Miyakogusa Predicted Gene
- Lj4g3v2489550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2489550.1 tr|G7KG11|G7KG11_MEDTR DEAD-box ATP-dependent RNA
helicase OS=Medicago truncatula GN=MTR_5g077690 PE,82.49,0,DEAD-like
helicases superfamily,Helicase, superfamily 1/2, ATP-binding domain;
helicase superfamily ,CUFF.51059.1
(512 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:900142... 670 0.0
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 171 8e-43
AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 159 6e-39
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 151 1e-36
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 151 1e-36
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA ... 149 7e-36
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA... 147 1e-35
AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosph... 136 3e-32
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c... 135 5e-32
AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | ch... 134 2e-31
AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | c... 132 5e-31
AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosph... 131 1e-30
AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 129 6e-30
AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosph... 127 1e-29
AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosph... 126 4e-29
AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosph... 124 2e-28
AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |... 122 7e-28
AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |... 122 8e-28
AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 120 3e-27
AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 120 3e-27
AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosph... 119 6e-27
AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 119 7e-27
AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:27... 119 7e-27
AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides,... 118 1e-26
AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |... 117 3e-26
AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 114 2e-25
AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 111 1e-24
AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosph... 111 1e-24
AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosph... 110 3e-24
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosph... 109 4e-24
AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosph... 109 4e-24
AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosph... 109 5e-24
AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 108 6e-24
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosph... 108 7e-24
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family ... 108 7e-24
AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiatio... 105 6e-23
AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 105 7e-23
AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 105 7e-23
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 105 9e-23
AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family prote... 105 9e-23
AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family prote... 105 9e-23
AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 105 9e-23
AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWAR... 104 1e-22
AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 103 2e-22
AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translat... 103 3e-22
AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosph... 103 3e-22
AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosph... 103 3e-22
AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosph... 102 6e-22
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor ... 100 2e-21
AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 100 4e-21
AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 98 1e-20
AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-2026201... 98 1e-20
AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosph... 97 2e-20
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 97 2e-20
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase... 93 4e-19
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleos... 92 9e-19
AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 91 2e-18
AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 91 2e-18
AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 91 2e-18
AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | ... 91 2e-18
AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 91 2e-18
AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 91 2e-18
AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside triph... 88 1e-17
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosph... 88 1e-17
AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 87 3e-17
AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 86 5e-17
AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family prot... 86 7e-17
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosph... 85 2e-16
AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosph... 84 2e-16
AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 84 3e-16
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosph... 82 7e-16
AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 82 1e-15
AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family prot... 73 6e-13
AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosph... 72 7e-13
AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 69 7e-12
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosph... 61 2e-09
AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosph... 61 2e-09
AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family prote... 57 2e-08
AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-... 54 3e-07
>AT4G15850.1 | Symbols: ATRH1, RH1 | RNA helicase 1 |
chr4:9001426-9004534 FORWARD LENGTH=522
Length = 522
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/512 (64%), Positives = 397/512 (77%), Gaps = 5/512 (0%)
Query: 3 EEKQRSIPVLPWMRDPIDVTLCQQLPLDSIPLLHPKLKSALESMGISSLFPVQLAVWQET 62
E+K V+PWMR P+DV+ + LD++P L+PKLK ALE+MGISSLFPVQ+AVW ET
Sbjct: 6 EDKTEMDSVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHET 65
Query: 63 VGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFD 122
+GPG F+RD+CVNSPTGSGKTL+YALPIVQ+L++R +CLRALVV+PTRDLA QVK VFD
Sbjct: 66 IGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFD 125
Query: 123 GVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPG 182
+A +GL VG AVGQSS+A EIS+L+ P +AG CYDP L ES VDILVATPG
Sbjct: 126 AIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDD-LSQNLESAVDILVATPG 184
Query: 183 RLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFP 242
RLMDHIN TKGFTLEHL YLVVDETDRLLREAYQSWLPTVL+L Q++DDS F P
Sbjct: 185 RLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVP 244
Query: 243 CSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRY 302
+ G+L+T RR VERGFK KPYPRL KMVLSAT+TQDP KL+QL+LH PLF+ G RY
Sbjct: 245 SAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRY 304
Query: 303 RLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQID 362
RLPE LE +LICET +KP+YLVALLKS GEKCI+FT SVE+T RLCKLLN F D +I
Sbjct: 305 RLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIK 364
Query: 363 MKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVH 422
KEYSG +Q +RSK L AFRKG+ QVLV+SDA+TRGMDV+GV NVINYDMP + KT++H
Sbjct: 365 AKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIH 424
Query: 423 RAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSLIDALHTTYQSALE 482
RAGRTARAGQ GRCFTL+S EVRRF KL++K + SC + +P + +D++ TY ALE
Sbjct: 425 RAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTPALE 484
Query: 483 KFKEIL-SERRKKPKE---HSSQPTKENGKKN 510
K KE++ SE KK ++ H+S+ K N
Sbjct: 485 KLKELVESEAPKKGRQAFRHNSRTGNSQTKLN 516
>AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9362176-9366449 REVERSE LENGTH=789
Length = 789
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 213/462 (46%), Gaps = 84/462 (18%)
Query: 31 SIPLLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPI 90
S PLL A E++G P+Q A + RDLC ++ TGSGKT A+ALP
Sbjct: 175 SRPLLR-----ACETLGYKKPTPIQAAC----IPLALTGRDLCASAITGSGKTAAFALPT 225
Query: 91 VQMLSTRVAKCL--RALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISEL 148
++ L R + R L++ PTR+LA Q+ + +A ++ GL VG SV ++ L
Sbjct: 226 LERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVL 285
Query: 149 VHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETD 208
+P DI+VATPGR++DH+ + L+ L L++DE D
Sbjct: 286 RSMP----------------------DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEAD 323
Query: 209 RLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRL 268
RLL+ + + + ++ L C R
Sbjct: 324 RLLQTGFATEITELVRL-----------------CP---------------------KRR 345
Query: 269 AKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKV--KPLYLVA 326
M+ SAT+T++ +LV+L+L+ PL L A R P E I T+ + L++
Sbjct: 346 QTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLS 405
Query: 327 LLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGE 386
L K I+F+ + ++ HRL K+L L+ E G Q R +L FRK E
Sbjct: 406 LCTRTFKSKVIIFSGTKQAAHRL-KILFGLAGLK--AAELHGNLTQAQRLDSLELFRKQE 462
Query: 387 FQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVR 446
L+++D RG+D+ GV+ VINY P+ I +YVHR GRTARAG+ G T ++ D R
Sbjct: 463 VDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVT-DSDR 521
Query: 447 RFKKLMQKAEAGSCEEHILP-------SSLIDALHTTYQSAL 481
K++ K + ++P S +ID + Y + +
