Miyakogusa Predicted Gene

Lj5g3v0091590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0091590.1 Non Chatacterized Hit- tr|D8RPH8|D8RPH8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,32.67,0.000000000003,seg,NULL,gene.g58321.t1.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12650.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   165   2e-41

>AT3G12650.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
           growth stages; Has 31 Blast hits to 31 proteins in 12
           species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
           0; Plants - 31; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr3:4017881-4018597 REVERSE
           LENGTH=238
          Length = 238

 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 99/143 (69%)

Query: 49  KHQEIEGPTVERDLSPLANETREVLETTMKNVYGLSRXXXXXXXXXXXXXXWITYVTRSS 108
           KHQEIEGPTVERDLS L NETR+VLE  MKN+Y LS                I Y TR+ 
Sbjct: 95  KHQEIEGPTVERDLSALGNETRQVLEGMMKNMYSLSGAMGALGLTQLILGAAILYATRAD 154

Query: 109 PITEVSVQSFVAFALPFSLAFMLRQCLKPMHFLKKMEEQGRLQILTLTMQVAKQLNAFFV 168
           P+ E+++QS +AF  PF++A M+R+ LKPM+F KKMEE GRLQILTLT+QVAK LN  FV
Sbjct: 155 PMKEMTIQSCIAFGFPFAMALMVRRSLKPMYFFKKMEELGRLQILTLTLQVAKNLNLLFV 214

Query: 169 RVRGVSFLCIVGMSAGLVFAVFS 191
           R R VS LC+V +  G +F + S
Sbjct: 215 RARVVSILCVVALCFGNLFLLLS 237