Miyakogusa Predicted Gene

Lj5g3v1696670.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1696670.1 Non Chatacterized Hit- tr|C5YXQ2|C5YXQ2_SORBI
Putative uncharacterized protein Sb09g019910
OS=Sorghu,46,3e-19,seg,NULL; zf-CW,Zinc finger, CW-type; FAMILY NOT
NAMED,NULL; ZF_CW,Zinc finger, CW-type,CUFF.55710.1
         (101 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63030.1 | Symbols: MBD4 | methyl-CPG-binding domain 4 | chr3...   119   4e-28
AT4G22745.1 | Symbols: MBD1 | methyl-CPG-binding domain 1 | chr4...   114   1e-26
AT5G35330.3 | Symbols: MBD02 | methyl-CPG-binding domain protein...    79   5e-16
AT5G35330.2 | Symbols: MBD02, MBD2 | methyl-CPG-binding domain p...    79   5e-16
AT5G35330.1 | Symbols: MBD02, MBD2, ATMBD2 | methyl-CPG-binding ...    79   5e-16
AT4G00416.1 | Symbols: MBD3 | methyl-CPG-binding domain 3 | chr4...    70   3e-13

>AT3G63030.1 | Symbols: MBD4 | methyl-CPG-binding domain 4 |
           chr3:23295394-23296425 FORWARD LENGTH=186
          Length = 186

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 65/76 (85%)

Query: 26  IDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIEYDSSRTWV 85
           ID YAAQC  C KWRVID+Q+E+E+IR K+ ++PF+C +K   SC++PADI+YDSSRTWV
Sbjct: 25  IDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCEEPADIDYDSSRTWV 84

Query: 86  IDKPNLPKTPEGFKRS 101
           IDKP LPKTP+GFKRS
Sbjct: 85  IDKPGLPKTPKGFKRS 100


>AT4G22745.1 | Symbols: MBD1 | methyl-CPG-binding domain 1 |
           chr4:11947421-11948514 REVERSE LENGTH=204
          Length = 204

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 25  SIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIEYDSSRTW 84
           SIDV+A QC KC+KWR IDTQ E+E+IR +V ++PF C  K   SC+D  D+ YDSSRTW
Sbjct: 51  SIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSSRTW 110

Query: 85  VIDKPNLPKTPEGFKRS 101
           VIDKP LP+TP GFKRS
Sbjct: 111 VIDKPGLPRTPRGFKRS 127


>AT5G35330.3 | Symbols: MBD02 | methyl-CPG-binding domain protein 02
           | chr5:13523725-13525270 REVERSE LENGTH=272
          Length = 272

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 4/80 (5%)

Query: 25  SIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSR----KANCSCDDPADIEYDS 80
           SI  +  QC  C KWR++ + Q++EEIR ++ + PF C      K + SCD PADI  D 
Sbjct: 55  SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDG 114

Query: 81  SRTWVIDKPNLPKTPEGFKR 100
           +R W IDKPN+ + P G++R
Sbjct: 115 TRLWAIDKPNISRPPAGWQR 134


>AT5G35330.2 | Symbols: MBD02, MBD2 | methyl-CPG-binding domain
           protein 02 | chr5:13523725-13525270 REVERSE LENGTH=272
          Length = 272

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 4/80 (5%)

Query: 25  SIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSR----KANCSCDDPADIEYDS 80
           SI  +  QC  C KWR++ + Q++EEIR ++ + PF C      K + SCD PADI  D 
Sbjct: 55  SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDG 114

Query: 81  SRTWVIDKPNLPKTPEGFKR 100
           +R W IDKPN+ + P G++R
Sbjct: 115 TRLWAIDKPNISRPPAGWQR 134


>AT5G35330.1 | Symbols: MBD02, MBD2, ATMBD2 | methyl-CPG-binding
           domain protein 02 | chr5:13523725-13525270 REVERSE
           LENGTH=272
          Length = 272

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 4/80 (5%)

Query: 25  SIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSR----KANCSCDDPADIEYDS 80
           SI  +  QC  C KWR++ + Q++EEIR ++ + PF C      K + SCD PADI  D 
Sbjct: 55  SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDG 114

Query: 81  SRTWVIDKPNLPKTPEGFKR 100
           +R W IDKPN+ + P G++R
Sbjct: 115 TRLWAIDKPNISRPPAGWQR 134


>AT4G00416.1 | Symbols: MBD3 | methyl-CPG-binding domain 3 |
           chr4:179022-179513 FORWARD LENGTH=163
          Length = 163

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 8/84 (9%)

Query: 20  VLSQGSIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPAD--IE 77
           V+    ID YAAQC KCLK R I++Q+++EEIR K  ++ F+C R     C++P D  + 
Sbjct: 3   VVKTTLIDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMN 57

Query: 78  YDS-SRTWVIDKPNLPKTPEGFKR 100
           +DS +  W  D+ ++PKTP+G KR
Sbjct: 58  FDSLTMRWFQDEHSIPKTPQGLKR 81