Miyakogusa Predicted Gene
- Lj5g3v0279130.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0279130.2 Non Chatacterized Hit- tr|B9R8Q0|B9R8Q0_RICCO
Brca1 interacting protein helicase 1 brip1, putative
O,57.27,0,seg,NULL; Helicase_C_2,ATP-dependent helicase, C-terminal;
DEAD_2,DEAD2; P-loop containing nucleosid,CUFF.52700.2
(1083 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20720.1 | Symbols: | RAD3-like DNA-binding helicase protein... 915 0.0
AT1G20750.1 | Symbols: | RAD3-like DNA-binding helicase protein... 824 0.0
AT1G79950.1 | Symbols: | RAD3-like DNA-binding helicase protein... 305 1e-82
AT1G03190.2 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helic... 145 1e-34
AT1G03190.1 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helic... 145 1e-34
AT1G79890.1 | Symbols: | RAD3-like DNA-binding helicase protein... 123 7e-28
>AT1G20720.1 | Symbols: | RAD3-like DNA-binding helicase protein |
chr1:7185658-7192794 REVERSE LENGTH=1175
Length = 1175
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/871 (55%), Positives = 601/871 (69%), Gaps = 56/871 (6%)
Query: 1 MAVLAARKHYCTNKNILGKENLDEECKLLLKDQA-MGCPEFKNAHKVKGHPSLQKGGSNE 59
MAVLA+RKHYCTN+++LGK+N+D+EC+LLLKD+A + C EFKN +K+ HPSLQ G NE
Sbjct: 177 MAVLASRKHYCTNRHVLGKDNVDDECRLLLKDKANIQCSEFKNVNKITSHPSLQPRGHNE 236
Query: 60 VHDIEDLVKVGQVVKGCSYYAARSMSDDAQLVFCPYSYIINPIIRGAMDVDIRGAIVILD 119
VHDIEDLVKVG+ V+GC Y+A+ SM+++AQLVFCPYSYI+NP+IR ++VD++GAI+I D
Sbjct: 237 VHDIEDLVKVGKNVRGCPYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDLKGAIIIFD 296
Query: 120 EAHNIEDITRDAGSVDIEEDVLDKLQVELQQLCSSNTAIYQPLYEMTQGLTSWIEQKKNK 179
EAHN+EDI R+AGS+++EED L KLQ EL+Q+ + IYQPL E+ +GL SWI +KK+
Sbjct: 297 EAHNMEDIAREAGSINLEEDTLFKLQNELEQMSVAQPMIYQPLCEVVEGLISWIGRKKDS 356
Query: 180 LEKRDFQHYVSCWTGDKALRELEEANISKQCFPILLECATKAIKVA--TDLETDQPRLSG 237
L KRDFQHY S WTGDKALRELEE+NI+++CFPILLEC TKAI+ + ++E+D LSG
Sbjct: 357 LAKRDFQHYFSSWTGDKALRELEESNITRECFPILLECFTKAIRTSKEAEMESDMLYLSG 416
Query: 238 MSVITLEGLFSSLTYFFSRNGSHMLDYQLSLQRCVRKDDRRGFGNWMHTFSLWCLNPAVV 297
+SV+TLE LFSSLTYFFSRNGSH+LDYQL LQR ++ D G W HTFSLWC+NPAVV
Sbjct: 417 ISVLTLEELFSSLTYFFSRNGSHILDYQLGLQRSTKRGDPSG--TWTHTFSLWCMNPAVV 474
