Miyakogusa Predicted Gene

Lj4g3v3059270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3059270.1 Non Chatacterized Hit- tr|K4BX37|K4BX37_SOLLC
Uncharacterized protein OS=Solanum lycopersicum GN=Sol,73.91,3e-37,no
description,NULL; POLY(A) POLYMERASE-RELATED,NULL; POLY(A)
POLYMERASE,NULL; PAP_central,Poly(A) p,CUFF.52208.1
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877...   160   2e-40
AT1G17980.2 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877...   158   9e-40
AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   129   4e-31
AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymeras...   129   4e-31
AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   129   4e-31
AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   129   4e-31
AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase | chr4...   129   4e-31
AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   129   4e-31
AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   129   4e-31
AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   129   4e-31
AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   129   4e-31
AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   129   4e-31
AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   129   5e-31
AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   129   5e-31
AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   129   5e-31
AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   129   6e-31
AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 | chr3:20444...    87   3e-18

>AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 |
           chr1:6187742-6191418 REVERSE LENGTH=713
          Length = 713

 Score =  160 bits (405), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/92 (79%), Positives = 83/92 (90%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           MPEVTELHPVP+A VPLM FK+NGVSIDL+YA+L L VIPEDLD+SQDS+LQNADEQTVR
Sbjct: 132 MPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNADEQTVR 191

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+TD+IL LVPNIQNF+  LRC+R WA
Sbjct: 192 SLNGCRVTDQILRLVPNIQNFRTTLRCMRFWA 223


>AT1G17980.2 | Symbols: PAPS1 | poly(A) polymerase 1 |
          chr1:6187742-6190318 REVERSE LENGTH=586
          Length = 586

 Score =  158 bits (399), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 83/92 (90%)

Query: 1  MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
          MPEVTELHPVP+A VPLM FK+NGVSIDL+YA+L L VIPEDLD+SQDS+LQNADEQTVR
Sbjct: 5  MPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNADEQTVR 64

Query: 61 SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
          SLN CR+TD+IL LVPNIQNF+  LRC+R WA
Sbjct: 65 SLNGCRVTDQILRLVPNIQNFRTTLRCMRFWA 96


>AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854443 FORWARD LENGTH=765
          Length = 765

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTELHPVP+A VP+MKFK  G+ IDL+YA +SLLV+P+DLDIS  SVL   DE TVR
Sbjct: 142 MEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEPTVR 201

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 202 SLNGCRVADQILKLVPNFEHFRTTLRCLKYWA 233


>AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymerase |
           chr4:15850134-15854375 FORWARD LENGTH=741
          Length = 741

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTELHPVP+A VP+MKFK  G+ IDL+YA +SLLV+P+DLDIS  SVL   DE TVR
Sbjct: 142 MEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEPTVR 201

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 202 SLNGCRVADQILKLVPNFEHFRTTLRCLKYWA 233


>AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=738
          Length = 738

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTELHPVP+A VP+MKFK  G+ IDL+YA +SLLV+P+DLDIS  SVL   DE TVR
Sbjct: 142 MEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEPTVR 201

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 202 SLNGCRVADQILKLVPNFEHFRTTLRCLKYWA 233


>AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=738
          Length = 738

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTELHPVP+A VP+MKFK  G+ IDL+YA +SLLV+P+DLDIS  SVL   DE TVR
Sbjct: 142 MEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEPTVR 201

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 202 SLNGCRVADQILKLVPNFEHFRTTLRCLKYWA 233


>AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854266 FORWARD LENGTH=745
          Length = 745

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTELHPVP+A VP+MKFK  G+ IDL+YA +SLLV+P+DLDIS  SVL   DE TVR
Sbjct: 142 MEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEPTVR 201

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 202 SLNGCRVADQILKLVPNFEHFRTTLRCLKYWA 233


>AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=745
          Length = 745

