Miyakogusa Predicted Gene

Lj4g3v3003880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3003880.1 Non Chatacterized Hit- tr|I1IZD3|I1IZD3_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,25.49,2e-18,seg,NULL; LRR_6,NULL; RNI-like,NULL; L
domain-like,NULL; LRR,Leucine-rich repeat; Leucine-rich
repea,CUFF.52022.1
         (579 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23840.1 | Symbols:  | Leucine-rich repeat (LRR) family prote...   442   e-124
AT1G15740.1 | Symbols:  | Leucine-rich repeat family protein | c...    72   1e-12
AT3G07550.2 | Symbols:  | RNI-like superfamily protein | chr3:24...    52   9e-07
AT3G07550.1 | Symbols:  | RNI-like superfamily protein | chr3:24...    52   9e-07
AT5G27920.1 | Symbols:  | F-box family protein | chr5:9942063-99...    52   1e-06

>AT4G23840.1 | Symbols:  | Leucine-rich repeat (LRR) family protein
           | chr4:12400379-12403190 FORWARD LENGTH=597
          Length = 597

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/526 (49%), Positives = 343/526 (65%), Gaps = 10/526 (1%)

Query: 5   ESGLIKLCIDAACDSKESIDRWRLQKRSLDRLPSPLADAXXXXXXXXXXXXXXXXEVFKR 64
           ES L++LC+  AC S ++++RWRLQ+RSL+ LP  LADA                E FK 
Sbjct: 2   ESPLVRLCLKEACKSGDAVERWRLQRRSLESLPPHLADALLRRLLKKRLLFPSLLEGFKY 61

Query: 65  SAEEVDLRGENHVDAQWMAYLGAFRYLRYLNVADCHRITNSALWPLTGMTSLKELDLSRC 124
           S E +DLRG++ V+A+WMAY+G F  L  LN++DC RI +S LWP+TG+TSL ELDLSRC
Sbjct: 62  SVENIDLRGKSSVNAEWMAYIGGFVNLITLNLSDCQRINSSTLWPITGLTSLTELDLSRC 121

Query: 125 SKVDDGAIDHILSIPNLEKLHISETSVTAKGVKLLASLGNLSHLDLGGLPVDDITLTSLQ 184
            KV D  + H+ S+ NL+KL IS+T VT  G+ LLASL  LS LDLGGLPV D  L SLQ
Sbjct: 122 FKVTDAGMKHLQSVVNLKKLWISQTGVTEVGISLLASLKKLSLLDLGGLPVTDQNLISLQ 181

Query: 185 VLKKLQYIDLWGSEISNEGAVVLNLFPRLTHLNLAWTNVTKLPNLSSLEFLNMSNCTIDS 244
            L KL+Y+D+WGS ++N+GAV +  F  L+ LNL+WT++T+ PN+  LE L+M+ CTI S
Sbjct: 182 ALTKLEYLDIWGSNVTNQGAVSILKFSNLSFLNLSWTSITQTPNIPHLECLHMNTCTIVS 241

Query: 245 ILQDGKS--PLAKLILSGTTFLNEAEALLHINTNFLSYLDVAHSGLHRFFFLSKMKVIEH 302
             +   S   L KL+LSG  F  E E+L   N + ++YLDV+ + L  F FL  M  +EH
Sbjct: 242 EPKTHSSLASLKKLVLSGANFSAETESLSFTNKSCITYLDVSKTSLKNFSFLETMFNLEH 301

Query: 303 LNLSS-CMSDDSVEMVACIGGNLKSLNLSCTAVSSAGLGVLAGHVPNLEILSLSQTPVDD 361
           L+LSS    DDSV  VAC+G NLK+LN+S T ++ +G+G LAGHVP LE LS+SQT VDD
Sbjct: 302 LDLSSTAFGDDSVGFVACVGENLKNLNVSDTQITPSGVGNLAGHVPQLETLSMSQTFVDD 361

Query: 362 TAIPFIG-MMPSLKVVDLSKTNITGFL----PQGDRDISFSLTALQDLKQLESLNMEGTP 416
            +I  I   MP +K +DL   +  GF     PQ +++   SL ALQ L  LE+L++E   
Sbjct: 362 LSILLISTTMPCIKALDLGMNSTLGFYYLISPQEEKEK--SLAALQSLTSLETLSLEHPY 419

Query: 417 VGGSALYPLSSFQELRCLSLESASLADITLFYISSIPKLTNLSILDALLTNYGLDMFEAP 476
           +G  AL  LSS   L  LSL S SL D TL ++SS+P L +L + D +LT+ GL+ F  P
Sbjct: 420 LGDKALSGLSSLTGLTHLSLTSTSLTDSTLHHLSSLPNLVSLGVRDGVLTSNGLEKFRPP 479

