Miyakogusa Predicted Gene

Lj6g3v1764530.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1764530.1 Non Chatacterized Hit- tr|O49642|O49642_ARATH
Putative uncharacterized protein AT4g22370 OS=Arabidop,49.44,1e-18,no
description,NULL,CUFF.59909.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22370.1 | Symbols:  | unknown protein; Has 12 Blast hits to ...   103   1e-22
AT5G41470.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    77   6e-15
AT1G71480.1 | Symbols:  | Nuclear transport factor 2 (NTF2) fami...    60   2e-09

>AT4G22370.1 | Symbols:  | unknown protein; Has 12 Blast hits to 12
           proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 12; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:11810169-11810957 REVERSE LENGTH=130
          Length = 130

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 58/79 (73%)

Query: 135 LEFFSSLISMLGDNIQIVVKPTLHDGMNVGVQWKFEWNKIHFPLGKGFSFHICQSYQGKA 194
           + FF  LI  LG +I+I+VKPT  DGM VGVQW+ E +K H  LGKGFSFHIC  YQGK 
Sbjct: 1   MAFFYWLIMKLGKDIKIIVKPTFKDGMTVGVQWQLECDKSHIQLGKGFSFHICHMYQGKL 60

Query: 195 VIRNIEMVMEPLLYLKPFR 213
           +I+N+EM MEP+ +++  R
Sbjct: 61  LIKNVEMFMEPIFHIEHLR 79


>AT5G41470.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr5:16593953-16595419 FORWARD LENGTH=277
          Length = 277

 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 90  DAVMKLYSAFKNKNTNELSEILADECSCVCNFLSFFQTFQGKTQVLEFFSSLISMLGDNI 149
           DAVMK YS+   KN ++LS  ++ +C    +  SF + F+GK + +EFF  L+  +G N+
Sbjct: 77  DAVMKFYSSINEKNQDQLSSCISSDC--FIDDFSFPKPFRGKQEAMEFFEELVKSMGQNV 134

Query: 150 QIVVKPTLH-DGMNVGVQWKFEWNKIHFPLGKGFSFHICQSYQGKAVIRNIEMVME 204
           +  V+     DG +  V W  EW     P  +G SF+      G+ VIRN  +++E
Sbjct: 135 KFCVENVCEGDGHSAAVNWHLEWKGRKIPFTRGCSFYEFIDEGGRLVIRNARILIE 190


>AT1G71480.1 | Symbols:  | Nuclear transport factor 2 (NTF2) family
           protein | chr1:26932079-26933086 FORWARD LENGTH=216
          Length = 216

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 86  NQALDAVMKLYSAFKNKNTNELSEILADECSCVCNFLSFFQTFQGKTQVLEFFSSLISML 145
             A + V   Y+A    + + +++++A +C  V   L F   F G+  +L+FF   I   
Sbjct: 69  TSASEVVSSFYAAVNVHDLSSVTDLIAQDC--VYEDLVFSSPFVGRKAILDFFGKFIEST 126

Query: 146 GDNIQIVVKP-TLHDGMNVGVQWKFEWNKIHFPLGKGFSFHICQSYQGKAVIRNIEMVME 204
             ++Q V+   +  D   VGV W  EW   +FP  KG SF+  +   GK  I      +E
Sbjct: 127 STDLQFVIDDISTEDSSAVGVSWHLEWKGKNFPFSKGCSFYRLEVIDGKRQIVYGRDCVE 186

Query: 205 PLL 207
           P +
Sbjct: 187 PAI 189