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTELHPVP+A VP+MKFK  G+ IDL+YA +SLLV+P+DLDIS  SVL   DE TVR
Sbjct: 142 MEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEPTVR 201

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 202 SLNGCRVADQILKLVPNFEHFRTTLRCLKYWA 233


>AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=745
          Length = 745

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTELHPVP+A VP+MKFK  G+ IDL+YA +SLLV+P+DLDIS  SVL   DE TVR
Sbjct: 142 MEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEPTVR 201

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 202 SLNGCRVADQILKLVPNFEHFRTTLRCLKYWA 233


>AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=735
          Length = 735

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTELHPVP+A VP+MKFK  G+ IDL+YA +SLLV+P+DLDIS  SVL   DE TVR
Sbjct: 142 MEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEPTVR 201

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 202 SLNGCRVADQILKLVPNFEHFRTTLRCLKYWA 233


>AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15853810 FORWARD LENGTH=730
          Length = 730

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTELHPVP+A VP+MKFK  G+ IDL+YA +SLLV+P+DLDIS  SVL   DE TVR
Sbjct: 142 MEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEPTVR 201

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 202 SLNGCRVADQILKLVPNFEHFRTTLRCLKYWA 233


>AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15853906 FORWARD LENGTH=716
          Length = 716

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTELHPVP+A VP+MKFK  G+ IDL+YA +SLLV+P+DLDIS  SVL   DE TVR
Sbjct: 142 MEEVTELHPVPDAHVPVMKFKFQGIPIDLLYASISLLVVPQDLDISSSSVLCEVDEPTVR 201

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 202 SLNGCRVADQILKLVPNFEHFRTTLRCLKYWA 233


>AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=786
          Length = 786

 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTEL PV +A VP+MKFK  G+SIDL+YA +SLLVIP+DLDIS  SVL + DEQTVR
Sbjct: 144 MEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNSSVLCDVDEQTVR 203

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 204 SLNGCRVADQILKLVPNSEHFRTTLRCLKYWA 235


>AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=787
          Length = 787

 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTEL PV +A VP+MKFK  G+SIDL+YA +SLLVIP+DLDIS  SVL + DEQTVR
Sbjct: 144 MEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNSSVLCDVDEQTVR 203

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 204 SLNGCRVADQILKLVPNSEHFRTTLRCLKYWA 235


>AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=797
          Length = 797

 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTEL PV +A VP+MKFK  G+SIDL+YA +SLLVIP+DLDIS  SVL + DEQTVR
Sbjct: 144 MEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNSSVLCDVDEQTVR 203

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 204 SLNGCRVADQILKLVPNSEHFRTTLRCLKYWA 235


>AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026123-11030440 REVERSE LENGTH=800
          Length = 800

 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 1   MPEVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVR 60
           M EVTEL PV +A VP+MKFK  G+SIDL+YA +SLLVIP+DLDIS  SVL + DEQTVR
Sbjct: 144 MEEVTELQPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNSSVLCDVDEQTVR 203

Query: 61  SLNSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           SLN CR+ D+IL LVPN ++F+  LRC++ WA
Sbjct: 204 SLNGCRVADQILKLVPNSEHFRTTLRCLKYWA 235


>AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 |
           chr3:2044443-2047034 FORWARD LENGTH=507
          Length = 507

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 62/90 (68%)

Query: 3   EVTELHPVPNASVPLMKFKVNGVSIDLIYARLSLLVIPEDLDISQDSVLQNADEQTVRSL 62
           EV+ELH V +A VPL++FK +G+ +DL YA+L +L IP ++D+     L++ DE + + L
Sbjct: 122 EVSELHCVKDAKVPLIRFKFDGILVDLPYAQLRVLSIPNNVDVLNPFFLRDIDETSWKIL 181

Query: 63  NSCRMTDKILHLVPNIQNFQMALRCIRLWA 92
           +  R    IL LVP+++ FQ  LRC++LWA
Sbjct: 182 SGVRANKCILQLVPSLELFQSLLRCVKLWA 211