Miyakogusa Predicted Gene

Lj4g3v2990180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2990180.1 Non Chatacterized Hit- tr|D0N933|D0N933_PHYIT
Putative uncharacterized protein OS=Phytophthora infes,30.1,0.0004,
,CUFF.51962.1
         (202 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11270.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   258   2e-69

>AT4G11270.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
            protein | chr4:6854461-6859490 FORWARD LENGTH=1446
          Length = 1446

 Score =  258 bits (659), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/202 (63%), Positives = 168/202 (83%), Gaps = 1/202 (0%)

Query: 1    MTTLKEVVRVYPMVAVNESWTRLAVGDVIGEVSNASIRVYDMQSVTMIKVLDASGPPGLP 60
            M TL+EVVRV+PMV +N+S TRLA+GDVI E++NA I +YDM+S+T I+VLDASGPPGLP
Sbjct: 1246 MATLREVVRVFPMVILNDSSTRLAIGDVITEINNACIHIYDMRSMTKIRVLDASGPPGLP 1305

Query: 61   SLLTAATSGTVLATAISALSFSPDGEGLVAFSEHGLMIRWWSLGSIWWEKLSRNFVPVQC 120
            + L  A+   V  TAISALSFSPDGEGLVAFSE+GLMIRWWSLGS+WWEKLS++  P+QC
Sbjct: 1306 NFLRGASESAV-TTAISALSFSPDGEGLVAFSENGLMIRWWSLGSVWWEKLSQSLTPIQC 1364

Query: 121  TKLIFVPPWEGFSPNSSRSSIMANILETDKQLNFEDDSRDSNHGDSLKQLLHNLDLSYRL 180
            TKLIF+ PW+GFS +SSR+S++++I   +++L  ++ +++ +H + LKQL+ +LDLSYRL
Sbjct: 1365 TKLIFIHPWDGFSSSSSRTSVISSISNDEQELPLQETAKNISHVERLKQLVQHLDLSYRL 1424

Query: 181  EWVSDRKVFLTRHSHELGTFQL 202
            EW S+RKV LTRH+ ELGT  L
Sbjct: 1425 EWASERKVVLTRHNVELGTCLL 1446