Miyakogusa Predicted Gene

Lj6g3v1105010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v1105010.1 Non Chatacterized Hit- tr|I3T952|I3T952_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.54,0,seg,NULL;
Snf7,Snf7; CHARGED MULTIVESICULAR BODY PROTEIN 2A (CHROMATIN-MODIFYING
PROTEIN 2A)(CHMP2A),NODE_33197_length_914_cov_28.466084.path2.1
         (219 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...   323   7e-89
AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associa...   289   1e-78
AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein | chr5:17946...   288   3e-78
AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:25887...   141   3e-34
AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein | chr5:7681...    70   1e-12

>AT5G44560.1 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946081-17948222 FORWARD LENGTH=222
          Length = 222

 Score =  323 bits (827), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 165/222 (74%), Positives = 190/222 (85%), Gaps = 5/222 (2%)

Query: 3   LNIFKKKTSPKEALRSSKREMAVATRGIEKEIASLQMEERKLVAEIKRTAKTGNEAATRI 62
           +NIFKKKT+PK+ALR+SKREMAVATRGIE+EI SLQ+EE++LVAEIK+TAKTGNEAAT+I
Sbjct: 1   MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60

Query: 63  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAK 122
           LARQLVRLRQQITNLQGSRAQIRGV THTQALYASTSIS+GMKGATKAMVAMNKQMAP K
Sbjct: 61  LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120

Query: 123 QAKVIQEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSS 182
           QAKVI++FQKQSAQ+DMTIEMMSE+I                 NQVLDEIGV +ASQLSS
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180

Query: 183 APKGRIGSRSAENVAP-----RPAESNDVEDLEKRLASLRRI 219
           APKGRI +++A   A      + +ES++V++LEKRLASLRRI
Sbjct: 181 APKGRIATKTAAPPASTAATNKNSESSEVDELEKRLASLRRI 222


>AT1G03950.1 | Symbols: VPS2.3 | vacuolar protein sorting-associated
           protein 2.3 | chr1:1011388-1013212 REVERSE LENGTH=210
          Length = 210

 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 145/215 (67%), Positives = 172/215 (80%), Gaps = 5/215 (2%)

Query: 3   LNIFKKKTSPKEALRSSKREMAVATRGIEKEIASLQMEERKLVAEIKRTAKTGNEAATRI 62
           +NIF KK +P+E LR SKREM  ATRGIEKEI SLQ EE+KLV EIKRTAK+GNE AT+I
Sbjct: 1   MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60

Query: 63  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAK 122
           LARQL+RLRQQI NLQGSRAQ+RG+ATHTQA++A TS++ GM+GATKAM AM+K M PAK
Sbjct: 61  LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120

Query: 123 QAKVIQEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSS 182
           QAKV++EFQKQSAQMDMT EMMS+SI                 NQVLDEIG+DIASQLSS
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180

Query: 183 APKGRIGSRSAENVAPRPAESNDVEDLEKRLASLR 217
           APKG+IG + AE+V      S+ +++LEKRLA+LR
Sbjct: 181 APKGKIGGKKAEDVG-----SSGIDELEKRLAALR 210


>AT5G44560.2 | Symbols: VPS2.2 | SNF7 family protein |
           chr5:17946516-17948222 FORWARD LENGTH=202
          Length = 202

 Score =  288 bits (736), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/202 (73%), Positives = 170/202 (84%), Gaps = 5/202 (2%)

Query: 23  MAVATRGIEKEIASLQMEERKLVAEIKRTAKTGNEAATRILARQLVRLRQQITNLQGSRA 82
           MAVATRGIE+EI SLQ+EE++LVAEIK+TAKTGNEAAT+ILARQLVRLRQQITNLQGSRA
Sbjct: 1   MAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRA 60

Query: 83  QIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAKQAKVIQEFQKQSAQMDMTIE 142
           QIRGV THTQALYASTSIS+GMKGATKAMVAMNKQMAP KQAKVI++FQKQSAQ+DMTIE
Sbjct: 61  QIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIE 120

Query: 143 MMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAPKGRIGSRSAENVAP---- 198
           MMSE+I                 NQVLDEIGV +ASQLSSAPKGRI +++A   A     
Sbjct: 121 MMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAAT 180

Query: 199 -RPAESNDVEDLEKRLASLRRI 219
            + +ES++V++LEKRLASLRRI
Sbjct: 181 NKNSESSEVDELEKRLASLRRI 202


>AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein |
           chr2:2588740-2590285 REVERSE LENGTH=225
          Length = 225

 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 8/222 (3%)

Query: 5   IFKKKTSPKEALRSSKREMAVATRGIEKEIASLQMEERKLVAEIKRTAKTGNEAATRILA 64
           IF K+ +P E LR +KR +  + R IE+E   LQ +E+KL+ EIK+TAK G   A +++A
Sbjct: 5   IFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMA 64

Query: 65  RQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAKQA 124
           + L+R R QI      ++Q++GV+   Q L ++ ++   MKG TKAM  MN+QM      
Sbjct: 65  KDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQ 124

Query: 125 KVIQEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSSAP 184
           K++QEF++Q+ +M+M  E+M ++I                 +QVLDEIG+DI  +L +AP
Sbjct: 125 KIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAP 184

Query: 185 KGRIGSRSAENVAPRPAESNDVE-------DLEKRLASLRRI 219
            G +   +A+N   + AE+   E       DL+ RL +LR++
Sbjct: 185 SGAVAVPAAKNKVVQ-AEATGAEDSGGIDSDLQARLDNLRKM 225


>AT5G22950.1 | Symbols: VPS24.1 | SNF7 family protein |
           chr5:7681380-7682720 FORWARD LENGTH=229
          Length = 229

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 9/224 (4%)

Query: 3   LNIFKKKTSPKEALRSSKREMAVATRGIEKEIASLQMEERKLVAEIKRTAKTGNEAATRI 62
           +NI K K  PK+ LR  +R++    R IE++I  +Q EER +   IK  AK  +  + + 
Sbjct: 5   MNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKA 64

Query: 63  LARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAK 122
           LA+++V  R+ +  L  ++AQ+  ++ H     A       +  + + M  +N  M   +
Sbjct: 65  LAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQ 124

Query: 123 QAKVIQEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXXXXXXXNQVLDEIGVDIASQLSS 182
            A  +QEF K+  +  +  E ++E+I                 ++VL  I  + A++L  
Sbjct: 125 MAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPV 184

Query: 183 AP-KGRI--------GSRSAENVAPRPAESNDVEDLEKRLASLR 217
           A  K RI         SR  E VA    +  ++E++  RLA +R
Sbjct: 185 AVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVR 228