Miyakogusa Predicted Gene

Lj4g3v3113250.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113250.1 tr|B3H572|B3H572_ARATH Nucleotide excision
repair, TFIIH, subunit TTDA OS=Arabidopsis thaliana
GN=At,59.72,5e-18,Tbf5,Nucleotide excision repair, TFIIH, subunit
TTDA; no description,Nucleotide excision repair, TFI,CUFF.52333.1
         (70 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12400.1 | Symbols:  | Nucleotide excision repair, TFIIH, sub...   113   2e-26
AT1G62886.1 | Symbols:  | Nucleotide excision repair, TFIIH, sub...    95   8e-21

>AT1G12400.1 | Symbols:  | Nucleotide excision repair, TFIIH,
          subunit TTDA | chr1:4222296-4222603 FORWARD LENGTH=71
          Length = 71

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 60/69 (86%)

Query: 1  MVNATKGVFISCDIPMAQYIINMNASMPASDKFIIHILDNTHMFVQPHVEQMIRSQMAKF 60
          MVNA KGVF+SCDIPM Q+I+NMN SMP S KFIIH+LD+TH+FVQPHVEQMIRS ++ F
Sbjct: 1  MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 61 REDNTYVKP 69
          R+ N+Y KP
Sbjct: 61 RDQNSYEKP 69


>AT1G62886.1 | Symbols:  | Nucleotide excision repair, TFIIH,
          subunit TTDA | chr1:23294413-23294710 FORWARD LENGTH=72
          Length = 72

 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 57/72 (79%), Gaps = 2/72 (2%)

Query: 1  MVNATKGVFISCDIPMAQYIINMNASMPASDKFIIHI--LDNTHMFVQPHVEQMIRSQMA 58
          MVN+ KGVFISCD+PMAQ+I ++N S+PAS KFII +  LD T MFV+P+ E+MIR  + 
Sbjct: 1  MVNSIKGVFISCDVPMAQFIAHLNNSLPASQKFIIQVLKLDTTSMFVKPYAEEMIRDAVI 60

Query: 59 KFREDNTYVKPN 70
          KFR++N+Y K N
Sbjct: 61 KFRDENSYAKAN 72