Miyakogusa Predicted Gene

Lj5g3v1888370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1888370.1 Non Chatacterized Hit- tr|A3IZC0|A3IZC0_9CHRO
Putative uncharacterized protein OS=Cyanothece sp.
CCY,54.88,4e-19,YGGT,Uncharacterised protein family Ycf19,CUFF.56099.1
         (214 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G36120.1 | Symbols: CCB3, YLMG3, atylmg3 | cofactor assembly,...   184   5e-47

>AT5G36120.1 | Symbols: CCB3, YLMG3, atylmg3 | cofactor assembly,
           complex C (B6F) | chr5:14198679-14199203 REVERSE
           LENGTH=174
          Length = 174

 Score =  184 bits (466), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 118/167 (70%), Gaps = 18/167 (10%)

Query: 46  HRSSPVMHCCSCYTQVGASADITTFSILDAVATQNSLYSDVDLNTLKLSVPETLHAASTD 105
            RSSP     S    + ++    T S ++  AT  +L    +      S+ E+L   S  
Sbjct: 23  RRSSPNFRNRSTSLPIVSA----TLSHIEEAATTTNLIRQTN------SISESLRNIS-- 70

Query: 106 FMSGLVLADIDPATAKLAIGFLGPFLSVFGFLFIIRIVMSWYPKLPVGKFPYVIAYAPTE 165
                 LAD+DP TAKLAIG LGP LS FGFLFI+RIVMSWYPKLPV KFPYV+AYAPTE
Sbjct: 71  ------LADLDPGTAKLAIGILGPALSAFGFLFILRIVMSWYPKLPVDKFPYVLAYAPTE 124

Query: 166 PLLIPTRKVIPPLAGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQK 212
           P+L+ TRKVIPPLAGVDVTPVVWFGL+SFL+EILVGPQGLLVL+SQ+
Sbjct: 125 PILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLLVLVSQQ 171