Miyakogusa Predicted Gene

Lj4g3v3002500.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3002500.1 Non Chatacterized Hit- tr|I3S1Y2|I3S1Y2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.33,0,ATP_synth_E_arch,ATPase, V1/A1 complex, subunit E;
coiled-coil,NULL; seg,NULL; VACUOLAR ATP SYNTHASE,CUFF.51996.1
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64200.1 | Symbols: VHA-E3 | vacuolar H+-ATPase subunit E iso...   312   1e-85
AT4G11150.1 | Symbols: TUF, emb2448, TUFF, VHA-E1 | vacuolar ATP...   308   3e-84
AT3G08560.1 | Symbols: VHA-E2 | vacuolar H+-ATPase subunit E iso...   266   1e-71

>AT1G64200.1 | Symbols: VHA-E3 | vacuolar H+-ATPase subunit E
           isoform 3 | chr1:23828537-23830002 REVERSE LENGTH=237
          Length = 237

 Score =  312 bits (800), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/240 (67%), Positives = 179/240 (74%), Gaps = 4/240 (1%)

Query: 1   MNDGDVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAXXXXXXXXXXXXXX 60
           MND D S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEA              
Sbjct: 1   MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  XXXXXXXXXXSMQLNASRIKVLQAQDDLVNTMKEAASKELLNVSHHRNILDALSHHHHVY 120
                     SMQLNASRIKVLQAQDD+VN MKE A+K+LL VS H       +HHHH Y
Sbjct: 61  QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQH----GFFNHHHHQY 116

Query: 121 KHLLKDLIIQSLLRLKEPSVLLRCREHDLHLVEHVLDSAAEEYAEKANVPQPEIIVDKHV 180
           KHLLKDLI+Q LLRLKEP+VLLRCRE DL +VE +LD A+EEY +KA V  PEIIVDK +
Sbjct: 117 KHLLKDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDI 176

Query: 181 YLPPAPSHHNTHDPYCSGGVVLASRDGKIVIENTLDARLDVLFRKKLPAIRKQLFGQVAA 240
           +LPPAPS  + H   C+GGVVLASRDGKIV ENTLDARL+V FR KLP IRK LFG+V A
Sbjct: 177 FLPPAPSDDDPHALSCAGGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSLFGKVGA 236


>AT4G11150.1 | Symbols: TUF, emb2448, TUFF, VHA-E1 | vacuolar ATP
           synthase subunit E1 | chr4:6800091-6801696 FORWARD
           LENGTH=230
          Length = 230

 Score =  308 bits (788), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 161/240 (67%), Positives = 174/240 (72%), Gaps = 10/240 (4%)

Query: 1   MNDGDVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAXXXXXXXXXXXXXX 60
           MNDGDVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA              
Sbjct: 1   MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query: 61  XXXXXXXXXXSMQLNASRIKVLQAQDDLVNTMKEAASKELLNVSHHRNILDALSHHHHVY 120
                     SMQLNASRIKVLQAQDD+VN MK+ A+K+LLNVS             + Y
Sbjct: 61  QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRD----------EYAY 110

Query: 121 KHLLKDLIIQSLLRLKEPSVLLRCREHDLHLVEHVLDSAAEEYAEKANVPQPEIIVDKHV 180
           K LLKDLI+Q LLRLKEPSVLLRCRE DL LVE VLD A EEYA KA V  PE+ VD  +
Sbjct: 111 KQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKI 170

Query: 181 YLPPAPSHHNTHDPYCSGGVVLASRDGKIVIENTLDARLDVLFRKKLPAIRKQLFGQVAA 240
           +LPP P  ++ H  +CSGGVVLASRDGKIV ENTLDARLDV FR KLP IRK LFGQV A
Sbjct: 171 FLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSLFGQVTA 230


>AT3G08560.1 | Symbols: VHA-E2 | vacuolar H+-ATPase subunit E
           isoform 2 | chr3:2600130-2601907 FORWARD LENGTH=235
          Length = 235

 Score =  266 bits (679), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 170/238 (71%), Gaps = 12/238 (5%)

Query: 1   MNDGDVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAXXXXXXXXXXXXXX 60
           MND DVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+              
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query: 61  XXXXXXXXXXSMQLNASRIKVLQAQDDLVNTMKEAASKELLNVSHHRNILDALSHHHHVY 120
                     S QLNASRIK LQAQDD+V  MK++A+K+LL VS+ +N           Y
Sbjct: 61  QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKN----------NY 110

Query: 121 KHLLKDLIIQSLLRLKEPSVLLRCREHDLHLVEHVLDSAAEEYAEKANVPQPEIIVDKHV 180
           K LLK LII+SLLRLKEPSVLLRCRE D  +VE V++ A  +YAEKA V  P+I +D+ V
Sbjct: 111 KKLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKV 170

Query: 181 Y--LPPAPSHHNTHDPYCSGGVVLASRDGKIVIENTLDARLDVLFRKKLPAIRKQLFG 236
           +   PP P   ++HDP+CSGGVVLAS+DGKIV ENTLDARLDV FR+KLP IR +L G
Sbjct: 171 FLPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRLVG 228