG
Sbjct: 1   MCTLEKRGDLFLLTLTGEDEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGKFFSNG 60

Query: 61  FDLTWARAAGSESAYDRLQSMVDPLRPAGAALVSPPMPTIAAV 103
           FDL WA++AG   A  R+  MV   +P  AAL+  PMPTIAA+
Sbjct: 61  FDLAWAQSAG-HGAIKRMHQMVKSFKPVLAALLDLPMPTIAAL 102


>AT4G14430.1 | Symbols: IBR10, ATECI2, ECI2, ECHIB, PEC12 |
           indole-3-butyric acid response 10 | chr4:8304910-8305632
           REVERSE LENGTH=240
          Length = 240

 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 1/101 (0%)

Query: 1   MCSLEKRDNLWVLTLTGDDQNRLSPTVIQXXXXXXXXXXXQATPGSVLITTATGRFFSNG 60
           MC+LEKR +L++LTLTGD ++R  P  I            Q+T GS+LITTA G+FFSNG
Sbjct: 1   MCTLEKRGDLFLLTLTGDGEHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFFSNG 60

Query: 61  FDLTWARAAGSES-AYDRLQSMVDPLRPAGAALVSPPMPTI 100
           FDL WA+ AGS++ A +RL  MV+  +P  AAL+  PMPTI
Sbjct: 61  FDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTI 101


>AT1G65520.1 | Symbols: ATECI1, ECI1, ECHIC, PEC11 | delta(3),
           delta(2)-enoyl CoA isomerase 1 | chr1:24361171-24361893
           REVERSE LENGTH=240
          Length = 240

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 62/104 (59%), Gaps = 6/104 (5%)

Query: 1   MCSLEKRDNLWVLTLTGDDQNRLSPTVIQXXXXXXXXXXXQ-ATPGSVLITTATGRFFSN 59
           MCSLEKRD L++L LTGD ++RL+PT++              +   SVLITT+ G+FFSN
Sbjct: 1   MCSLEKRDRLFILKLTGDGEHRLNPTLLDSLRSTINQIRSDPSFSQSVLITTSDGKFFSN 60

Query: 60  GFDLTWARAAGSESAYDRLQSMVDPLRPAGAALVSPPMPTIAAV 103
           G+DL  A +  S S       M   LR   A L+S PMPTIAAV
Sbjct: 61  GYDLALAESNPSLSVV-----MDAKLRSLVADLISLPMPTIAAV 99