Miyakogusa Predicted Gene
- Lj6g3v1629840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v1629840.1 tr|B9IKF4|B9IKF4_POPTR Dicer-like protein
(Fragment) OS=Populus trichocarpa GN=DCL904 PE=4
SV=1,38.89,3e-19,RNase III domain-like,Ribonuclease III domain;
Ribonuclease_3,Ribonuclease III domain;
PAZ,Argonaute,NODE_76815_length_575_cov_56.106087.path1.1
(184 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 ... 178 2e-45
AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 | chr3:768020... 178 2e-45
AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525 ... 178 2e-45
AT5G20320.1 | Symbols: DCL4, ATDCL4 | dicer-like 4 | chr5:685957... 112 1e-25
AT5G20320.2 | Symbols: DCL4 | dicer-like 4 | chr5:6859571-686906... 112 2e-25
AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60... 110 4e-25
AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FO... 110 4e-25
AT3G43920.1 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535... 97 6e-21
AT3G43920.3 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535... 97 6e-21
AT3G43920.2 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535... 97 6e-21
>AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833
REVERSE LENGTH=1388
Length = 1388
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 121/173 (69%), Gaps = 4/173 (2%)
Query: 11 KLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKDREASKTFVEL 70
K SG+ TY Y+++ HG QL F + LL + IF + +Y H K++K++E + FVEL
Sbjct: 868 KRNSGDQ-TYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDREFVEL 926
Query: 71 PPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVLEAI 130
PPELC VI+SPIS IYS++FIPS+M R+ESLL+A NLK + I +KVLEAI
Sbjct: 927 PPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSIPKV---NIPTIKVLEAI 983
Query: 131 TTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISNA 183
TTK+C++ FH ESLETLGDSFLKYAV Q LFQ HHEGLL+ K+ +ISN
Sbjct: 984 TTKKCEDQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNV 1036
>AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 |
chr3:768020-774833 REVERSE LENGTH=1388
Length = 1388
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 121/173 (69%), Gaps = 4/173 (2%)
Query: 11 KLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKDREASKTFVEL 70
K SG+ TY Y+++ HG QL F + LL + IF + +Y H K++K++E + FVEL
Sbjct: 868 KRNSGDQ-TYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDREFVEL 926
Query: 71 PPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVLEAI 130
PPELC VI+SPIS IYS++FIPS+M R+ESLL+A NLK + I +KVLEAI
Sbjct: 927 PPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSIPKV---NIPTIKVLEAI 983
Query: 131 TTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISNA 183
TTK+C++ FH ESLETLGDSFLKYAV Q LFQ HHEGLL+ K+ +ISN
Sbjct: 984 TTKKCEDQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNV 1036
>AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525
REVERSE LENGTH=1374
Length = 1374
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/173 (54%), Positives = 121/173 (69%), Gaps = 4/173 (2%)
Query: 11 KLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKDREASKTFVEL 70
K SG+ TY Y+++ HG QL F + LL + IF + +Y H K++K++E + FVEL
Sbjct: 854 KRNSGDQ-TYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDREFVEL 912
Query: 71 PPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVLEAI 130
PPELC VI+SPIS IYS++FIPS+M R+ESLL+A NLK + I +KVLEAI
Sbjct: 913 PPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSIPKV---NIPTIKVLEAI 969
Query: 131 TTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISNA 183
TTK+C++ FH ESLETLGDSFLKYAV Q LFQ HHEGLL+ K+ +ISN
Sbjct: 970 TTKKCEDQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNV 1022
>AT5G20320.1 | Symbols: DCL4, ATDCL4 | dicer-like 4 |
chr5:6859571-6869068 REVERSE LENGTH=1702
Length = 1702
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 111/184 (60%), Gaps = 8/184 (4%)
Query: 5 DGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQE--KDRE 62
+G SP+K S + ++ K +G +L Q LL+ K + V+N H Q + +E
Sbjct: 980 NGFSPVKESSTK--SHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHNRMQTNLEPQE 1037
Query: 63 ASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIH 122
+ F+E+PPEL + + +S S S +PSIMHR+E+LLVA+ LK H+ S + EI
Sbjct: 1038 LDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELK-HVLSASIPEIA 1096
Query: 123 AL---KVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKI 179
+ +VLEA+TT++C E E LE LGD+FLK+AV++HLF + + EG LT +R +
Sbjct: 1097 EVSGHRVLEALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNV 1156
Query: 180 ISNA 183
++N+
Sbjct: 1157 VNNS 1160
>AT5G20320.2 | Symbols: DCL4 | dicer-like 4 | chr5:6859571-6869068
REVERSE LENGTH=1688
Length = 1688
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 111/184 (60%), Gaps = 8/184 (4%)
Query: 5 DGTSPLKLKSGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQE--KDRE 62
+G SP+K S + ++ K +G +L Q LL+ K + V+N H Q + +E
Sbjct: 966 NGFSPVKESSTK--SHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHNRMQTNLEPQE 1023
Query: 63 ASKTFVELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIH 122
+ F+E+PPEL + + +S S S +PSIMHR+E+LLVA+ LK H+ S + EI
Sbjct: 1024 LDEYFIEIPPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELK-HVLSASIPEIA 1082