Query: 298 FRDVADLSLSVILTSGTLSPMPSFSSELGVQFETSLEAPHVIDVDSQVWPAIISTGPGNY 357
F+D+AD+SLSVILTSGTLSPM SFSSELG+QF TSLEAPHVID + QVW IS GP NY
Sbjct: 475 FKDLADISLSVILTSGTLSPMNSFSSELGMQFGTSLEAPHVIDPNMQVWAGAISNGPSNY 534
Query: 358 PLNASYKTADAYEFQDAVGRSLEEIFKIVPGGCLVFFPSYKLMEKLCNRWSETGQWSRLH 417
PLNASYKTADAY FQDA+G+SLEEI IVPGG LVFFPSYKLMEKLC RW ET QWSRL
Sbjct: 535 PLNASYKTADAYSFQDALGKSLEEICTIVPGGSLVFFPSYKLMEKLCMRWRETEQWSRLC 594
Query: 418 TEKSLFVEPRGGSQDDFELVLKGYYDSIHHGKRPALGRKRRIKKIDLNHFYTVDSPQDSK 477
+K LFVEPRGG+QD+F+ VLKGYYDSI GK +GR RR KK T QD
Sbjct: 595 LKKDLFVEPRGGAQDEFDSVLKGYYDSIR-GKNKIIGRNRRAKKAGPIKTET----QDDS 649
Query: 478 KGGAALLGVCRGKVSEGIDFSDENARVVIIVGIPFPNINDVQVALKKKYNDTFKSSKNLL 537
K GAA L VCRGKVSEGIDF+D+NAR VIIVGIPFPN++D+QV LKKKYNDT+KSSK+LL
Sbjct: 650 KKGAAFLAVCRGKVSEGIDFADDNARAVIIVGIPFPNLHDIQVGLKKKYNDTYKSSKSLL 709
Query: 538 SGSQWYCHQAFRALNQAAGRCIRHSLDYGAIILLDERFREERNRALISKWLRRPLRVYDS 597
GS+WYC QA+RALNQAAGRCIRH DYGAII LDER++E+RNRA ISKWLR+ ++VYD+
Sbjct: 710 GGSEWYCQQAYRALNQAAGRCIRHRFDYGAIIFLDERYKEQRNRASISKWLRQSIKVYDN 769
Query: 598 FNLSLEGLKSFFEDAKERFSMNTVHISQNLVFDSDGVQNKEQNTRLKKNQKLNKS----- 652
F S+EGL+SFF KE+ + ++ V + + + + R K+NQ NKS
Sbjct: 770 FEASMEGLRSFFNSVKEQVDSKMLGSQEDSVEKNFSSEKQSKEFRRKENQIQNKSSQVEP 829
Query: 653 -----VNGREKDTSMIEDNI-----SIPTLSSHDLAE----SQLFAQRTSNTYNFEDHIN 698
N K M E + + DL +Q F Q + I+
Sbjct: 830 KVEDYTNSNPKYHFMYESKAFGYHRDVKPKIAEDLRSMGHSAQTFVQVKEEAECCREVID 889
Query: 699 PQCCNLTERLTEKLPVSITH----EETSVVKETPCIDVGHDAGSPDYSDAYSNCTIIETS 754
+C + L S+T+ ETS V+ET + G SP +C++ E+S
Sbjct: 890 LEC-GVQPDLGYCEVSSVTNCDEAPETSFVQETSGMINGISVASP------CSCSMNESS 942
Query: 755 AQF--------PPDHLSSHQMXXXXXXXXXXXXXXXITVTPEK-NIATTN--IPEMDSSL 803
+ PD L + + T E+ + T E +SS
Sbjct: 943 SPATVGLRSPGSPDQLLKQHISTPNFRKSPLGTESSVVATSERYSFGGTRSLTLEAESSF 1002
Query: 804 NLSVNSHNQKRRK----PFINLIEEENYGAP 830
N+SVNS KRRK P I+L E EN AP
Sbjct: 1003 NMSVNSQALKRRKFTSSPVIDL-EVENSDAP 1032
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 946 SCVDQRILNRIPKSAPEQGIWCLEDGCVFSTVFCPFCSNRNNLLGVQVMATNSSNVQLLE 1005
S V+QR+ + + QGIWC +DGCVF+T++CPFCS N LGVQVMAT+SSNVQ L
Sbjct: 1037 SMVNQRLCRKF-EGLKGQGIWCEQDGCVFNTIYCPFCSIPNTCLGVQVMATDSSNVQFLS 1095
