Miyakogusa Predicted Gene

Lj6g3v1629870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1629870.1 Non Chatacterized Hit- tr|B9FG33|B9FG33_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,34.31,0.000000000000004,RNASE_3_1,Ribonuclease III domain; no
description,Ribonuclease III domain; Ribonuclease III
family,R,NODE_67609_length_564_cov_73.893616.path1.1
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 ...   236   8e-63
AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 | chr3:768020...   236   8e-63
AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525 ...   235   9e-63
AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60...   135   2e-32
AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FO...   135   2e-32
AT5G20320.1 | Symbols: DCL4, ATDCL4 | dicer-like 4 | chr5:685957...   122   8e-29
AT5G20320.2 | Symbols: DCL4 | dicer-like 4 | chr5:6859571-686906...   122   9e-29
AT3G43920.3 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535...   119   9e-28
AT3G43920.1 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535...   119   9e-28
AT3G43920.2 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535...   119   1e-27
AT4G15417.1 | Symbols: ATRTL1, RTL1 | RNAse II-like 1 | chr4:882...    69   1e-12
AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 | chr5:...    64   5e-11
AT3G20420.1 | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein 2...    62   1e-10

>AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833
            REVERSE LENGTH=1388
          Length = 1388

 Score =  236 bits (601), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 132/166 (79%)

Query: 2    RNLKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHI 61
            RNLKRK +ADVVE+LIGA+L  GGE AAL+FM+WVGIKV F     +R      EKLV++
Sbjct: 1090 RNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNV 1149

Query: 62   SLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPG 121
              +ES L YSF D SLLVEALTHGSYM+PE+P CYQRLEFLGDS+LDYLIT H+Y+KYP 
Sbjct: 1150 GYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPC 1209

Query: 122  MSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITEA 167
            +SPG LTDMR+ASVNN+CYA  A+KA LHKHIL+ S  LHKHI+  
Sbjct: 1210 LSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRT 1255


>AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 |
            chr3:768020-774833 REVERSE LENGTH=1388
          Length = 1388

 Score =  236 bits (601), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 132/166 (79%)

Query: 2    RNLKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHI 61
            RNLKRK +ADVVE+LIGA+L  GGE AAL+FM+WVGIKV F     +R      EKLV++
Sbjct: 1090 RNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNV 1149

Query: 62   SLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPG 121
              +ES L YSF D SLLVEALTHGSYM+PE+P CYQRLEFLGDS+LDYLIT H+Y+KYP 
Sbjct: 1150 GYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPC 1209

Query: 122  MSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITEA 167
            +SPG LTDMR+ASVNN+CYA  A+KA LHKHIL+ S  LHKHI+  
Sbjct: 1210 LSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRT 1255


>AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525
            REVERSE LENGTH=1374
          Length = 1374

 Score =  235 bits (600), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 132/166 (79%)

Query: 2    RNLKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHI 61
            RNLKRK +ADVVE+LIGA+L  GGE AAL+FM+WVGIKV F     +R      EKLV++
Sbjct: 1076 RNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNV 1135

Query: 62   SLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPG 121
              +ES L YSF D SLLVEALTHGSYM+PE+P CYQRLEFLGDS+LDYLIT H+Y+KYP 
Sbjct: 1136 GYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPC 1195

Query: 122  MSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITEA 167
            +SPG LTDMR+ASVNN+CYA  A+KA LHKHIL+ S  LHKHI+  
Sbjct: 1196 LSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRT 1241


>AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60,
            ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
            LENGTH=1909
          Length = 1909

 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 104/170 (61%), Gaps = 6/170 (3%)

Query: 2    RNLKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYER-----HFSTCVE 56
            R L  K +ADVVEALIG + + GG+ AA   M W+GI V  D    +      +    V 
Sbjct: 1495 RVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVL 1554

Query: 57   KLVHISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMY 116
            K +    LE  LKY F++  LLVEA+TH S     V +CYQRLEF+GD++LD+LIT H++
Sbjct: 1555 KSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLF 1613

Query: 117  EKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
              Y  + PG+LTD+RAA+VNN+ +A  A+K  LH ++ H S  L K I E
Sbjct: 1614 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIRE 1663



 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 75   SSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPGMSPGQLTDMRAAS 134
            +S ++EALT  S    +   CY+R E LGD+ L ++++  ++ KYP    GQLT MR   
Sbjct: 1356 TSKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQM 1412

