Miyakogusa Predicted Gene

Lj6g3v2006410.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v2006410.3 tr|Q0E463|Q0E463_ORYSJ Os02g0134300 protein
OS=Oryza sativa subsp. japonica GN=Os02g0134300 PE=4
SV=,80.28,2e-18,seg,NULL; Zinc beta-ribbon,NULL; Elf1,Transcription
elongation factor 1; SUBFAMILY NOT NAMED,NULL; U,CUFF.60462.3
         (72 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46030.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   105   5e-24

>AT5G46030.1 | Symbols:  | unknown protein; CONTAINS InterPro
          DOMAIN/s: Protein of unknown function DUF701,
          zinc-binding putative (InterPro:IPR007808); Has 30201
          Blast hits to 17322 proteins in 780 species: Archae -
          12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
          Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
          (source: NCBI BLink). | chr5:18670531-18671138 FORWARD
          LENGTH=120
          Length = 120

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 56/72 (77%)

Query: 1  MGXXXXXXXXXXXXXMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTNI 60
          MG             MDKLDT+FSCPFCNHGSSVEC IDMK+LIG+A+C IC+ESFST I
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEAIDIYSE 72
          TAL+EAIDIYSE
Sbjct: 61 TALTEAIDIYSE 72