Query: 1006 QILFYFDSLVVKNHEETGKGASEEEDLLPVIDSGTDEVAVLNSIDRYSYLP-QPAKSEVW 1064
+ILF+ D L V N + + ++ L ++ D+ VL SIDR++Y P Q +S W
Sbjct: 1096 KILFFADHLEVTNEAASKDSTLKHKEPLAETNAAVDKSDVLKSIDRFAYSPNQQQESGGW 1155
Query: 1065 KIRKSKPRL 1073
+ KSK RL
Sbjct: 1156 RTTKSKLRL 1164
>AT1G20750.1 | Symbols: | RAD3-like DNA-binding helicase protein |
chr1:7203302-7208998 REVERSE LENGTH=1144
Length = 1144
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/1036 (45%), Positives = 627/1036 (60%), Gaps = 123/1036 (11%)
Query: 1 MAVLAARKHYCTNKNILGKENLDEECKLLLKDQA-MGCPEFKNAHKVKGHPSLQKGGSNE 59
M VL +RK YCTN ++ GKEN+DE+C+LLLKD+ + C EF ++ +PSLQ+ G N
Sbjct: 152 MTVLGSRKRYCTNSHVQGKENVDEKCRLLLKDKKNIKCAEFNGVGRILAYPSLQQTGHNG 211
Query: 60 VHDIEDLVKVGQVVKGCSYYAARSMSDDAQLVFCPYSYIINPIIRGAMDVDIRGAIVILD 119
VHDIEDLVK+G+ V G +L+ S+ ++
Sbjct: 212 VHDIEDLVKIGKTVTG-------------RLL---KSFTVH------------------- 236
Query: 120 EAHNIEDITRDAGSVDIEEDVLDKLQVELQQLCSSNTAIYQPLYEMTQGLTSWIEQKKNK 179
N+EDI R+AGS+++EED++ KL+ EL+Q+ IY LYE+ +GL SWI +KK+
Sbjct: 237 --SNMEDIAREAGSINLEEDIIFKLKNELEQMSEVEPEIYDSLYEVVEGLISWIGRKKDS 294
Query: 180 LEKRDFQHYVSCWTGDKALRELEEANISKQCFPILLECATKAIKV--ATDLETDQPRLSG 237
L KRD HY S WTGD+AL+EL+E NI+++ FP L C +AI A +++ D+P LSG
Sbjct: 295 LAKRDVDHYFSNWTGDRALKELKEFNITRENFPNLKACFNQAITKSEAAEIDPDKPYLSG 354
Query: 238 MSVITLEGLFSSLTYFFSRNGSHMLDYQLSLQRCVRKDDRRGFGNWMHTFSLWCLNPAVV 297
+SV TLE LF++LTYFFSRNGSH+LDY++ LQR + RG W +TFSLWC+NP+VV
Sbjct: 355 ISVSTLEELFATLTYFFSRNGSHVLDYEMGLQRSAK----RGDNGWTNTFSLWCMNPSVV 410
Query: 298 FRDVADLSLSVILTSGTLSPMPSFSSELGVQFETSLEAPHVIDVDSQVWPAIISTGPGNY 357
F+D+ADLSLS+ILTSGTLSPM SFSSELG+QF T LEAPHVID + QVW IST PGNY
Sbjct: 411 FKDLADLSLSIILTSGTLSPMNSFSSELGMQFGTCLEAPHVIDPNMQVWAGAISTVPGNY 470
Query: 358 PLNASYKTADAYEFQDAVGRSLEEIFKIVPGGCLVFFPSYKLMEKLCNRWSETGQWSRLH 417
PLNASY+TA+AY FQDA+G+SLEEI IVPGG LVFFPSYKLMEKLC RW ETGQWSRL
Sbjct: 471 PLNASYRTAEAYAFQDALGKSLEEICTIVPGGSLVFFPSYKLMEKLCTRWHETGQWSRLC 530
Query: 418 TEKSLFVEPRGGSQDDFELVLKGYYDSIHHGKRPALGRKRRIKKIDLNHFYTVDSPQDSK 477
+ LF+EPRGGS+DDFE VLK YYDSI GK +GR +KK + QD
Sbjct: 531 LKTDLFIEPRGGSKDDFETVLKEYYDSI-SGKNRLIGRNSSVKKAG----SVITEAQDDS 585
Query: 478 KGGAALLGVCRGKVSEGIDFSDENARVVIIVGIPFPNINDVQVALKKKYNDTFKSSKNLL 537