Query: 135  VNNDCYAWSAIKAGLHKHI 153
            V+N      A+  GL  +I
Sbjct: 1413 VSNMVLYQFALVKGLQSYI 1431


>AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
            LENGTH=1910
          Length = 1910

 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 104/170 (61%), Gaps = 6/170 (3%)

Query: 2    RNLKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYER-----HFSTCVE 56
            R L  K +ADVVEALIG + + GG+ AA   M W+GI V  D    +      +    V 
Sbjct: 1496 RVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTLKNVNVPESVL 1555

Query: 57   KLVHISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMY 116
            K +    LE  LKY F++  LLVEA+TH S     V +CYQRLEF+GD++LD+LIT H++
Sbjct: 1556 KSIDFVGLERALKYEFKEKGLLVEAITHASRPSSGV-SCYQRLEFVGDAVLDHLITRHLF 1614

Query: 117  EKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
              Y  + PG+LTD+RAA+VNN+ +A  A+K  LH ++ H S  L K I E
Sbjct: 1615 FTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIRE 1664



 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 75   SSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPGMSPGQLTDMRAAS 134
            +S ++EALT  S    +   CY+R E LGD+ L ++++  ++ KYP    GQLT MR   
Sbjct: 1357 TSKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQM 1413

Query: 135  VNNDCYAWSAIKAGLHKHI 153
            V+N      A+  GL  +I
Sbjct: 1414 VSNMVLYQFALVKGLQSYI 1432


>AT5G20320.1 | Symbols: DCL4, ATDCL4 | dicer-like 4 |
            chr5:6859571-6869068 REVERSE LENGTH=1702
          Length = 1702

 Score =  122 bits (307), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 100/171 (58%), Gaps = 12/171 (7%)

Query: 4    LKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHISL 63
            L +K IADVVEAL+GAFL+  G   A+ F+ W+G+ V F+ +  +     C+    ++ L
Sbjct: 1230 LYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQ---DACIASRRYLPL 1286

Query: 64   --------LESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHM 115
                    LE++L Y F    LLV+A  H SY       CYQRLEFLGD++LDYL+T + 
Sbjct: 1287 TTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNR-HGGGCYQRLEFLGDAVLDYLMTSYF 1345

Query: 116  YEKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
            +  +P + PGQLTD+R+ SVNN+  A  A+   L + +   S  LH+ I +
Sbjct: 1346 FTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIED 1396


>AT5G20320.2 | Symbols: DCL4 | dicer-like 4 | chr5:6859571-6869068
            REVERSE LENGTH=1688
          Length = 1688

 Score =  122 bits (307), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 100/171 (58%), Gaps = 12/171 (7%)

Query: 4    LKRKIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHISL 63
            L +K IADVVEAL+GAFL+  G   A+ F+ W+G+ V F+ +  +     C+    ++ L
Sbjct: 1216 LYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQ---DACIASRRYLPL 1272

Query: 64   --------LESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHM 115
                    LE++L Y F    LLV+A  H SY       CYQRLEFLGD++LDYL+T + 
Sbjct: 1273 TTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNR-HGGGCYQRLEFLGDAVLDYLMTSYF 1331

Query: 116  YEKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
            +  +P + PGQLTD+R+ SVNN+  A  A+   L + +   S  LH+ I +
Sbjct: 1332 FTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIED 1382


>AT3G43920.3 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
            chr3:15753548-15760830 FORWARD LENGTH=1570
          Length = 1570

 Score =  119 bits (298), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 97/172 (56%), Gaps = 22/172 (12%)

Query: 7    KIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHISL--- 63
            K ++D  EALIGA+ +SGG +A+L  M W+GI V FD        +  VE +  +SL   
Sbjct: 1129 KSVSDCAEALIGAYYVSGGLSASLHMMKWLGIDVDFDP-------NLVVEAINRVSLRCY 1181

Query: 64   ---------LESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVH 114
                     LE K+++ F    LL EA+TH S         Y+RLEFLGDS+LD+LIT H
Sbjct: 1182 IPKEDELIELERKIQHEFSAKFLLKEAITHSSL---RESYSYERLEFLGDSVLDFLITRH 1238

Query: 115  MYEKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
            ++  Y    PG++TD+R+A VNN+ +A  A+K  LH H+   +  L   I +
Sbjct: 1239 LFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQIND 1290


>AT3G43920.1 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
            chr3:15753548-15760830 FORWARD LENGTH=1531
          Length = 1531

 Score =  119 bits (298), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 97/172 (56%), Gaps = 22/172 (12%)

