Miyakogusa Predicted Gene
- Lj5g3v1262950.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1262950.1 tr|B2CP01|B2CP01_LOTJA Granule bound starch
synthase Ia OS=Lotus japonicus PE=2
SV=1,98.81,0,Glycos_transf_1,Glycosyl transferase, family 1;
UDP-Glycosyltransferase/glycogen phosphorylase,NULL;,CUFF.55103.1
(168 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32900.1 | Symbols: | UDP-Glycosyltransferase superfamily pr... 268 1e-72
AT3G01180.1 | Symbols: AtSS2, SS2 | starch synthase 2 | chr3:624... 105 1e-23
AT5G24300.2 | Symbols: SSI1 | Glycogen/starch synthases, ADP-glu... 105 2e-23
AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch syntha... 105 2e-23
AT1G11720.1 | Symbols: ATSS3, SS3 | starch synthase 3 | chr1:395... 95 3e-20
AT1G11720.2 | Symbols: SS3 | starch synthase 3 | chr1:3951597-39... 95 3e-20
AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | ch... 80 5e-16
>AT1G32900.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:11920582-11923506 REVERSE LENGTH=610
Length = 610
Score = 268 bits (685), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 124/168 (73%), Positives = 140/168 (83%)
Query: 1 MEKQIEQLEETYPDKAIGVAKFNAPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVP 60
ME QI +LEE +P KA+GVAKFN PLAH I AGADFI++PSRFEPCGL+QLHAM YGTVP
Sbjct: 443 MEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRFEPCGLIQLHAMRYGTVP 502
Query: 61 IVSSTGGLVDTVKEGYTGFHTGAFNVECETVDPADVDKLATTVKRALQTYGTPVLKEMIQ 120
IV+STGGLVDTVK+GYTGFH G FNV+CE VDP DV A V RA+ YGT ++EM++
Sbjct: 503 IVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMQEMVK 562
Query: 121 NCMAQDFSWKGPAKQWEKALLSLEVAGSEAGIDGEEIAPLAKENVPTP 168
NCM QDFSWKGPA+ WEK LLSL VAGSEAG +GEEIAPLAKENV TP
Sbjct: 563 NCMDQDFSWKGPARLWEKVLLSLNVAGSEAGTEGEEIAPLAKENVATP 610
>AT3G01180.1 | Symbols: AtSS2, SS2 | starch synthase 2 |
chr3:62456-65678 REVERSE LENGTH=792
Length = 792
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 84/144 (58%), Gaps = 6/144 (4%)
Query: 1 MEKQIEQLEETYPDKAIGVAKFNAPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVP 60
+E+ + Q+E Y DKA G F+ AH+I AGAD +++PSRFEPCGL QL+AM YGT+P
Sbjct: 648 LEEVLRQMEHQYRDKARGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIP 707
Query: 61 IVSSTGGLVDTVKEGYTGFHTGAFNVECETVDPADVDKLATTVKRALQTYG--TPVLKEM 118
+V + GGL DTV++ TG T D A+ KL + L TY + +
Sbjct: 708 VVHAVGGLRDTVQQFDPYSETGL----GWTFDSAEAGKLIHALGNCLLTYREYKESWEGL 763
Query: 119 IQNCMAQDFSWKGPAKQWEKALLS 142
+ M QD SW A+++E+ L++
Sbjct: 764 QRRGMTQDLSWDNAAEKYEEVLVA 787
>AT5G24300.2 | Symbols: SSI1 | Glycogen/starch synthases,
ADP-glucose type | chr5:8266934-8270860 FORWARD
LENGTH=652
Length = 652
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 2/141 (1%)
Query: 2 EKQIEQLEETYPDKAIGVAKFNAPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVPI 61
E + +EETY DK G FN P++H+I AG D +++PSRFEPCGL QL+AM YGT+P+
Sbjct: 501 ESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPV 560
Query: 62 VSSTGGLVDTVKEGYTGFHTGAFNVECETVDPADVDKLATTVKRALQTYG--TPVLKEMI 119
V TGGL DTV+ GA P D + + ++ A TY + ++
