Miyakogusa Predicted Gene
- Lj5g3v0586520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0586520.1 tr|D5G958|D5G958_TUBMM Whole genome shotgun
sequence assembly, scaffold_161, strain Mel28 OS=Tuber
m,27.64,7e-19,RPA_C,Replication protein A, C-terminal;
tRNA_anti,Nucleic acid binding, OB-fold,
tRNA/helicase-type,CUFF.53304.1
(270 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24490.2 | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | re... 227 5e-60
AT2G24490.1 | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | re... 227 5e-60
AT3G02920.1 | Symbols: RPA32B, ATRPA32B | Replication protein A,... 172 2e-43
AT3G02920.2 | Symbols: RPA32B | Replication protein A, subunit R... 171 4e-43
>AT2G24490.2 | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A |
replicon protein A2 | chr2:10398651-10400416 REVERSE
LENGTH=279
Length = 279
Score = 227 bits (579), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 119/281 (42%), Positives = 182/281 (64%), Gaps = 18/281 (6%)
Query: 1 MFSVTQFD-----XXXXXXXXXXXQLNDSSPAPQKGRESQGLVPVTVKQINEASQSGDEK 55
MFS +QF+ Q +SS + K R+ QGLVPVTVKQI E QS EK
Sbjct: 1 MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60
Query: 56 SSFVINGVELTNVTLVGMVFEKAE-RNTDVNFVLDDGTGRIKCRRWINDAFDTQEVEEIM 114
S VING+ LTNV+LVG+V +K E + T+V F LDDGTGRI C+RW+++ FD +E+E +
Sbjct: 61 SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120
Query: 115 NGMYVRVNGHLKSFQGVRQVAAFSVRPVVNFDEIPFHFIDCIHHHLR---SKLKMEGTIS 171
+G YVR++GHLK+FQG Q+ FSVRP+++F+E+ FH+I+CIH + + S+ + G ++
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVT 180
Query: 172 TDPPASDSSLKTPVRNTSNGSQAPSSTPAYAQYGVD--GLKDCDKLVIDYLQQHSDMSDD 229
S+ T + SN +QA P + D G K+ D +++DYL+Q + +
Sbjct: 181 -------QSVNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQ 233
Query: 230 RGIHANELSRELKLPLDKIMLSLRTLGDDGLVYSTIDDFHY 270
+GIH +E++++LK+P +K+ +++L DGL+YSTID++H+
Sbjct: 234 QGIHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHF 274
>AT2G24490.1 | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A |
replicon protein A2 | chr2:10398651-10400416 REVERSE
LENGTH=279
Length = 279
Score = 227 bits (579), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 119/281 (42%), Positives = 182/281 (64%), Gaps = 18/281 (6%)
Query: 1 MFSVTQFD-----XXXXXXXXXXXQLNDSSPAPQKGRESQGLVPVTVKQINEASQSGDEK 55
MFS +QF+ Q +SS + K R+ QGLVPVTVKQI E QS EK
Sbjct: 1 MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60
Query: 56 SSFVINGVELTNVTLVGMVFEKAE-RNTDVNFVLDDGTGRIKCRRWINDAFDTQEVEEIM 114
S VING+ LTNV+LVG+V +K E + T+V F LDDGTGRI C+RW+++ FD +E+E +
Sbjct: 61 SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120
Query: 115 NGMYVRVNGHLKSFQGVRQVAAFSVRPVVNFDEIPFHFIDCIHHHLR---SKLKMEGTIS 171
