Miyakogusa Predicted Gene

Lj6g3v1370730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1370730.1 tr|C7J245|C7J245_ORYSJ Os05g0523100 protein
OS=Oryza sativa subsp. japonica GN=Os05g0523100 PE=4
SV=,29.91,5e-19,Rep_fac-A_C,Replication factor A, C-terminal;
seg,NULL; Nucleic acid-binding proteins,Nucleic acid-b,CUFF.60001.1
         (254 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    72   3e-13
AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    64   1e-10

>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 13/124 (10%)

Query: 27  ILATINDIDDTFGWSYIACHKCMKKLNK---------RGDQYMCPTCNEPAKYPTPRFKI 77
           I+A+I  ID    W YI C+ C KK++             +Y C  C+      + RF++
Sbjct: 271 IIASIFSIDTKVPWFYIGCNICFKKVSPYFNPETEEIEAGKYECEKCDTFVTTTSTRFRV 330

Query: 78  QLEVSDETAAAKLTLFDRDAQQLLHTTASELL----QHGSNKEIPPVLRNLCKQTLIFEI 133
           Q+ V D T  A   LFD+D  +L+H +A ELL    Q   + +IP  L +L  +  +F I
Sbjct: 331 QVTVLDHTGEASFLLFDQDVIKLIHKSAYELLEQQVQFNRSDKIPQELLDLEGRQFVFTI 390

Query: 134 KLSD 137
           + SD
Sbjct: 391 QGSD 394


>AT1G52950.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr1:19725483-19728007 FORWARD LENGTH=566
          Length = 566

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 51/251 (20%)

Query: 22  EKVFTILATINDIDDTFGWSYIACHKCMKKLNKRGDQ---------YMCPTCNEPAKYPT 72
           EKV  I+ +I  ID  + W Y A  KC KK+ K             Y C  C        
Sbjct: 285 EKV-KIICSILSIDLDYSWYYYAHIKCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIE 343

Query: 73  PRFKIQLEVSDETAAAKLTLFDRDAQQLLHTTASELL-----QHGSNKEIPPVLRNLCKQ 127
            R+ + L++ D T  +KL LFD   + ++   A+ELL     Q    + +P V++N+  +
Sbjct: 344 ARYWLHLDIMDNTGESKLMLFDSFVEPIIGCPATELLDVTNEQIDEPQPLPDVVKNIIGK 403

Query: 128 TLIFEIKLSDHNLKEGSQNYTVTRTFIPTSLIEEQSTHKSVQKDPISPQQISSDEEEEPL 187
           T  F + +   N+  G+  Y V       ++ +    + SV  +P+    ISS+++   L
Sbjct: 404 TYQFLVCVEQDNISRGNDEYKVAEVLTSQNINQALPINDSV--NPVDHSSISSNDQVLML 461

Query: 188 VFXXXXXQEAAKPRQSASNHQEENNGQDGITSIDEEQILIQTL-RTPTSKR---TRDGNG 243
                            +N ++E+N               QTL RTP SKR     DG+ 
Sbjct: 462 ----------------TNNSEKEDNS--------------QTLSRTPLSKRKEIVDDGSD 491

Query: 244 STTRKRKRITR 254
            ++  +K+ T+
Sbjct: 492 QSSTSKKQCTK 502