Miyakogusa Predicted Gene

Lj4g3v2826840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2826840.1 tr|C1MN51|C1MN51_MICPC Predicted protein
(Fragment) OS=Micromonas pusilla (strain CCMP1545)
GN=MICPU,36.62,3e-16,seg,NULL; DUF3727,Protein of unknown function
DUF3727,CUFF.51868.1
         (304 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G33480.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   273   9e-74

>AT4G33480.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF3727 (InterPro:IPR022203); Has 348
           Blast hits to 348 proteins in 78 species: Archae - 0;
           Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183;
           Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
           | chr4:16105804-16108497 REVERSE LENGTH=336
          Length = 336

 Score =  273 bits (699), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 133/185 (71%), Positives = 165/185 (89%), Gaps = 1/185 (0%)

Query: 121 LPEPPAGFALGDNGKVLLTSTNRLVTVVDPTNKLPLECVVRRVFRSSERDECMLLCPVDT 180
           +P+PPAGF + + G+VL+ S  R+ TV+DPTN  PL+CV+RRVF SS+ ++CMLLCPVDT
Sbjct: 124 IPKPPAGFVINETGRVLMASKKRITTVIDPTNNSPLDCVIRRVFTSSKGEDCMLLCPVDT 183

Query: 181 PVQILKNT-LDGWSAISDEEVESILPAAAYALAKIHMHLVYSGYCYTARGGFCYTEEDIF 239
           PVQILK+T +DGWSA+SDEEVES+LPAAAYALAKIHMHLV+SG+CYTARGGFCYTE+++F
Sbjct: 184 PVQILKSTNIDGWSAVSDEEVESLLPAAAYALAKIHMHLVHSGFCYTARGGFCYTEDNVF 243

Query: 240 DFHTDDERGVDGLPTEGVEITHFNLEGARYMIYTPSDPLLFVALKDEDGILQIADDTLLE 299
           DF TDD + V+GLPTEGVEIT F+L+G+ YM+YTPSDPLLFVA KD++G+LQIADD LL+
Sbjct: 244 DFRTDDGQDVEGLPTEGVEITCFHLDGSHYMVYTPSDPLLFVAAKDQNGLLQIADDELLD 303

Query: 300 DPIVI 304
           DP VI
Sbjct: 304 DPAVI 308