Miyakogusa Predicted Gene

Lj6g3v1887980.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1887980.1 tr|G7JX91|G7JX91_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_5g057710 PE=4
SV=1,36.89,0.000002,seg,NULL; F_box_assoc_1: F-box protein interaction
domain,F-box associated interaction domain,CUFF.60104.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    93   2e-19
AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    87   1e-17
AT3G07870.1 | Symbols:  | F-box and associated interaction domai...    75   3e-14
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    75   6e-14
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    75   6e-14
AT1G32600.1 | Symbols:  | F-box associated ubiquitination effect...    74   1e-13
AT4G22390.1 | Symbols:  | F-box associated ubiquitination effect...    70   2e-12
AT3G16210.1 | Symbols:  | F-box family protein | chr3:5494533-54...    62   3e-10
AT2G04920.1 | Symbols:  | F-box and associated interaction domai...    60   2e-09
AT1G54640.1 | Symbols:  | F-box family protein-related | chr1:20...    51   9e-07
AT2G43260.1 | Symbols:  | F-box and associated interaction domai...    48   5e-06
AT2G27520.1 | Symbols:  | F-box and associated interaction domai...    48   6e-06

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 130/272 (47%), Gaps = 45/272 (16%)

Query: 16  VVASCDGMLCITTNQQRDTVLWNPSIQKSKKLPTLEDSKP----YFGIRPIVYGFGYDHV 71
           +V S +G++CI+  +     L+NP+   SK+LP  E+ +P    Y       YGFG+D +
Sbjct: 165 IVGSSNGLVCISPGEGA-VFLYNPTTGDSKRLP--ENFRPKSVEYERDNFQTYGFGFDGL 221

Query: 72  LDNYKVV---AVFWDVRVAKIHTLGTDSWRMI---KYFPSSPSSDAGQLVRGTLNWLSVD 125
            D+YK+V   A   D+  A +++L  DSWR I    Y  +  S  +G    G ++W+  +
Sbjct: 222 TDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTE 281

Query: 126 SR-----IISFDLVKECCQELCLPDYGG-----------GGVNVTLEVLRDCLCIFCNAL 169
           SR     +++FD+  E  +E+ +PD              G +N  L V+  C  +     
Sbjct: 282 SRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVH---- 337

Query: 170 TFADVWVMNEYGNKESWTKLF--RVHDGFNPLCTSVLXXXXXXXXXXXMSKTGAIV-YNY 226
              D+WVM+EYG  +SW+++    ++    PLC++             +   G +V YN+
Sbjct: 338 --DDIWVMSEYGEAKSWSRIRINLLYRSMKPLCST------KNDEEVLLELDGDLVLYNF 389

Query: 227 INGTSRSPDTEYSTKISEGMVPYRYIESLISP 258
               S +       K+S+G     Y+ESLISP
Sbjct: 390 ETNASSNLGI-CGVKLSDGFEANTYVESLISP 420


>AT3G23880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:8622061-8623155
           REVERSE LENGTH=364
          Length = 364

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 123/262 (46%), Gaps = 31/262 (11%)

Query: 16  VVASCDGMLCITTNQQRDTVLWNPSIQKSKKLPT--LEDSKPYFGIRPIVYGFGYDHVLD 73
           VV +C G++C   +  +   LWNP+I+  ++L +  LE S        + YGFGYD   D
Sbjct: 112 VVGTCHGLVCFHVDYDKSLYLWNPTIKLQQRLSSSDLETSDDEC---VVTYGFGYDESED 168

Query: 74  NYKVVAVF---WDVRV-AKIHTLGTDSWRMIKYFPS----SPSSDAGQLVRGTLN----W 121
           +YKVVA+      V++  KI++     WR    FPS    +  S +G  + GTLN     
Sbjct: 169 DYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATS 228

Query: 122 LSVDSRIISFDLVKECCQELCLPD-YGGGGVNVTLEVLRDCLCIFCNAL-TFADVWVMNE 179
            S    IIS+D+ ++  +EL  P   G G   +TL  LR CL + C      ADVWVM E
Sbjct: 229 SSSSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMKE 288

Query: 180 YGNKESWTKLFRV---HDGFNPLCTSVLXXXXXXXXXXXMSKTGAIVYNYINGTSRSPDT 236
           +G   SW+KL  +    D   PL  S               ++G  +YN  NG    P  
Sbjct: 289 FGEVYSWSKLLSIPGLTDFVRPLWIS------DGLVVLLEFRSGLALYNCSNGRFHYP-- 340