K G+A L VCRGKVSEG+DFSD+NAR VIIVGIP PN+ D+ V LK+KYNDT KSSKNLL
Sbjct: 586 KRGSAFLAVCRGKVSEGMDFSDDNARAVIIVGIPLPNLGDILVELKRKYNDTNKSSKNLL 645
Query: 538 SGSQWYCHQAFRALNQAAGRCIRHSLDYGAIILL---DERFREERNRALISKWLRRPLRV 594
GS+WYC QA+RALNQAAGRCIRH DYGAII L R + +++ K + ++V
Sbjct: 646 GGSEWYCQQAYRALNQAAGRCIRHRFDYGAIIFLVIVALRLPTTKEQSVYFKVAKASIKV 705
Query: 595 YDSFNLSLEGLKSFFEDAKERFSMNTVHISQNLVFDSDGVQNKEQN--TRLKKNQKLNKS 652
YD+F S+EGL+ FF KER DS +++ EQN + ++N+ + K
Sbjct: 706 YDNFEASMEGLRYFFSSVKER-------------VDSKMLESHEQNLSSENQRNEFVRKE 752
Query: 653 VNGREKDTSMIEDNISIPTLSSHDLAESQLFAQRTSNTYNFEDHINPQ---CCNLTERLT 709
N + +S +E +IP +H + + A+ + + + P+ C +
Sbjct: 753 -NQTQNKSSHVEPKQTIP---AHTFIQVKREAECCKGVIDLDCEVQPEPGYCEESSVTNC 808
Query: 710 EKLPVS--ITHEETSVVKETPCIDVGHDAGSPDYSDAYSNCTIIETSAQFPPDHLSSHQM 767
++ P + ++ + PC +++ S + + +++ QF H+S+
Sbjct: 809 DEDPETSFVSGMINGIATARPCSSSKYESSSLE-----TGLRSLKSPDQFLKRHVSNANF 863
Query: 768 XXXXXXXXXXXXXXXITVTPEKNIATTNIPEMDSSLNLSVNSHNQKRRK----PFINLIE 823
++ +N+ E +S LN+SVNSH KRRK P I +E
Sbjct: 864 RRSPLGAESSVTPERYSIGDMRNMTL----EAESPLNMSVNSHVLKRRKFTTSPIIIDLE 919
Query: 824 EENYGAPCATSLTWYSKSSVAVTEATHGTKPGLERNLKSHSPQIPTSNLPGTCSLTAPLL 883
EEN AP + P+ TS P +
Sbjct: 920 EENSNAP-------------------------------DNRPEDHTS-FTRRIEFGFPEV 947
Query: 884 DKR-LQIFCSLCKNPLGRPENDLFLTCSLISSSKVYLRSLLKQKLKTYTTDTSDSLPVIL 942
D+R ++I CSLC++ L PEN+ + C L SSSK YL SLLK+ T + + S+ VI+
Sbjct: 948 DQRVMRISCSLCRSTLSHPENNSYPICMLTSSSKTYLLSLLKETSGTGSAEMPTSVSVIM 1007
Query: 943 TDSSCVDQRILNRIPKSAPEQGIWCLEDGCVFSTVFCPFCSNRNNLLGVQVMATNSSNVQ 1002
TD S V+QR+ +S+ QGIWC +DGCVF T+FCPFCS N LG+QVMAT+SSNVQ
Sbjct: 1008 TDCSLVNQRLCTN-SESSNGQGIWCQQDGCVFKTIFCPFCSVPNTCLGMQVMATDSSNVQ 1066
Query: 1003 LLEQILFYFDSLVVKN 1018
+ +ILF+ D L V N
Sbjct: 1067 FMSKILFFADHLEVTN 1082
>AT1G79950.1 | Symbols: | RAD3-like DNA-binding helicase protein |
chr1:30073580-30079537 FORWARD LENGTH=1040
Length = 1040
Score = 305 bits (781), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 204/656 (31%), Positives = 314/656 (47%), Gaps = 71/656 (10%)
Query: 1 MAVLAARKHYCTNK--NILGKENLDEECKLLLKDQA-MGCPEFKN-AHKVKGHPSLQKGG 56
M VL +R+ C N+ N L + L C+ L K + C F +K +P +
