Miyakogusa Predicted Gene

Lj6g3v0215830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0215830.1 Non Chatacterized Hit- tr|G3MI19|G3MI19_9ACAR
Putative uncharacterized protein (Fragment)
OS=Amblyom,37.66,2e-19,DNA_pol_E_B,DNA polymerase alpha/epsilon,
subunit B; SUBFAMILY NOT NAMED,NULL; DNA POLYMERASE 2
ALPH,CUFF.57602.1
         (157 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67630.1 | Symbols: POLA2 | DNA polymerase alpha 2 | chr1:253...   223   4e-59

>AT1G67630.1 | Symbols: POLA2 | DNA polymerase alpha 2 |
           chr1:25344573-25348287 REVERSE LENGTH=620
          Length = 620

 Score =  223 bits (568), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 106/156 (67%), Positives = 131/156 (83%), Gaps = 2/156 (1%)

Query: 1   MGSAARVLLVPSIRDANHDFVFPQPALDISLPDLKSQIVSLANPGLFEANEVKVGCCTMD 60
           MGS  RV+LVPSIRDANHDF+FPQP  DI +PDL+ Q+ SL+NPG FEAN+VKV CCT+D
Sbjct: 436 MGSEVRVVLVPSIRDANHDFIFPQPPFDIHIPDLEHQMTSLSNPGTFEANQVKVSCCTVD 495

Query: 61  ILKQLSGEEISRTAADGKPVDRLSRLANHILNQQSFYPLYPPAESVPLDSSLAPEALQLS 120
           +LKQLSGEE+S+  + G P DR+SRLA+H+L Q+SFYPLYPP ES+P DSSLAP+ALQ+S
Sbjct: 496 VLKQLSGEEMSKNPS-GVPTDRMSRLASHLLRQRSFYPLYPPPESLPYDSSLAPKALQIS 554

Query: 121 LIPDVLIIPSDIKYFVKVLSSEHEGIDHAKCVAVNP 156
            IPD+L++PSD++YFVK+LS   E  D AKCV VNP
Sbjct: 555 SIPDILLLPSDMRYFVKILSLGEEE-DAAKCVCVNP 589