Miyakogusa Predicted Gene

Lj5g3v0279360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0279360.1 Non Chatacterized Hit- tr|K0RBM4|K0RBM4_THAOC
Uncharacterized protein OS=Thalassiosira oceanica
PE=4,23.56,0.00000000003,DUF3754,Protein of unknown function
DUF3754,CUFF.52870.1
         (467 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46915.1 | Symbols:  | Protein of unknown function (DUF3754) ...   509   e-144

>AT2G46915.1 | Symbols:  | Protein of unknown function (DUF3754) |
           chr2:19274018-19277707 REVERSE LENGTH=708
          Length = 708

 Score =  509 bits (1311), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/404 (63%), Positives = 321/404 (79%), Gaps = 6/404 (1%)

Query: 64  GFDLRSLLRSLEGITSKKDYEGGSRVAVATRFQRAFMQLLSNAQFEELSARDLMLTSALN 123
           GFD+ + L S  G  +KK       V  ATRFQR+F+QLL NA FEELSARDL LTSALN
Sbjct: 191 GFDIWNFLIS-SGKHAKK--RSAESVMAATRFQRSFIQLLDNAGFEELSARDLALTSALN 247

Query: 124 TDYLLTLPIYVDWKRAYESNAIIFRRGYATEKQSGLLIVEKLDYLQSKLLQAIFSVISKP 183
           TDYLLTLP+YVDWK+A ESNAI+FRRG+ATEK+ GLL+VEKLDY+QSK+LQ IFS I+KP
Sbjct: 248 TDYLLTLPVYVDWKKASESNAIVFRRGFATEKEKGLLLVEKLDYIQSKVLQVIFSTIAKP 307

Query: 184 LARLGTSISELYENASQKREVQNWTERLRLWLKELSVFQKSLLYGDHASDEQIGVSQVLN 243
           L ++G  I++    ASQ +E+Q+ +E +++WLK+LS+F++S  Y D  SD  +    + +
Sbjct: 308 LRKVGKLINKALSEASQTQEIQDLSEGMKVWLKDLSLFKES--YLDQTSDNFLKDGFLPD 365

Query: 244 AELPIWLAAQKAVALYEGILSSVGPRERLLRRLLSWIGLIPPTPETPFEVNSDSNSPEPY 303
           + LP+ LAAQ+AV+ YEG+L+ VGPR +L R+LL WIG I    ETP ++ +DS+S EPY
Sbjct: 366 SVLPMQLAAQRAVSRYEGLLTPVGPRAKLFRKLLGWIGFISRDYETPSQLANDSSSSEPY 425

Query: 304 LRPTFLSRISLSDIWRPATRKACRSDPWKILRTSISILFSQSVLQEPAFEELILLYTKEA 363
           LRP FLSR++L+DIW+PA++KAC +D WK ++TSISIL S S LQEPAFEELILLYTK+A
Sbjct: 426 LRPIFLSRMTLADIWKPASKKACGNDIWKRIKTSISILLSPSTLQEPAFEELILLYTKDA 485

Query: 364 GEINAKDKAEV-PSLQLKIYERIPIPDLAVIFPHKKLSFRIIDTVRLDAATILGLLAYFI 422
            E + K+K E   SLQL+I+ERIPIPDL VIFPHKKL FRIIDTVRLD A+ILGL AYF+
Sbjct: 486 SEKDDKNKDETRSSLQLEIFERIPIPDLPVIFPHKKLYFRIIDTVRLDIASILGLTAYFV 545

Query: 423 NYKFENVLDSPSAILLDVLAISALIIYGTRVVLGYKQTWDRYQV 466
           NYKFEN+  SPSA  LDV+A++AL+IY TRVVLGYKQTWDRYQ+
Sbjct: 546 NYKFENISSSPSAFFLDVIAVTALVIYATRVVLGYKQTWDRYQL 589