Sbjct: 171 MVVLGSREQLCVNEEVNSLRGKALTNACQYLCKKRGKRQCNHFNRLPDYLKHNPHI---- 226
Query: 57 SNEVHDIEDLVKVGQVVKGCSYYAARSMSDDAQLVFCPYSYIINPIIRGAMDVDIRGAIV 116
+E DIEDLV +G+ C YY R + D ++F PY+Y+I+ R + V+ +++
Sbjct: 227 GDEPVDIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPYNYLISNGYRKFLKVNWTNSVL 286
Query: 117 ILDEAHNIEDITRDAGSVDIEEDVLDKLQVELQ---QLCSS------NTAIYQPLYEMTQ 167
I DEAHN+E + D+ S D+ +L E Q QL ++ + +I + + +
Sbjct: 287 IFDEAHNLESLCADSASFDLPSVLLSACISEAQECVQLAAARRDSLNDVSINPENFAILK 346
Query: 168 GLTSWIEQ--KKNKLEKRDFQHYVSCWTGDKALRELEEANISKQCFPILLECATKAIKVA 225
GL +++ K + KRD + + G L+ NI+ + P L+ +A A
Sbjct: 347 GLLLKLQELISKVPIPKRD-EGFTK--PGPYIYEMLKSLNITHETAPKLIGTVEEA---A 400
Query: 226 TDLETDQPRLSGMSVITLEGLFSSLTYFFSRNGSHMLD-YQLSLQRCVRKDDRRGFGNWM 284
LE ++ R + + LE + L F NGS+ D Y++ +Q + G
Sbjct: 401 VFLEEEKQRTATNAGSKLEIIADMLKLIFRENGSNHADVYRVHVQELEQNSTDVMKGKVS 460
Query: 285 HTFSLWCLNPAVVFRDVADLSL-SVILTSGTLSPMPSFSSELGVQFETSLEAPHVIDVDS 343
T S WC +P + D+A + S+ILTSGTLSPM S + EL + F LE PHVI +
Sbjct: 461 RTLSWWCFSPGITMLDIAQKGVGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVIS-SN 519
Query: 344 QVWPAIISTGPGNYPLNASYKTADAYEFQDAVGRSLEEIFKIVPGGCLVFFPSYKLMEKL 403
Q+W ++STGP Y LN+SY+ D E++ +G ++ ++VP G L+FFPSY LM+
Sbjct: 520 QLWAGVVSTGPSGYVLNSSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSC 579
Query: 404 CNRW------SETGQWSRLHTEKSLFVEPRGGSQDDFELVLKGYYDSIHHGKRPALGRKR 457
W + W R+ K +EP+ S F ++ + + +
Sbjct: 580 ITFWKNGCYRNSMTVWERICKLKKPVIEPKDSSL--FPAAMRDFSEKL------------ 625
Query: 458 RIKKIDLNHFYTVDSPQDSKKGGAALLGVCRGKVSEGIDFSDENARVVIIVGIPFPNIND 517
QD G VCRGKVSEG+DF+D R V+I G+P+ + D
Sbjct: 626 ----------------QDRATSGVVFFAVCRGKVSEGLDFADGAGRAVVITGLPYARVTD 669
Query: 518 VQVALKKKY-------NDTFKSSKNLLSGSQWYCHQAFRALNQAAGRCIRHSLDYGAIIL 570
+V LK+++ D LLSGS WY +A RA+NQA GR IRH DYGAII
Sbjct: 670 PRVKLKREFLDEQSQLADVKLPRSTLLSGSMWYSQEAARAVNQAIGRVIRHRHDYGAIIF 729
Query: 571 LDERFREERNRALISKWLRRPLRVYDSFNLSLEGLKSFFEDAKERFSMNTVHISQN 626
D+RF + ++ IS W+R ++ Y + + L FF + F V +N
Sbjct: 730 CDDRFEQPSQQSKISLWIRPNVKCYSRYGEVISDLARFFRTERSNFPARLVTEQEN 785
>AT1G03190.2 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase
protein | chr1:775822-779863 FORWARD LENGTH=758
