Miyakogusa Predicted Gene

Lj5g3v2030810.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2030810.2 tr|B9DH81|B9DH81_ARATH AT5G51780 protein
OS=Arabidopsis thaliana GN=AT5G51780 PE=2
SV=1,37.43,3e-19,HLH,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-binding domain,Helix-loop-helix domain; no de,CUFF.56477.2
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51790.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   106   1e-23
AT4G25410.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   100   1e-21
AT5G51780.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    99   1e-21
AT4G25400.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    93   9e-20
AT1G12540.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    80   1e-15
AT1G62975.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    77   8e-15

>AT5G51790.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:21039762-21040594 FORWARD
           LENGTH=204
          Length = 204

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 107/177 (60%), Gaps = 5/177 (2%)

Query: 18  EKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINAL 77
           EKK+  R +ERQRR +M++L ASLRS LPL+ IKGKR++SD +  AV+ ++  + +I  L
Sbjct: 26  EKKLLHRNIERQRRQEMAILFASLRSQLPLKYIKGKRAMSDHVNGAVSFIKDTQTRIKDL 85

Query: 78  QIKRDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGVEVAV--YGSGFEENSTR 135
             +RDELK  + + + +     G+  S +    V +     G EV V    SG E  +  
Sbjct: 86  SARRDELKREIGDPTSLTGSGSGSGSSRSEPASVMVQPCVSGFEVVVSSLASGLE--AWP 143

Query: 136 LSVLMQILLQEGCDVVSCVSSLVNGRIFHTIKSEVKDLTCLDLARLQHRL-DQAILS 191
           LS ++++L  +G +V+S +++ VN R+ +TI+ EV    C DLA LQ +L +Q +LS
Sbjct: 144 LSRVLEVLHGQGLEVISSLTARVNERLMYTIQVEVNSFDCFDLAWLQQKLIEQLVLS 200


>AT4G25410.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:12985772-12987149 FORWARD
           LENGTH=230
          Length = 230

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 8/167 (4%)

Query: 24  REVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINALQIKRDE 83
           R++ERQRR +M+ L A+LR+ LPL+ IKGKR+VSD +  AVN ++  + +I  L  +RDE
Sbjct: 48  RDIERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELSARRDE 107

Query: 84  L-----KEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGVEVAVYGSGFEENSTRLSV 138
           L     +    N    KT   G+D   +    V +     G+EV V  +     +  LS 
Sbjct: 108 LSRETGQGYKSNPDPGKT---GSDVGKSEPATVMVQPHVSGLEVVVSSNSSGPEALPLSK 164

Query: 139 LMQILLQEGCDVVSCVSSLVNGRIFHTIKSEVKDLTCLDLARLQHRL 185
           +++ + ++G +V+S  ++ VN R+ HTI+ EV    C+DL  LQ +L
Sbjct: 165 VLETIQEKGLEVMSSFTTRVNDRLMHTIQVEVNSFGCIDLLWLQQKL 211


>AT5G51780.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:21034879-21036446 FORWARD
           LENGTH=174
          Length = 174

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 106/179 (59%), Gaps = 22/179 (12%)

Query: 19  KKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINALQ 78
           +K+  RE ERQRR +M+ L ASLRS LPL  IKGKRS SD + EAVN++++L++KI  L 
Sbjct: 2   EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61

Query: 79  IKRDELKEMMV----------NLSFVK-TETVGADHSSALGKCVSINLIPGGVEVAVYGS 127
           ++RD+L   MV          N  F +  E +   +   + +C+       GVE+ +  S
Sbjct: 62  VRRDDL---MVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLV------GVEIML-SS 111

Query: 128 GFEENSTRLSVLMQILLQEGCDVVSCVSSLVNGRIFHTIKSEVKDLTCL-DLARLQHRL 185
                  R S ++Q+L + G  +++ +SS+V+ R+ +TI++EV D+  + DLA L+ RL
Sbjct: 112 RCCGGQPRFSSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRL 170


>AT4G25400.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:12981295-12982335 FORWARD
           LENGTH=163
          Length = 163