Query: 237 EYSTKISEGMVPYRYIESLISP 258
             S  IS       Y+++++SP
Sbjct: 341 -VSNSISGCRDAKVYLKTMVSP 361


>AT3G07870.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:2510871-2512124
           FORWARD LENGTH=417
          Length = 417

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 43/215 (20%)

Query: 16  VVASCDGMLCITTNQQRDTV-LWNPSIQKSKKLPTLEDSKPYFGIRPIVYGFGYDHVLDN 74
           VV SC+G+LC++ +   D++ L+NP    S +LP  E S  Y   + +V+GFG+  +   
Sbjct: 119 VVGSCNGLLCLSDSLYNDSLYLYNPFTTNSLELP--ECSNKYHD-QELVFGFGFHEMTKE 175

Query: 75  YKVVAVFW-----------------------DVRVAKIHTLGTD---SWRMIKYFP---S 105
           YKV+ + +                       +V++  + +  TD   SWR +   P    
Sbjct: 176 YKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFV 235

Query: 106 SPSSDAGQLVRGTLNWLSV------DSRIISFDLVKECCQELCLPDYGG-GGVNVTLEVL 158
             SS+A  LV G L++++       D + +SFDL  E  +E+  PD GG    N  L  L
Sbjct: 236 KRSSEA--LVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNL 293

Query: 159 RDCLC-IFCNALTFADVWVMNEYGNKESWTKLFRV 192
           + CLC +        D+WVM  YG KESW K + +
Sbjct: 294 KGCLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSI 328


>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 48/220 (21%)

Query: 16  VVASCDGMLCITTNQQRDTVLWNPSIQKSKKLP----TLEDSKPYFGIRPIVYGFGYDHV 71
           V  S +G++ ++ N   D  ++NPS ++  +LP     L D     G   + YG GYD V
Sbjct: 91  VFGSSNGLIGLS-NSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGY--VFYGLGYDSV 147

Query: 72  LDNYKVVAVF---------------WDVRVAKIHTLGTDSWRMIKYFPSSPS-------- 108
            D+YKVV +                ++V   K+ +L  +SW+ I+   SS          
Sbjct: 148 SDDYKVVRMVQFKIDSEDELGCSFPYEV---KVFSLKKNSWKRIESVASSIQLLFYFYYH 204

Query: 109 ----SDAGQLVRGTLNW-------LSVDSRIISFDLVKECCQELCLPD-YGGGGVNVTLE 156
                  G L   +L+W       L   + I+ FDL  E  + +  P+    G V++ ++
Sbjct: 205 LLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMD 264

Query: 157 --VLRDCLCIFCN-ALTFADVWVMNEYGNKESWTKLFRVH 193
             VL  CLC+ CN   ++ DVW+M EY  ++SWTK+F V 
Sbjct: 265 IGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQ 304


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 48/220 (21%)

Query: 16  VVASCDGMLCITTNQQRDTVLWNPSIQKSKKLP----TLEDSKPYFGIRPIVYGFGYDHV 71
           V  S +G++ ++ N   D  ++NPS ++  +LP     L D     G   + YG GYD V
Sbjct: 91  VFGSSNGLIGLS-NSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGY--VFYGLGYDSV 147

Query: 72  LDNYKVVAVF---------------WDVRVAKIHTLGTDSWRMIKYFPSSPS-------- 108
            D+YKVV +                ++V   K+ +L  +SW+ I+   SS          
Sbjct: 148 SDDYKVVRMVQFKIDSEDELGCSFPYEV---KVFSLKKNSWKRIESVASSIQLLFYFYYH 204

Query: 109 ----SDAGQLVRGTLNW-------LSVDSRIISFDLVKECCQELCLPD-YGGGGVNVTLE 156
                  G L   +L+W       L   + I+ FDL  E  + +  P+    G V++ ++
Sbjct: 205 LLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMD 264

Query: 157 --VLRDCLCIFCN-ALTFADVWVMNEYGNKESWTKLFRVH 193
             VL  CLC+ CN   ++ DVW+M EY  ++SWTK+F V 
Sbjct: 265 IGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQ 304


>AT1G32600.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr1:11794802-11795683 FORWARD
           LENGTH=293
          Length = 293

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 16/173 (9%)

Query: 1   MRLDQPLNNPYQ-DSVVVASCDGMLCITTNQQRDTVLWNPSIQKSKKLPTLEDSKPYFGI 59
           ++L+ P   P Q + V + SC G++C+T     +  +W P+  K K++P ++      G 
Sbjct: 28  LKLNVPFTLPAQTEPVCILSCRGVICLTRKDNNELAIWKPTSTKFKRVPMIKR-----GQ 82