Length = 758
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 158/651 (24%), Positives = 265/651 (40%), Gaps = 118/651 (18%)
Query: 4 LAARKHYCTNKNILGKEN---LDEECKLLLKDQAMG----------CPEFKNAHKVKGHP 50
L++RK+ C N +L EN +D C+ C F+N K +
Sbjct: 109 LSSRKNLCVNTKVLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENA 168
Query: 51 SLQKGGSNEVHDIEDLVKVGQVVKGCSYYAARSMSDDAQLVFCPYSYIINPIIRGAMDVD 110
L G V+ +EDL G+ C Y+ AR M A ++ Y Y+++P + G + +
Sbjct: 169 LLPPG----VYTLEDLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKE 224
Query: 111 I-RGAIVILDEAHNIEDITRDAGSVDIEEDVLD-------KLQVELQQLCSSNTAIYQPL 162
+ + ++V+ DEAHNI+++ +A SV + L+ K++ E+ + +++ +
Sbjct: 225 LQKESVVVFDEAHNIDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAE 284
Query: 163 Y-EMTQGLTSWIEQKKNKLEKRDFQHYVSCWTGDKAL-----RELEEANISK-QCFPILL 215
Y + +GL + L D W + AL +E NI + + F +L
Sbjct: 285 YNRLVEGLAL-----RGDLSGGD------QWLANPALPHDILKEAVPGNIRRAEHFVHVL 333
Query: 216 ECATKAIKVATD---LETDQPRLSGMSVITLEGL-FSSLTYFFSRNGSHML-------DY 264
+ + V D +E + P S+ + G+ +L + + R S ML D
Sbjct: 334 RRLLQYLGVRLDTENVEKESPVSFVSSLNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDE 393
Query: 265 QLSLQRCVRKDDRRGFGNWMHTFS-------------------LWCLNPAVVFRDVADLS 305
L +Q D G + FS L C + ++ + V D
Sbjct: 394 FLPIQTVC--DFATLVGTYARGFSIIIEPYDERMPHIPDPILQLSCHDASLAIKPVFDRF 451
Query: 306 LSVILTSGTLSPMPSFSSELGVQFETSLEAPHVIDVDSQVWPAIISTGPGNYPLNASYKT 365
SV++TSGTLSP+ + L S + D + P +++ G P++ +
Sbjct: 452 QSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDC-ICPMVLTRGSDQLPVSTKFDM 510
Query: 366 ADAYEFQDAVGRSLEEIFKIVPGGCLVFFPSYKLMEKLCNRWSETGQWSRLHTEKSLFVE 425
G+ L E+ IVP G + FF SY M+ + W+ETG + +K +F+E
Sbjct: 511 RSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDGIIATWNETGILKEIMQQKLVFIE 570
Query: 426 PRGGSQDDFE--LVLKGYYDSIHHGKRPALGRKRRIKKIDLNHFYTVDSPQDSKKGGAAL 483
+QD E L L Y + G+ GA
Sbjct: 571 ----TQDVVETTLALDNYRRACDCGR------------------------------GAVF 596
Query: 484 LGVCRGKVSEGIDFSDENARVVIIVGIPFP-NINDVQVALKKKYNDTFKSSKNLLSGSQW 542
V RGKV+EGIDF R+V++ G+PF ++ + A + +DTF+ + +
Sbjct: 597 FSVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQ-----IKEGDF 651
Query: 543 YCHQAFRALNQAAGRCIRHSLDYGAIILLDERFREERNRALISKWLRRPLR 593