Query: 7    KIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHISL--- 63
            K ++D  EALIGA+ +SGG +A+L  M W+GI V FD        +  VE +  +SL   
Sbjct: 1090 KSVSDCAEALIGAYYVSGGLSASLHMMKWLGIDVDFDP-------NLVVEAINRVSLRCY 1142

Query: 64   ---------LESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVH 114
                     LE K+++ F    LL EA+TH S         Y+RLEFLGDS+LD+LIT H
Sbjct: 1143 IPKEDELIELERKIQHEFSAKFLLKEAITHSSL---RESYSYERLEFLGDSVLDFLITRH 1199

Query: 115  MYEKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
            ++  Y    PG++TD+R+A VNN+ +A  A+K  LH H+   +  L   I +
Sbjct: 1200 LFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQIND 1251


>AT3G43920.2 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
            chr3:15753548-15760830 FORWARD LENGTH=1580
          Length = 1580

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 97/172 (56%), Gaps = 22/172 (12%)

Query: 7    KIIADVVEALIGAFLISGGENAALLFMDWVGIKVCFDIIPYERHFSTCVEKLVHISL--- 63
            K ++D  EALIGA+ +SGG +A+L  M W+GI V FD        +  VE +  +SL   
Sbjct: 1139 KSVSDCAEALIGAYYVSGGLSASLHMMKWLGIDVDFDP-------NLVVEAINRVSLRCY 1191

Query: 64   ---------LESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVH 114
                     LE K+++ F    LL EA+TH S         Y+RLEFLGDS+LD+LIT H
Sbjct: 1192 IPKEDELIELERKIQHEFSAKFLLKEAITHSSL---RESYSYERLEFLGDSVLDFLITRH 1248

Query: 115  MYEKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
            ++  Y    PG++TD+R+A VNN+ +A  A+K  LH H+   +  L   I +
Sbjct: 1249 LFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQIND 1300


>AT4G15417.1 | Symbols: ATRTL1, RTL1 | RNAse II-like 1 |
           chr4:8821759-8822991 FORWARD LENGTH=264
          Length = 264

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)

Query: 56  EKLVHISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHM 115
           ++L+ I  LE  L Y F+D SLL++A T  SY + +    Y+ LE LGDSIL+  I    
Sbjct: 24  DQLMEIESLEKILNYKFKDKSLLLKAFTDASY-VDDKSESYELLELLGDSILNMGIIYDF 82

Query: 116 YEKYPGMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
            + YP  +PG LT +RA +V+ +  A  A+   L+ ++ H    L + I E
Sbjct: 83  IKLYPKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILE 133


>AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 |
           chr5:18260441-18264346 FORWARD LENGTH=957
          Length = 957

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 61  ISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYP 120
           +  +E  L YSF + +LL EA+T  S +       + RLEF GDSIL+   T ++   YP
Sbjct: 4   VEAVEKILNYSFVNKTLLKEAITQKSPL-------FDRLEFFGDSILEVAFTNYICHTYP 56

Query: 121 GMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHI 164
            +   +L D+R A+V+N+ +A  A+   LH  +L  +  L K +
Sbjct: 57  NLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKV 100



 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 6/94 (6%)

Query: 61  ISLLESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYP 120
           +  +E  L YSF + +LL E LTH +  L      +Q L F+G+S L    T H+Y  YP
Sbjct: 415 VEAVEKILNYSFVNKTLLKELLTHNNSPL------FQGLMFVGESALSLAFTKHLYLTYP 468

Query: 121 GMSPGQLTDMRAASVNNDCYAWSAIKAGLHKHIL 154
            + P  L+ +R A+  +D YA  A+K G+++  +
Sbjct: 469 MLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFI 502


>AT3G20420.1 | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein 2 |
           chr3:7119371-7120895 REVERSE LENGTH=391
          Length = 391

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 64  LESKLKYSFRDSSLLVEALTHGSYMLPEVPTCYQRLEFLGDSILDYLITVHMYEKYPGMS 123
           +E  L Y F + SLL EA+TH S    + P+ Y+RLEF+GDS +   I+ ++Y  YP + 
Sbjct: 63  VEKILNYKFSNKSLLKEAITHTSCT--DFPS-YERLEFIGDSAIGLAISNYLYLTYPSLE 119

Query: 124 PGQLTDMRAASVNNDCYAWSAIKAGLHKHILHVSQDLHKHITE 166
           P  L+ +RAA+V+ +  A  ++  GL+  +   +  L + + E
Sbjct: 120 PHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKE 162