+G YVR++GHLK+FQG Q+ FSVRP+++F+E+ FH+I+CIH + + S+ + G ++
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVT 180
Query: 172 TDPPASDSSLKTPVRNTSNGSQAPSSTPAYAQYGVD--GLKDCDKLVIDYLQQHSDMSDD 229
S+ T + SN +QA P + D G K+ D +++DYL+Q + +
Sbjct: 181 -------QSVNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQ 233
Query: 230 RGIHANELSRELKLPLDKIMLSLRTLGDDGLVYSTIDDFHY 270
+GIH +E++++LK+P +K+ +++L DGL+YSTID++H+
Sbjct: 234 QGIHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHF 274
>AT3G02920.1 | Symbols: RPA32B, ATRPA32B | Replication protein A,
subunit RPA32 | chr3:651844-654189 REVERSE LENGTH=278
Length = 278
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 149/243 (61%), Gaps = 12/243 (4%)
Query: 30 KGRESQGLVPVTVKQINEASQSGDEKSSFVINGVELTNVTLVGMVFEKAERNTDVNFVLD 89
K R+ + L+P+T+KQ++ AS +G+ S+F I+GV++ V +VG + R T V+FV+D
Sbjct: 34 KNRDVRTLLPLTLKQLSSASTTGE--SNFSIDGVDIKTVVIVGRISRMENRITQVDFVVD 91
Query: 90 DGTGRIKCRRWINDAFDTQEVEEIMNGMYVRVNGHLKSFQGVRQVAAFSVRPVVNFDEIP 149
DGTG + C RW + +T+E+E + GMYVR++GHLK FQG R V FSVRPV +F+EI
Sbjct: 92 DGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIV 151
Query: 150 FHFIDCIHHHLRSKLKMEGTISTD-----PPASDSSLKTPVRNTSNGSQAPSSTPAYAQY 204
HF +C++ H+ + G+I+ D P S++ TP + G PS+ +
Sbjct: 152 HHFTECMYVHMYNTKLRGGSITQDTATPRPQMPYSTMPTPAKPYQTG---PSN--QFPNQ 206
Query: 205 GVDGLKDCDKLVIDYLQQHSDMSDDRGIHANELSRELKLPLDKIMLSLRTLGDDGLVYST 264
D + + V++YL Q + + G+H + ++REL++PL ++ +L L +DG +YST
Sbjct: 207 FNDSMHGVKQTVLNYLNQPMHIVSEAGVHCDIIARELRIPLLQVKEALEQLSNDGCIYST 266
Query: 265 IDD 267
+D+
Sbjct: 267 LDE 269
>AT3G02920.2 | Symbols: RPA32B | Replication protein A, subunit
RPA32 | chr3:651844-654189 REVERSE LENGTH=298
Length = 298
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 149/243 (61%), Gaps = 12/243 (4%)
Query: 30 KGRESQGLVPVTVKQINEASQSGDEKSSFVINGVELTNVTLVGMVFEKAERNTDVNFVLD 89
+ R+ + L+P+T+KQ++ AS +G+ S+F I+GV++ V +VG + R T V+FV+D
Sbjct: 54 RNRDVRTLLPLTLKQLSSASTTGE--SNFSIDGVDIKTVVIVGRISRMENRITQVDFVVD 111
Query: 90 DGTGRIKCRRWINDAFDTQEVEEIMNGMYVRVNGHLKSFQGVRQVAAFSVRPVVNFDEIP 149
DGTG + C RW + +T+E+E + GMYVR++GHLK FQG R V FSVRPV +F+EI
Sbjct: 112 DGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKIFQGKRSVNVFSVRPVTDFNEIV 171
Query: 150 FHFIDCIHHHLRSKLKMEGTISTD-----PPASDSSLKTPVRNTSNGSQAPSSTPAYAQY 204
HF +C++ H+ + G+I+ D P S++ TP + G PS+ +
Sbjct: 172 HHFTECMYVHMYNTKLRGGSITQDTATPRPQMPYSTMPTPAKPYQTG---PSN--QFPNQ 226
Query: 205 GVDGLKDCDKLVIDYLQQHSDMSDDRGIHANELSRELKLPLDKIMLSLRTLGDDGLVYST 264
D + + V++YL Q + + G+H + ++REL++PL ++ +L L +DG +YST
Sbjct: 227 FNDSMHGVKQTVLNYLNQPMHIVSEAGVHCDIIARELRIPLLQVKEALEQLSNDGCIYST 286
Query: 265 IDD 267
+D+
Sbjct: 287 LDE 289