Sbjct: 561 VHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALRLAAATYREYKQSWEGLM 620
Query: 120 QNCMAQDFSWKGPAKQWEKAL 140
+ M +++SW+ A Q+E+
Sbjct: 621 RRGMTRNYSWENAAVQYEQVF 641
>AT5G24300.1 | Symbols: SSI1, SSI, ATSS1 | Glycogen/starch
synthases, ADP-glucose type | chr5:8266934-8270860
FORWARD LENGTH=652
Length = 652
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 2/141 (1%)
Query: 2 EKQIEQLEETYPDKAIGVAKFNAPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVPI 61
E + +EETY DK G FN P++H+I AG D +++PSRFEPCGL QL+AM YGT+P+
Sbjct: 501 ESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLYAMRYGTIPV 560
Query: 62 VSSTGGLVDTVKEGYTGFHTGAFNVECETVDPADVDKLATTVKRALQTYG--TPVLKEMI 119
V TGGL DTV+ GA P D + + ++ A TY + ++
Sbjct: 561 VHGTGGLRDTVENFNPYAEGGAGTGTGWVFTPLSKDSMVSALRLAAATYREYKQSWEGLM 620
Query: 120 QNCMAQDFSWKGPAKQWEKAL 140
+ M +++SW+ A Q+E+
Sbjct: 621 RRGMTRNYSWENAAVQYEQVF 641
>AT1G11720.1 | Symbols: ATSS3, SS3 | starch synthase 3 |
chr1:3952460-3956840 FORWARD LENGTH=1042
Length = 1042
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 27/146 (18%)
Query: 7 QLEETYPDKAIGVAKFNAPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVPIVSSTG 66
QL ++ D+A V ++ PL+H I AGADFI++PS FEPCGL QL AM YG VP+V TG
Sbjct: 899 QLHSSHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTG 958
Query: 67 GLVDTVKEGYTGFHTGAFNVECE--------------TVDPADVDKLATTVKRALQTY-- 110
GL DTV F+V+ + + D AD + + RA+ +
Sbjct: 959 GLFDTV-----------FDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYD 1007
Query: 111 GTPVLKEMIQNCMAQDFSWKGPAKQW 136
G + + M QD+SW PA ++
Sbjct: 1008 GREWFNSLCKTVMEQDWSWNRPALEY 1033
>AT1G11720.2 | Symbols: SS3 | starch synthase 3 | chr1:3951597-3956840
FORWARD LENGTH=1094
Length = 1094
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 27/146 (18%)
Query: 7 QLEETYPDKAIGVAKFNAPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGTVPIVSSTG 66
QL ++ D+A V ++ PL+H I AGADFI++PS FEPCGL QL AM YG VP+V TG
Sbjct: 951 QLHSSHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTG 1010
Query: 67 GLVDTVKEGYTGFHTGAFNVECE--------------TVDPADVDKLATTVKRALQTY-- 110
GL DTV F+V+ + + D AD + + RA+ +
Sbjct: 1011 GLFDTV-----------FDVDHDKERAQAQVLEPNGFSFDGADAPGVDYALNRAISAWYD 1059
Query: 111 GTPVLKEMIQNCMAQDFSWKGPAKQW 136
G + + M QD+SW PA ++
Sbjct: 1060 GREWFNSLCKTVMEQDWSWNRPALEY 1085
>AT4G18240.1 | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 |
chr4:10082221-10087044 FORWARD LENGTH=1040
Length = 1040
Score = 80.5 bits (197), Expect = 5e-16, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 15/147 (10%)
Query: 1 MEKQIEQLEETYP--DKAIGVAKFNAPLAHKIIAGADFIVIPSRFEPCGLVQLHAMPYGT 58
++++ E +E+ + D + K++ L+H I A +D +IPS FEPCGL Q+ AM YG+
Sbjct: 884 IQREFEGIEQQFKSHDHVRLLLKYDEALSHTIYAASDLFIIPSIFEPCGLTQMIAMRYGS 943
Query: 59 VPIVSSTGGLVDTV-----KEGYTGFHTGAFNVECETVDPADVDKLATTVKRALQTYGTP 113
+PI TGGL D+V T F G T AD ++RA Y
Sbjct: 944 IPIARKTGGLNDSVFDIDDDTIPTQFQNGF------TFQTADEQGFNYALERAFNHYKKD 997
Query: 114 VLKEM--IQNCMAQDFSWKGPAKQWEK 138
K M ++ M+ DFSW A Q+E+
Sbjct: 998 EEKWMRLVEKVMSIDFSWGSSATQYEE 1024