Query: 477 ETLKLLDIRGCWLLTKDTILSFCRNYPQIEVRHELLTLPPFEENAL 522
             L+ LD++GCWLLTKD I   C+ YP I+VRHE       ++N L
Sbjct: 480 NRLRTLDLQGCWLLTKDDIAGLCKRYPHIKVRHEHADSSSLDQNQL 525


>AT1G15740.1 | Symbols:  | Leucine-rich repeat family protein |
           chr1:5411509-5414544 FORWARD LENGTH=585
          Length = 585

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 201/474 (42%), Gaps = 98/474 (20%)

Query: 69  VDLRGENHVDAQWMAYLGAFRYLRYLNVADCHRITNSALWPLTGMTSLKELDLSRCSKVD 128
           VD  G +  D+  ++  G    L  LN   C +I+N  L  L+G+++L  L   R     
Sbjct: 143 VDFSGSDITDSGLVSLKGCTN-LESLNFNFCDQISNRGLVHLSGLSNLTSLSFRR----- 196

Query: 129 DGAIDHILSIPNLEKLHISETSVTAKGVKLLASLGNLSHLDLGGLPVDDITLTSLQVLKK 188
                                ++TA+G++ L++L NL  LDL   P  D  L  L+ L K
Sbjct: 197 -------------------NAAITAQGMRALSNLVNLKKLDLEKCPGIDGGLVHLRALTK 237

Query: 189 LQYIDL-WGSEISNEGAVVLNLFPRLTHLNLAWTNVTKLPNLSSLEFLNMSNCTIDSILQ 247
           L+ +++ W + I++     L++   L  L +  + +T +     + +L   N      L+
Sbjct: 238 LESLNIKWCNCITDADMEPLSVLTNLRSLQICCSKITDI----GISYLKGLNKLNLLNLE 293

Query: 248 DGKSPLAKLILSGTTFLNEAEALLHINTNFLSYLDVAHSGLHRFFFLSKMKV-------- 299
             +   A  + + T        L+++N N  ++ D   SG  +F  L  +K+        
Sbjct: 294 GCRHVTAACLDTLTAL----AGLMYLNLNRCNFSD---SGCEKFSDLINLKILNLGMNNI 346

Query: 300 -------------IEHLNLSSCMSDDSVEMVACIGG--NLKSLNLSCTAVSSAGLGVLAG 344
                        +E LNL SC   D  E +  + G   LKSL LS T V S GL  L+G
Sbjct: 347 TNSCLVHLKGLTKLESLNLDSCRIGD--EGLVHLSGMLELKSLELSDTEVGSNGLRHLSG 404

Query: 345 HVPNLEILSLSQTPVDDTAIPFIGMMPSLKVVDLSKTNITGFLPQGDRDISFSLTALQDL 404
            + NLE ++LS T V D+ +  +  + SL+ ++L   ++T             L+AL  L
Sbjct: 405 -LSNLESINLSFTVVTDSGLRKLSGLTSLRTLNLDARHVT----------DAGLSALTSL 453

Query: 405 KQLESLNMEGTPVGGSALYPLSSFQELRCLSL-------------------------ESA 439
             L  L++ G  +  S    L + ++L+ L +                         +++
Sbjct: 454 TGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTGVKNIKDLSSLTLLNLSQNS 513

Query: 440 SLADITLFYISSIPKLTNLSILDALLTNYGLDMFEAPETLKLLDIRGCWLLTKD 493
           +L D TL  IS +  L +L++ ++ +++ GL   +  + L+ L +  C L   D
Sbjct: 514 NLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLRSLTLESCKLSAND 567


>AT3G07550.2 | Symbols:  | RNI-like superfamily protein |
           chr3:2409946-2411133 FORWARD LENGTH=395
          Length = 395

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 25/236 (10%)

Query: 282 DVAHSGLHRFFFLSKMKVIEHLNLSSC--MSDDSVEMVACIGGNLKSLNLSCT-AVSSAG 338
           DV+   LHR   L++ + +EHL+LS C  ++D S++ +   G  L +L L C   +S  G
Sbjct: 77  DVSSHHLHRL--LTRFQWLEHLSLSGCTVLNDSSLDSLRYPGARLHTLYLDCCFGISDDG 134

Query: 339 LGVLAGHVPNLEILSLSQTPVDDTAIPFIGMMP-SLKVVDLSKTNITGFLPQGDRDISFS 397
           +  +A   PNL ++SL +  + D  +  +     SLK V+LS   +            F 
Sbjct: 135 ISTIASFCPNLSVVSLYRCNISDIGLETLARASLSLKCVNLSYCPLVS---------DFG 185

Query: 398 LTAL-QDLKQLESLNMEG----TPVGGSALYPLSSFQELRCLSLESASLADITLFYISSI 452
           + AL Q   QLES+ +      T VG S   P   + +     LE   +  I        
Sbjct: 186 IKALSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITGII---SGGG 242