Query: 123 AL---KVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKI 179
+ +VLEA+TT++C E E LE LGD+FLK+AV++HLF + + EG LT +R +
Sbjct: 1083 EVSGHRVLEALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNV 1142
Query: 180 ISNA 183
++N+
Sbjct: 1143 VNNS 1146
>AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60,
ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
LENGTH=1909
Length = 1909
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 99/169 (58%), Gaps = 12/169 (7%)
Query: 19 TYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKDREA----SKTF-VELPPE 73
TY +Y+K+ +G L + Q L+K + + KN P+ E+ E+ KT+ V LPPE
Sbjct: 1254 TYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLS-PRFEQSGESETVLDKTYYVFLPPE 1312
Query: 74 LCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVLEAITTK 133
LC ++ P+S I +PSIM R+ES+L+AV LK + I K+LEA+T
Sbjct: 1313 LC--VVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISY----PIPTSKILEALTAA 1366
Query: 134 RCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
C+ETF YE E LGD++LK+ V++ LF Y HEG LT R +++SN
Sbjct: 1367 SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1415
>AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
LENGTH=1910
Length = 1910
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 99/169 (58%), Gaps = 12/169 (7%)
Query: 19 TYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHGPKQEKDREA----SKTF-VELPPE 73
TY +Y+K+ +G L + Q L+K + + KN P+ E+ E+ KT+ V LPPE
Sbjct: 1255 TYADYYKQKYGVDLNCKQQPLIKGRGVSYCKNLLS-PRFEQSGESETVLDKTYYVFLPPE 1313
Query: 74 LCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGSRWLNEIHALKVLEAITTK 133
LC ++ P+S I +PSIM R+ES+L+AV LK + I K+LEA+T
Sbjct: 1314 LC--VVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISY----PIPTSKILEALTAA 1367
Query: 134 RCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
C+ETF YE E LGD++LK+ V++ LF Y HEG LT R +++SN
Sbjct: 1368 SCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1416
>AT3G43920.1 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
chr3:15753548-15760830 FORWARD LENGTH=1531
Length = 1531
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 8 SPLKLK-SGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHG----------PK 56
SP ++ S TY YF K +G L +Q L+K K+ N PK
Sbjct: 828 SPFEVDASSGYATYAEYFNKKYGIVLAHPNQPLMKLKQSHHAHNLLVDFNEEMVVKTEPK 887
Query: 57 QEKDREASKTF-VELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGS 115
R+ LPPEL I P + + S +PS+MHRLESL++A L+ +
Sbjct: 888 AGNVRKRKPNIHAHLPPELLARIDVPRA--VLKSIYLLPSVMHRLESLMLASQLREEIDC 945
Query: 116 RWLN-EIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTL 174
N I + +LEA+TT C E+F E LE LGDS LKY + HLF Y + EG L+
Sbjct: 946 SIDNFSISSTSILEAVTTLTCPESFSMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1005
Query: 175 KRVKIISNA 183
+R IISN+
Sbjct: 1006 QRQSIISNS 1014
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 128 EAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
EAIT +E++ YE LE LGDS L + +T+HLF Y+ G +T R ++N
Sbjct: 1168 EAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNN 1222
>AT3G43920.3 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
chr3:15753548-15760830 FORWARD LENGTH=1570
Length = 1570
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 8 SPLKLK-SGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHG----------PK 56
SP ++ S TY YF K +G L +Q L+K K+ N PK
Sbjct: 867 SPFEVDASSGYATYAEYFNKKYGIVLAHPNQPLMKLKQSHHAHNLLVDFNEEMVVKTEPK 926
Query: 57 QEKDREASKTF-VELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGS 115
R+ LPPEL I P + + S +PS+MHRLESL++A L+ +
Sbjct: 927 AGNVRKRKPNIHAHLPPELLARIDVPRA--VLKSIYLLPSVMHRLESLMLASQLREEIDC 984
Query: 116 RWLN-EIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTL 174
N I + +LEA+TT C E+F E LE LGDS LKY + HLF Y + EG L+
Sbjct: 985 SIDNFSISSTSILEAVTTLTCPESFSMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1044
Query: 175 KRVKIISNA 183
+R IISN+
Sbjct: 1045 QRQSIISNS 1053
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 128 EAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
EAIT +E++ YE LE LGDS L + +T+HLF Y+ G +T R ++N
Sbjct: 1207 EAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNN 1261
>AT3G43920.2 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
chr3:15753548-15760830 FORWARD LENGTH=1580
Length = 1580
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 8 SPLKLK-SGEVITYKNYFKKNHGTQLYFEHQRLLKAKRIFQVKNYCHG----------PK 56
SP ++ S TY YF K +G L +Q L+K K+ N PK
Sbjct: 877 SPFEVDASSGYATYAEYFNKKYGIVLAHPNQPLMKLKQSHHAHNLLVDFNEEMVVKTEPK 936
Query: 57 QEKDREASKTF-VELPPELCCVIMSPISDITIYSFSFIPSIMHRLESLLVAVNLKMHMGS 115
R+ LPPEL I P + + S +PS+MHRLESL++A L+ +
Sbjct: 937 AGNVRKRKPNIHAHLPPELLARIDVPRA--VLKSIYLLPSVMHRLESLMLASQLREEIDC 994
Query: 116 RWLN-EIHALKVLEAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTL 174
N I + +LEA+TT C E+F E LE LGDS LKY + HLF Y + EG L+
Sbjct: 995 SIDNFSISSTSILEAVTTLTCPESFSMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSR 1054
Query: 175 KRVKIISNA 183
+R IISN+
Sbjct: 1055 QRQSIISNS 1063
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 128 EAITTKRCKETFHYESLETLGDSFLKYAVTQHLFQAYQNHHEGLLTLKRVKIISN 182
EAIT +E++ YE LE LGDS L + +T+HLF Y+ G +T R ++N
Sbjct: 1217 EAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNN 1271