Query: 60  RPIVYGFGYDHVLDNYKVVAVFWDVRVAKIHTLGTDSWRMIKYFPSSP---SSDAGQLVR 116
              + GFGYD VLD+YK+V +    +   I T    SWR  K  PSS        G +V 
Sbjct: 83  TQNLLGFGYDRVLDDYKIVTII--DKKTYIFTFKESSWRESKLIPSSDCFFKERTGTVVD 140

Query: 117 GTLNWLS----VDSRIISFDLVKECCQELCLPDY-GGGGVNVTLEVLRDCLCI 164
             + W++     +  I+ FD V E   +L +P    G   N  L+V R  LC+
Sbjct: 141 NCMYWIANRFNKEKFILCFDFVNEEYSKLNVPMMLSGLEFNSWLDVSRGELCV 193


>AT4G22390.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr4:11813757-11815074 REVERSE
           LENGTH=402
          Length = 402

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 42/233 (18%)

Query: 1   MRLDQPLN-----NPYQD---SVVVASCDGMLCITTNQQRDTVLWNPSIQKSKKLPTLED 52
           + LD P N     +P Q    + V  S +G++ +  N   D  ++NPS +K  +LP    
Sbjct: 68  VELDSPENVSDIPHPLQAGGFTEVFGSFNGVIGLC-NSPVDLAIFNPSTRKIHRLPIEPI 126

Query: 53  SKPYFGI--RPIVYGFGYDHVLDNYKVVAV-----------FWDVRVAKIHTLGTDSWRM 99
             P   I    + YG GYD V D++KVV +           F      K+ +L  +SW+ 
Sbjct: 127 DFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKR 186

Query: 100 I------------KYFPSSPSSDAGQLVRGTLNWLSVDSR-------IISFDLVKECCQE 140
           +             Y+   P    G +V   L+W+    +       II +DL  +    
Sbjct: 187 VCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGV 246

Query: 141 LCLPDYGGGGVNVTLEVLRDCLCIFC-NALTFADVWVMNEYGNKESWTKLFRV 192
           L  P       N+ + VL  C+C+ C +  +  DVWV+ EY + +SWTKL+RV
Sbjct: 247 LSFPQELYIEDNMDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRV 299


>AT3G16210.1 | Symbols:  | F-box family protein |
           chr3:5494533-5495615 REVERSE LENGTH=360
          Length = 360

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 89/203 (43%), Gaps = 27/203 (13%)

Query: 2   RLDQPLNNPYQD-SVVVASCDGMLCITTNQQRDTVLWNPSIQKSKKLPT---LEDSKPYF 57
           +LD PL+    D S  V  CDG LC+T  +    ++WNP  ++ K +P     +DS    
Sbjct: 76  KLDFPLDQSMIDESTCVLHCDGTLCVTL-KNHTLMVWNPFSKQFKIVPNPGIYQDSN--- 131

Query: 58  GIRPIVYGFGYDHVLDNYKVVAVF--WDVRVAKIHTLGTDSW---RMIKYFPSSPSSDAG 112
                + GFGYD V D+YKVV      DV  A +    T SW     I Y         G
Sbjct: 132 -----ILGFGYDPVHDDYKVVTFIDRLDVSTAHVFEFRTGSWGESLRISYPDWHYRDRRG 186

Query: 113 QLVRGTLNWL----SVDSRIISFDLVKECCQELCLPDYGGGGVNVTLEVLRDCLCIFCNA 168
             +   L W+    S D  I+ F+L     ++L LP Y  G  +  L V    LCI    
Sbjct: 187 TFLDQYLYWIAYRSSADRFILCFNLSTHEYRKLPLPVYNQGVTSSWLGVTSQKLCITEYE 246

Query: 169 LTFADVW--VMNEYGNKESWTKL 189
           +   ++   VM + G   SW+K+
Sbjct: 247 MCKKEIRISVMEKTG---SWSKI 266


>AT2G04920.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr2:1726138-1727268
           FORWARD LENGTH=376
          Length = 376

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 32/210 (15%)

Query: 17  VASCDGMLCITTNQQRDTVLWNPSIQKSKKLPTLEDSKPYFGIRPIVYGFGYDHVLDNYK 76
           V  CDG+L  TT   R  ++WNP + +++ +    D KPY        G+  +    +YK
Sbjct: 99  VFHCDGLLLCTTKDHR-LLVWNPCLGETRWINFENDYKPY---SRFSLGYKNNKSCRSYK 154

Query: 77  VVAVFWDVRVA--------KIHTLGTDSWRM------IKYFPSSPSSDAGQLVRGTLNWL 122
           ++  FW   +          I+   TDSWR+      + YF     S+ G   +G   WL
Sbjct: 155 ILR-FWTSYLTPNHIGLRYNIYEFTTDSWRVLIDKVSLNYFL--IESENGVSFKGNTYWL 211