Query: 453 PKLTNLSILDALLTNYGLDMFEA--PETLKLLDIRGCWLLTKDTILSFCRNYPQIE 506
            +  N+S +   +   GL    +     L++L++R C  +  ++I +  +  P ++
Sbjct: 243 IEFLNISGVSCYIRKDGLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGCPLLQ 298


>AT3G07550.1 | Symbols:  | RNI-like superfamily protein |
           chr3:2409946-2411133 FORWARD LENGTH=395
          Length = 395

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 25/236 (10%)

Query: 282 DVAHSGLHRFFFLSKMKVIEHLNLSSC--MSDDSVEMVACIGGNLKSLNLSCT-AVSSAG 338
           DV+   LHR   L++ + +EHL+LS C  ++D S++ +   G  L +L L C   +S  G
Sbjct: 77  DVSSHHLHRL--LTRFQWLEHLSLSGCTVLNDSSLDSLRYPGARLHTLYLDCCFGISDDG 134

Query: 339 LGVLAGHVPNLEILSLSQTPVDDTAIPFIGMMP-SLKVVDLSKTNITGFLPQGDRDISFS 397
           +  +A   PNL ++SL +  + D  +  +     SLK V+LS   +            F 
Sbjct: 135 ISTIASFCPNLSVVSLYRCNISDIGLETLARASLSLKCVNLSYCPLVS---------DFG 185

Query: 398 LTAL-QDLKQLESLNMEG----TPVGGSALYPLSSFQELRCLSLESASLADITLFYISSI 452
           + AL Q   QLES+ +      T VG S   P   + +     LE   +  I        
Sbjct: 186 IKALSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITGII---SGGG 242

Query: 453 PKLTNLSILDALLTNYGLDMFEA--PETLKLLDIRGCWLLTKDTILSFCRNYPQIE 506
            +  N+S +   +   GL    +     L++L++R C  +  ++I +  +  P ++
Sbjct: 243 IEFLNISGVSCYIRKDGLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGCPLLQ 298


>AT5G27920.1 | Symbols:  | F-box family protein |
           chr5:9942063-9944507 REVERSE LENGTH=642
          Length = 642

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 177/419 (42%), Gaps = 50/419 (11%)

Query: 91  LRYLNVADCHRITNSALWPLTGMTSLKELDLSRCSKVDDGAIDHIL-SIPNLEKLHISET 149
           L  ++V+ C    +     L+  T L+EL + +C  + D  +  I+    NL K+ +   
Sbjct: 123 LERVDVSHCWGFGDREAAALSSATGLRELKMDKCLSLSDVGLARIVVGCSNLNKISLKWC 182

Query: 150 -SVTAKGVKLLASL-GNLSHLDLGGLPVDDITLTSLQVLKKLQYIDLWGSEISNEGAVVL 207
             ++  G+ LL  +   L  LD+  L + + ++ S+ +L KL+ +D+    + ++G +  
Sbjct: 183 MEISDLGIDLLCKICKGLKSLDVSYLKITNDSIRSIALLVKLEVLDMVSCPLIDDGGLQF 242

Query: 208 --NLFPRLTHLNLAWTNVTKLPNLSS-------LEFLNMSNCTIDSILQDGKSPLAKLIL 258
             N  P L  +++   +   L  L S       ++ L  S+C  +              +
Sbjct: 243 LENGSPSLQEVDVTRCDRVSLSGLISIVRGHPDIQLLKASHCVSE--------------V 288

Query: 259 SGTTFLNEAEALLHINTNFLSYLDVAH-SGLHRFFFLSKMKVIEHLNLSSCMSDDSVEMV 317
           SG +FL   + L H+ T    ++D AH S        S  + +  + LS C+    + M+
Sbjct: 289 SG-SFLKYIKGLKHLKT---IWIDGAHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMI 344

Query: 318 A----CIGGNLKSLNLSCTA-VSSAGLGVLAGHVPNLEILSLSQTP-VDDTAIPFIGMMP 371
           +    C+  NLK+LNL+C   V+   +  +A    NL  L L     + +  +  +G   
Sbjct: 345 SLARNCL--NLKTLNLACCGFVTDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLGCY- 401

Query: 372 SLKVVDLSKTNITGFLPQGDRDISFSLTALQDLKQLESLNM--EGTPVGGSALYPLSSFQ 429
           S+ V +L  T+  G   +G   IS   + LQ LK     N+  +G    GS    L    
Sbjct: 402 SMLVQELDLTDCYGVNDRGLEYIS-KCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELD 460

Query: 430 ELRCLSLESASLADITLFYISSIPKLTNLSILDAL--LTNYGLDMFEAPETLKLLDIRG 486
             RC     A   D  L  +S   K  N  IL     LT+ G++     E L  L++RG
Sbjct: 461 LYRC-----AGFGDDGLAALSRGCKSLNRLILSYCCELTDTGVEQIRQLELLSHLELRG 514