Miyakogusa Predicted Gene

Lj4g3v2603730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2603730.1 tr|G7LHV2|G7LHV2_MEDTR Actin-related protein 2/3
complex subunit OS=Medicago truncatula GN=MTR_8g085,97.65,0,Arp2/3
complex subunits,NULL; ARPC4,ARP23 complex 20kDa subunit; no
description,NULL; ARP2/3 COMPLEX,CUFF.51209.1
         (170 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14147.1 | Symbols: ARPC4 | protein binding | chr4:8154079-81...   323   3e-89
AT4G14147.2 | Symbols: ARPC4 | protein binding | chr4:8154062-81...   278   1e-75

>AT4G14147.1 | Symbols: ARPC4 | protein binding |
           chr4:8154079-8156246 REVERSE LENGTH=169
          Length = 169

 Score =  323 bits (829), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 157/168 (93%), Positives = 165/168 (98%)

Query: 3   SNTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 62
           +N+LRLYL CI+NTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC
Sbjct: 2   ANSLRLYLACIKNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 63  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 122
           LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 123 HCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 170
           HCE+MQKQKLIDFI+QFMEDI+KEI +LK SVNTRGRLVATEFLKQF+
Sbjct: 122 HCEEMQKQKLIDFIIQFMEDIEKEIRDLKESVNTRGRLVATEFLKQFM 169


>AT4G14147.2 | Symbols: ARPC4 | protein binding |
           chr4:8154062-8156246 REVERSE LENGTH=176
          Length = 176

 Score =  278 bits (711), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/175 (80%), Positives = 152/175 (86%), Gaps = 8/175 (4%)

Query: 3   SNTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 62
           +N+LRLYL CI+NTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC
Sbjct: 2   ANSLRLYLACIKNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKC 61

Query: 63  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 122
           LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY
Sbjct: 62  LIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNY 121

Query: 123 HCEDMQKQKLIDFIVQFMEDIDKE-------ISELKMSVNTRGRLVATEFLKQFI 170
           HCE+MQKQKLIDFI+QFME   +E       +SE K      G ++ T  +KQ +
Sbjct: 122 HCEEMQKQKLIDFIIQFMEARYRERNKGLEGVSEYKRKTRCYG-VLETVHVKQLL 175