 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 9/167 (5%)

Query: 19  KKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKINALQ 78
           +K+  +E+E++RR +M+ L ASLRS LPLE I+GKRS SD +  AVN++ +L++ I  + 
Sbjct: 2   EKLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDIN 61

Query: 79  IKRDELKEMMVNLSFVKTETVGADHSSALGKCVSINLIPGGVEVAVYGSGFEENSTRLSV 138
            KRD+L    V LS     +      + +   V I     G+E+ +  S  +   T  S 
Sbjct: 62  SKRDDL----VLLSGRSFRSSNEQEWNEISNHVVIRPCLVGIEIVL--SILQ---TPFSS 112

Query: 139 LMQILLQEGCDVVSCVSSLVNGRIFHTIKSEVKDLTCLDLARLQHRL 185
           ++Q+L + G  V+  + S VN R+ HT+++EV DL  +DLA L+  L
Sbjct: 113 VLQVLREHGLYVLGYICSSVNDRLIHTLQAEVNDLALIDLADLKDTL 159


>AT1G12540.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:4272960-4273980 FORWARD
           LENGTH=257
          Length = 257

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 106/192 (55%), Gaps = 5/192 (2%)

Query: 6   IQRIISSTSDNDEKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVN 65
           +  I+    +   K+   +E+ERQRR + + L   LR  LP + IKGKRS +D + EAVN
Sbjct: 62  LSEIMKGDDEPKNKRAKHKELERQRRQENTSLFKILRYLLPSQYIKGKRSSADHVLEAVN 121

Query: 66  HVQFLKQKINALQIKRDELKEMMVNLSF---VKTETVGADHSSALGKC-VSINLIPGGVE 121
           +++ L++KI  +  KRD +K  + + S        ++ +   S +G   +++ + P  + 
Sbjct: 122 YIKDLQKKIKEVSEKRDRIKRSITHPSSRGEFSIRSLASSTCSCVGDTNIAVVVRPCLIG 181

Query: 122 VAVYGSGFEENSTRLSVLMQILLQEGC-DVVSCVSSLVNGRIFHTIKSEVKDLTCLDLAR 180
           + +  S    + + LS ++Q+L QE C ++VSC+S+ ++    HTI SEV++   +  + 
Sbjct: 182 LEIVVSCCNRHESCLSSVLQLLAQEQCFNIVSCISTRLHQGFIHTIASEVEEGIEVYFSE 241

Query: 181 LQHRLDQAILSR 192
           LQ ++ +   SR
Sbjct: 242 LQEKIIKIGTSR 253


>AT1G62975.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:23328901-23330522 FORWARD
           LENGTH=259
          Length = 259

 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 32/195 (16%)

Query: 15  DNDEKKINRREVERQRRTQMSVLCASLRSSLPLELIKGKRSVSDLIGEAVNHVQFLKQKI 74
           D + KK+  R++ERQRR ++S L   LR+ LP + I+GKRS SD I +AVN+++ L+ KI
Sbjct: 70  DRESKKMKHRDIERQRRQEVSSLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQIKI 129

Query: 75  NALQIKRDELKEMMVNLSFVKT---------------------ETVGADHSSALGKCVSI 113
             L  KR+ +K+++   +   +                       VG  H       +++
Sbjct: 130 KELNEKRNRVKKVISATTTTHSAIEECTSSLSSSAASTLSSSCSCVGDKH-------ITV 182

Query: 114 NLIPG--GVEVAVYGSGFEENSTRLSVLMQILLQEG-CDVVSCVSSLVNGRIFHTIKSEV 170
            + P   GVE+ +       N + LS ++Q+L QE    VVSC+S+    R  HTI S+V
Sbjct: 183 VVTPCLVGVEIII-SCCLGRNKSCLSSVLQMLAQEQRFSVVSCLSARRQQRFMHTIVSQV 241

Query: 171 KDLTCLDLARLQHRL 185
           +D   +++  L+ ++
Sbjct: 242 EDGKQINILELKDKI 256