A R Q GR IR DYG +I D+R+ R+ + W+ LR
Sbjct: 652 LTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR 702
>AT1G03190.1 | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase
protein | chr1:775822-779863 FORWARD LENGTH=758
Length = 758
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 158/651 (24%), Positives = 265/651 (40%), Gaps = 118/651 (18%)
Query: 4 LAARKHYCTNKNILGKEN---LDEECKLLLKDQAMG----------CPEFKNAHKVKGHP 50
L++RK+ C N +L EN +D C+ C F+N K +
Sbjct: 109 LSSRKNLCVNTKVLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENA 168
Query: 51 SLQKGGSNEVHDIEDLVKVGQVVKGCSYYAARSMSDDAQLVFCPYSYIINPIIRGAMDVD 110
L G V+ +EDL G+ C Y+ AR M A ++ Y Y+++P + G + +
Sbjct: 169 LLPPG----VYTLEDLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKE 224
Query: 111 I-RGAIVILDEAHNIEDITRDAGSVDIEEDVLD-------KLQVELQQLCSSNTAIYQPL 162
+ + ++V+ DEAHNI+++ +A SV + L+ K++ E+ + +++ +
Sbjct: 225 LQKESVVVFDEAHNIDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAE 284
Query: 163 Y-EMTQGLTSWIEQKKNKLEKRDFQHYVSCWTGDKAL-----RELEEANISK-QCFPILL 215
Y + +GL + L D W + AL +E NI + + F +L
Sbjct: 285 YNRLVEGLAL-----RGDLSGGD------QWLANPALPHDILKEAVPGNIRRAEHFVHVL 333
Query: 216 ECATKAIKVATD---LETDQPRLSGMSVITLEGL-FSSLTYFFSRNGSHML-------DY 264
+ + V D +E + P S+ + G+ +L + + R S ML D
Sbjct: 334 RRLLQYLGVRLDTENVEKESPVSFVSSLNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDE 393
Query: 265 QLSLQRCVRKDDRRGFGNWMHTFS-------------------LWCLNPAVVFRDVADLS 305
L +Q D G + FS L C + ++ + V D
Sbjct: 394 FLPIQTVC--DFATLVGTYARGFSIIIEPYDERMPHIPDPILQLSCHDASLAIKPVFDRF 451
Query: 306 LSVILTSGTLSPMPSFSSELGVQFETSLEAPHVIDVDSQVWPAIISTGPGNYPLNASYKT 365
SV++TSGTLSP+ + L S + D + P +++ G P++ +
Sbjct: 452 QSVVITSGTLSPIDLYPRLLNFTPVVSRSFKMSMTRDC-ICPMVLTRGSDQLPVSTKFDM 510
Query: 366 ADAYEFQDAVGRSLEEIFKIVPGGCLVFFPSYKLMEKLCNRWSETGQWSRLHTEKSLFVE 425
G+ L E+ IVP G + FF SY M+ + W+ETG + +K +F+E
Sbjct: 511 RSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDGIIATWNETGILKEIMQQKLVFIE 570
Query: 426 PRGGSQDDFE--LVLKGYYDSIHHGKRPALGRKRRIKKIDLNHFYTVDSPQDSKKGGAAL 483
+QD E L L Y + G+ GA
Sbjct: 571 ----TQDVVETTLALDNYRRACDCGR------------------------------GAVF 596