Query: 123 SVDSR---IISFDLVKECCQELCLPDYGGGGVNVTLEVLRDCLCI----FCNALTFADVW 175
           ++D     ++ FD   E  + LCLP        V   V  + L +    FC++    D+W
Sbjct: 212 ALDEETNFLLGFDFTMERFKRLCLPSNKNCDTMVLSVVREEKLSVSHQNFCSSK--MDIW 269

Query: 176 VMNEYGNKE--SWTKLFRVHDGFNPLCTSV 203
           + N   ++   SW + F V      +C S+
Sbjct: 270 MTNRIDSETAMSWKRYFSVEFKILSMCHSL 299


>AT1G54640.1 | Symbols:  | F-box family protein-related |
           chr1:20403892-20404807 REVERSE LENGTH=245
          Length = 245

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 1   MRLDQPLNNPYQ-DSVVVASCDGMLCITTNQQRDTVLWNPSIQKSKKLPTLEDSKPYFGI 59
           ++LD P   P + + V +  C GM+C+T  +  D  +W P  ++ K++P +       G 
Sbjct: 28  LKLDLPFTLPAETEPVCILHCRGMMCLTLKENNDLAIWKPGSEEFKRIPMV-----IPGQ 82

Query: 60  RPIVYGFGYDHVLDNYKVVA 79
              + GFGYD + ++YK+V 
Sbjct: 83  TTNLLGFGYDRISNDYKIVT 102


>AT2G43260.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr2:17983744-17985089
           REVERSE LENGTH=420
          Length = 420

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 28/197 (14%)

Query: 19  SCDGMLCITTNQQRDTVLWNPSIQKSKKLPTLEDSKPYFGI------RP--IVYGFGYDH 70
           +C G++C    +Q   ++ NPS  + ++ P+  +    F I       P   V GFG D 
Sbjct: 102 TCQGVICFP--EQDWIIVLNPSTSQLRRFPSGLNHNCRFRIGLWKTFSPGNWVMGFGRDK 159

Query: 71  VLDNYKVVAV---FWDVRVAK------IHTLGTDSWRMIKYFPSSPSSDAGQL-VRGTLN 120
           V   YKVV +   FW VR  +      +  + T  WR +   P   +  +  + V G++ 
Sbjct: 160 VNGRYKVVRMSFAFWRVRQEEPVVECGVLDVDTGEWRKLSPPPYVVNVGSKSVCVNGSIY 219

Query: 121 WLSVDS--RIISFDLVKECCQELCLPDYGGGGVNVTLEVLRDCLCIFCNALT---FADVW 175
           WL + +  RI++ DL KE   ++ +P      V+  +  L D L +    ++     +VW
Sbjct: 220 WLHIQTVYRILALDLHKEEFHKVPVPP-TQITVDTQMVNLEDRLVLAITRVSPEWILEVW 278

Query: 176 VMNEYGNKESWTKLFRV 192
            M+ Y  KE W+K + +
Sbjct: 279 GMDTY--KEKWSKTYSI 293


>AT2G27520.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr2:11762061-11763104
           FORWARD LENGTH=347
          Length = 347

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 17/191 (8%)

Query: 17  VASCDGMLCITTNQQRDT--VLWNPSIQKSKKLPTLEDSKPYFGIRPIVYGFGYDHV--- 71
           V  C+G+L  +T +   T  V+ NP   +++    +E    Y     I  G+G +     
Sbjct: 83  VFHCNGLLLCSTEEGNKTKLVVVNPCTGQTR---WIEPRTDYNYNHDIALGYGNNSTKKS 139

Query: 72  LDNYKVVAVFWDVRVAKIHTLGTDSWRMI-KYFPSSPSSDAGQL-VRGTLNWLSVDS-RI 128
            D+YK++ + +  ++ +I  L ++SWR++ K  P+      G +  +G   WLS     I
Sbjct: 140 YDSYKILRITYGCKLVEIFELKSNSWRVLSKVHPNVEKHYYGGVSFKGNTYWLSYTKFNI 199

Query: 129 ISFDLVKECCQELCLPD-YGGGGVNVTLEVLRDCLCIFCNA---LTFADVWVMNEYGNKE 184
           +SFD   E  + + LP  Y  G V + L V+R+   +   +   +    +W+ N+   + 
Sbjct: 200 LSFDFTTETFRSVPLPFLYQDGFVTLALSVVREEQLLLLRSRFDMGQVGIWMCNKIDTET 259

Query: 185 --SWTKLFRVH 193
             SW+K F + 
Sbjct: 260 VLSWSKSFTLE 270