Miyakogusa Predicted Gene

Lj4g3v2785700.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2785700.1 Non Chatacterized Hit- tr|I3T1G1|I3T1G1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,seg,NULL;
LSM,Ribonucleoprotein LSM domain; SMALL NUCLEAR RIBONUCLEOPROTEIN
SM,NULL; no description,,CUFF.51630.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20580.1 | Symbols:  | Small nuclear ribonucleoprotein family...   199   4e-52
AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 | chr1:286...   189   3e-49
AT5G27720.1 | Symbols: emb1644 | Small nuclear ribonucleoprotein...    58   2e-09
AT4G02840.1 | Symbols:  | Small nuclear ribonucleoprotein family...    53   6e-08
AT3G07590.2 | Symbols:  | Small nuclear ribonucleoprotein family...    50   5e-07
AT3G07590.1 | Symbols:  | Small nuclear ribonucleoprotein family...    50   5e-07

>AT1G20580.1 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr1:7128979-7130371 FORWARD LENGTH=131
          Length = 131

 Score =  199 bits (506), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 100/103 (97%)

Query: 1   MSRSLGIPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQL 60
           MSRSLGIPVKLLHE+SGHIV+VELKSGELYRGSMIECEDNWNCQLE ITYTAKDGK SQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGASLGVGR 103
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDAR+KGK +SLGVGR
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGR 103


>AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 |
           chr1:28625957-28627080 FORWARD LENGTH=128
          Length = 128

 Score =  189 bits (481), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 96/103 (93%), Gaps = 2/103 (1%)

Query: 1   MSRSLGIPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQL 60
           MSRSLGIPVKLLHESSGHIVSVE+KSGELYRGSMIECEDNWNCQLE+ITYTAKDGK SQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGASLGVGR 103
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGR
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGR 101


>AT5G27720.1 | Symbols: emb1644 | Small nuclear ribonucleoprotein
          family protein | chr5:9815904-9817304 FORWARD
          LENGTH=129
          Length = 129

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 7  IPVKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65
          +P+ LL  + GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 66 RGSKVRFMVIPD 77
          RG+ ++++ +PD
Sbjct: 62 RGNTIKYLRVPD 73


>AT4G02840.1 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr4:1264726-1266253 FORWARD LENGTH=116
          Length = 116

 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 49/92 (53%)

Query: 9   VKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
           V+ L + +   VS+ELK+G +  G++   + + N  L+++  T K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARVKGKGASLG 100
            +R+ ++PD L    +      R+K K  + G
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 95


>AT3G07590.2 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr3:2423146-2423958 FORWARD LENGTH=114
          Length = 114

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 48/92 (52%)

Query: 9   VKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
           V+ L + +   VS+ELK+G +  G++   + + N  L+++  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARVKGKGASLG 100
            +R+ ++PD L    +      RVK K    G
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95


>AT3G07590.1 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr3:2423146-2423958 FORWARD LENGTH=114
          Length = 114

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 48/92 (52%)

Query: 9   VKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
           V+ L + +   VS+ELK+G +  G++   + + N  L+++  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARVKGKGASLG 100
            +R+ ++PD L    +      RVK K    G
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95