Miyakogusa Predicted Gene

Lj4g3v2789350.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2789350.1 tr|D8RYR6|D8RYR6_SELML LHC-related protein
OS=Selaginella moellendorffii GN=SEP2_1 PE=4
SV=1,32.62,0.00000000000003,Chloroa_b-bind,Chlorophyll A-B binding
protein,CUFF.51671.1
         (196 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21970.1 | Symbols: SEP2 | stress enhanced protein 2 | chr2:9...   211   3e-55

>AT2G21970.1 | Symbols: SEP2 | stress enhanced protein 2 |
           chr2:9357188-9357874 REVERSE LENGTH=202
          Length = 202

 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/203 (56%), Positives = 140/203 (68%), Gaps = 8/203 (3%)

Query: 1   MASVSRVAHCNLRQAKPAAARPRNQPGPVQLSIPRAKPVESDQTGNSNIVLQPRLCTLRS 60
           MA  +R     L   +  A R  +     Q+ I + +P   D   N  IVLQPRLCTLRS
Sbjct: 1   MAMATRAIRYQLPSPRFRAPRCESSEPIKQIQI-QQRPRGGDLAENGKIVLQPRLCTLRS 59

Query: 61  YGPDRVINKNAINLA----DDV---SPFFATLSDHIESSKKSQDFEIISGRLAMMVFAAT 113
           YG D VI K           DV   SPFF TL+D+IESSKKSQDFE ISGRLAM+VFA T
Sbjct: 60  YGSDMVIAKKDGGDGGGGGSDVELASPFFETLTDYIESSKKSQDFETISGRLAMIVFAVT 119

Query: 114 VTVEIVTGSSVFRKMDVAGIAEAGGVCLAAVTLAAVFAWFSSARNRVGSIFNLSYNAFID 173
           VT EIVTG+S+F+K+DV G++EA G  LAA+  AA+FAW + +RNRVG IF +S N+FID
Sbjct: 120 VTEEIVTGNSLFKKLDVEGLSEAIGAGLAAMGCAAMFAWLTISRNRVGRIFTVSCNSFID 179

Query: 174 SLIDQIVDGLFYESEPSDWSDEL 196
           SL+DQIVDGLFY+++PSDWSD+L
Sbjct: 180 SLVDQIVDGLFYDTKPSDWSDDL 202