Query: 484 LGVCRGKVSEGIDFSDENARVVIIVGIPFP-NINDVQVALKKKYNDTFKSSKNLLSGSQW 542
V RGKV+EGIDF R+V++ G+PF ++ + A + +DTF+ + +
Sbjct: 597 FSVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQ-----IKEGDF 651
Query: 543 YCHQAFRALNQAAGRCIRHSLDYGAIILLDERFREERNRALISKWLRRPLR 593
A R Q GR IR DYG +I D+R+ R+ + W+ LR
Sbjct: 652 LTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR 702
>AT1G79890.1 | Symbols: | RAD3-like DNA-binding helicase protein |
chr1:30048655-30052203 FORWARD LENGTH=882
Length = 882
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 146/318 (45%), Gaps = 70/318 (22%)
Query: 292 LNPAVVFRDVADLSLSVILTSGTLSPMPSFSSEL-------GVQFETSLEAPHVIDVDSQ 344
L A +F +V D + +VIL GTL P+ L +QF H++ +S
Sbjct: 544 LTGAKLFSEVVDEAHAVILAGGTLQPIEETRERLFPWLPSNQLQF---FSCSHIVPPES- 599
Query: 345 VWPAIISTGPGNYPLNASYKTADAYEFQDAVGRSLEEIFKIVPGGCLVFFPSYKLMEKLC 404
+ P +S GP + S+ + + +G + + +VP G +VFF S++ ++
Sbjct: 600 IMPIAVSHGPSGQSFDFSHSSRSSIGMIQELGLLMSNLVAVVPEGIIVFFSSFEYETQVH 659
Query: 405 NRWSETGQWSRLHTEKSLFVEPRGGSQDDFELVLKGYYDSIHHGKRPALGRKRRIKKIDL 464
WS +G R+ +K +F EPR ++ E VL+ Y ++I +
Sbjct: 660 TAWSNSGILRRIVKKKRVFREPRKNTE--VEAVLRDYKEAIESER--------------- 702
Query: 465 NHFYTVDSPQDSKKGGAALLGVCRGKVSEGIDFSDENARVVIIVGIPFPNINDVQVALKK 524
GA +L V GKVSEGI+FSD R V++VG+P+P+ +D+++ +
Sbjct: 703 ---------------GAIMLAVVGGKVSEGINFSDSMCRCVVMVGLPYPSPSDIELLERI 747
Query: 525 KY------NDTFKSSKNLLS---------------------GSQWYCHQAFRALNQAAGR 557
K+ +D+ K S L+ G ++Y + +A+NQ+ GR
Sbjct: 748 KHIEGRADSDSIKPSVTLVDDSYYSGDVQAGFGVLKSCKRRGKEYYENLCMKAVNQSIGR 807
Query: 558 CIRHSLDYGAIILLDERF 575
IRH DY +I+L+D R+
Sbjct: 808 AIRHEKDYASILLVDARY 825
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 32/150 (21%)
Query: 4 LAARKHYCTNKNILG------------------------KENLDEECKLLLKDQAMGCPE 39
L +RK+ C N+++L K+NL +++ + CP
Sbjct: 216 LGSRKNLCINEDVLKLGNVTRINERCLDLQKKKISQVSKKKNLGANVRIVRTKASCRCPM 275
Query: 40 FKNAHKVKGH---PSLQKGGSNEVHDIEDLVKVGQVVKGCSYYAARSMSDDAQLVFCPYS 96
+ HK++ S Q+ E DIEDLV++G+ ++ C YY +R M+ A LV PY
Sbjct: 276 LRK-HKLQREFKAESFQQ----EAMDIEDLVQLGREMRTCPYYGSRRMAPAADLVILPYQ 330
Query: 97 YIINPIIRGAMDVDIRGAIVILDEAHNIED 126
+++ R ++ + ++ ++VI+DEAHN+ D
Sbjct: 331 SLLSKSSRESLGLSLKNSVVIIDEAHNLAD 360