Sbjct: 522 SLLKVIAKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVI 563
>AT5G60990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:24546601-24549148 REVERSE LENGTH=456
Length = 456
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 133/463 (28%), Positives = 211/463 (45%), Gaps = 86/463 (18%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQML-----------STRVAKCLRALVVVPTRDLAFQVK 118
+D+ + TGSGKT A+A+PI+Q L R A V+ PTR+LA Q+
Sbjct: 47 KDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIA 106
Query: 119 RVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILV 178
F+ + + + LR + VG D + + + + R P ++V
Sbjct: 107 EQFEALGADISLRCAVLVGG---IDRMQQTIALGKR-------PH------------VIV 144
Query: 179 ATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPAD 238
ATPGRL DH++ TKGF+L+ L YLV+DE DRLL E ++ L +LE
Sbjct: 145 ATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE-------------- 190
Query: 239 SFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAG 298
+ P R + SAT+T+ KL + L P+ + A
Sbjct: 191 -----------------------EIPLER-KTFLFSATMTKKVRKLQRACLRNPVKIEAA 226
Query: 299 QMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFED 358
+Y + L+ K K YLV +L + ++FT++ + T L +L
Sbjct: 227 S-KYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGF 285
Query: 359 LQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIK 418
I + SG Q R L F+ GE +LV +D +RG+D+ V VINYD+P K
Sbjct: 286 RAIPI---SGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSK 342
Query: 419 TYVHRAGRTARAGQTGRCFTLMSKDEVRRF---KKLMQKA--EAGSCEEHILPSSLIDAL 473
Y+HR GRTARAG++G +L+++ E+ + +KL+ K E + E+ +L SL++ +
Sbjct: 343 DYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAEEDEVL--SLLERV 400
Query: 474 HTTYQSALEKFKEILSERRKKPKEHSSQ----PTKENGKKNHS 512
+ + KE +R+ + S+ K+ G K
Sbjct: 401 AEAKKLSAMNMKESGGRKRRGEDDEESERFLGGNKDRGNKERG 443
>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=748
Length = 748
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/453 (28%), Positives = 208/453 (45%), Gaps = 90/453 (19%)
Query: 38 KLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLST- 96
+L+ +LE GI+ LFP+Q AV + P RD+ + TG+GKTLA+ +PI++ L+
Sbjct: 112 RLEESLEKRGITHLFPIQRAV----LVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 97 --------RVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISEL 148
R + + LV+ PTR+LA QV++ E +
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK---------------------ESAPY 206
Query: 149 VHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETD 208
+ G Y Q + R VD++V TPGR++D I + L + YLV+DE D
Sbjct: 207 LSTVCVYGGVSYTIQQSALTR---GVDVVVGTPGRIIDLIEG-RSLKLGEVEYLVLDEAD 262
Query: 209 RLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRL 268
++L ++ + ++LE L T+R+
Sbjct: 263 QMLAVGFEEAVESILE----------------------NLPTKRQS-------------- 286
Query: 269 AKMVLSATITQDPGKLVQLNLHLPLFLR-AGQMRYRLPENLESYKLICETKVKPLYLVAL 327
M+ SAT+ KL + L PL + G +L E ++ Y + + K L L
Sbjct: 287 --MLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344
Query: 328 LKSLG-GEKCIVFTKSVESTHRLCKLLN---CFEDLQIDMKEYSGLQHQCVRSKTLTAFR 383
+ G K IVFT++ + L+ E L D+ QHQ R +TL AFR
Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDIS-----QHQ--RERTLNAFR 397
Query: 384 KGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKD 443
+G+F VLV++D +RG+D+ V VI+Y++P +T+VHR+GRT RAG+ G + +
Sbjct: 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
Query: 444 EVRRFKKLMQKAEAGSCEEHILPSSLIDALHTT 476
+ R + L + + G E I P ++ D L ++
Sbjct: 458 QKRTVRSLER--DVGCHFEFISPPTVGDLLESS 488
>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288871 REVERSE LENGTH=747
Length = 747
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/453 (28%), Positives = 208/453 (45%), Gaps = 90/453 (19%)
Query: 38 KLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLST- 96
+L+ +LE GI+ LFP+Q AV + P RD+ + TG+GKTLA+ +PI++ L+
Sbjct: 112 RLEESLEKRGITHLFPIQRAV----LVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 97 --------RVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISEL 148
R + + LV+ PTR+LA QV++ E +
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK---------------------ESAPY 206
Query: 149 VHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETD 208
+ G Y Q + R VD++V TPGR++D I + L + YLV+DE D
Sbjct: 207 LSTVCVYGGVSYTIQQSALTR---GVDVVVGTPGRIIDLIEG-RSLKLGEVEYLVLDEAD 262
Query: 209 RLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRL 268
++L ++ + ++LE L T+R+
Sbjct: 263 QMLAVGFEEAVESILE----------------------NLPTKRQS-------------- 286
Query: 269 AKMVLSATITQDPGKLVQLNLHLPLFLR-AGQMRYRLPENLESYKLICETKVKPLYLVAL 327
M+ SAT+ KL + L PL + G +L E ++ Y + + K L L
Sbjct: 287 --MLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344
Query: 328 LKSLG-GEKCIVFTKSVESTHRLCKLLN---CFEDLQIDMKEYSGLQHQCVRSKTLTAFR 383
+ G K IVFT++ + L+ E L D+ QHQ R +TL AFR
Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDIS-----QHQ--RERTLNAFR 397
Query: 384 KGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKD 443
+G+F VLV++D +RG+D+ V VI+Y++P +T+VHR+GRT RAG+ G + +
Sbjct: 398 QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSS 457
Query: 444 EVRRFKKLMQKAEAGSCEEHILPSSLIDALHTT 476
+ R + L + + G E I P ++ D L ++
Sbjct: 458 QKRTVRSLER--DVGCHFEFISPPTVGDLLESS 488
>AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887382-7889806 FORWARD LENGTH=610
Length = 610
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 197/439 (44%), Gaps = 94/439 (21%)
Query: 35 LHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQML 94
+ P++ AL+ GI LFP+Q AV + P RD+ + TG+GKTLA+ +PI+ +
Sbjct: 123 ISPEIVKALKGRGIEKLFPIQKAVLE----PAMEGRDMIGRARTGTGKTLAFGIPIIDKI 178
Query: 95 STRVAKCLRA-----LVVVPTRDLAFQVKRVFDGVASPLG---LRVGLAVGQSSVADEIS 146
AK R LV+ PTR+LA QV++ F A L L G +GQ ++
Sbjct: 179 IKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQ-----QMR 233
Query: 147 ELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDE 206
EL + +D+ V TPGR++D + L + ++V+DE
Sbjct: 234 ELNY----------------------GIDVAVGTPGRIID-LMKRGALNLSEVQFVVLDE 270
Query: 207 TDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYP 266
D++L+ + + +L+ L +R+
Sbjct: 271 ADQMLQVGFAEDVEIILQ----------------------KLPAKRQS------------ 296
Query: 267 RLAKMVLSATITQDPGKLVQLNLHLPLFLR-AGQMRYRLPENLESYKLICETKVKPLYLV 325
M+ SAT+ L + L+ PL + G +L + + Y + ++ + +
Sbjct: 297 ----MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIG 352
Query: 326 ALLKSLG-GEKCIVFTKSVESTHRLC----KLLNCFEDLQIDMKEYSGLQHQCVRSKTLT 380
L+K G G KCIVFT++ RL K C E L D+ Q R +TL
Sbjct: 353 PLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKC-EALHGDIS-------QAQRERTLA 404
Query: 381 AFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLM 440
FR G F +LV++D RG+DV V VI+Y++P +T+VHR GRT RAG+ G +
Sbjct: 405 GFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIH 464
Query: 441 SKDEVRRFKKLMQKAEAGS 459
+D+ R K M + E GS
Sbjct: 465 GQDQTRAVK--MIEKEVGS 481
>AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RNA
helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616
Length = 616
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 191/428 (44%), Gaps = 90/428 (21%)
Query: 35 LHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQML 94
+ P++ AL S GI LFP+Q AV + P RD+ + TG+GKTLA+ +PI+ +
Sbjct: 111 ISPEIVKALSSKGIEKLFPIQKAVLE----PAMEGRDMIGRARTGTGKTLAFGIPIIDKI 166
Query: 95 STRVAKCLRA-----LVVVPTRDLAFQVKRVFDGVASPLG---LRVGLAVGQSSVADEIS 146
AK R LV+ PTR+LA QV++ F A L L G +GQ
Sbjct: 167 IKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQ------- 219
Query: 147 ELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDE 206
+ + VD+ V TPGR++D + L + ++V+DE
Sbjct: 220 --------------------MRQLDYGVDVAVGTPGRVIDLMKR-GALNLSEVQFVVLDE 258
Query: 207 TDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYP 266
D++L+ + + +LE L +R+
Sbjct: 259 ADQMLQVGFAEDVEIILE----------------------KLPEKRQS------------ 284
Query: 267 RLAKMVLSATITQDPGKLVQLNLHLPLFLR-AGQMRYRLPENLESYKLICETKVKPLYLV 325
M+ SAT+ L + L+ PL + G +L + + +Y +I ++ + +
Sbjct: 285 ----MMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIG 340
Query: 326 ALL-KSLGGEKCIVFTKSVESTHRLC-KLLNCF--EDLQIDMKEYSGLQHQCVRSKTLTA 381
L+ + G KCIVFT++ RL L F E L D+ Q R +TL
Sbjct: 341 PLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDIS-------QSQRERTLAG 393
Query: 382 FRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
FR G F +LV++D RG+DV V +I+Y++P +T+VHR GRT RAG+ G + S
Sbjct: 394 FRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYS 453
Query: 442 KDEVRRFK 449
+D+ R K
Sbjct: 454 QDQSRAVK 461
>AT3G16840.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:5738020-5743042
REVERSE LENGTH=826
Length = 826
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 133/509 (26%), Positives = 220/509 (43%), Gaps = 84/509 (16%)
Query: 35 LHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQML 94
LHP L ++ + +Q A + G +D+ + TGSGKTLA+ LPI+Q L
Sbjct: 197 LHPLLMKSIYRLDFKEPTKIQKACFNVAAYQG---KDVIGAAETGSGKTLAFGLPILQRL 253
Query: 95 ---STRVAKC----------------LRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLA 135
+V K LRAL++ PTR+LA QV + A L ++V
Sbjct: 254 LDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPI 313
Query: 136 VGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFT 195
VG G + Q R + K +I+VATPGRL + ++ +
Sbjct: 314 VG-------------------GMFSEKQER---RLKEKPEIVVATPGRLWELMSAGEKHL 351
Query: 196 LE--HLHYLVVDETDRLLREAYQSWLPTVLEL--------------AQSNDDSFSQPA-- 237
+E L + V+DE DR++ + L ++L+L +SND + P
Sbjct: 352 VELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPNEGKTQTVKSNDTVLNVPKKK 411
Query: 238 -DSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLR 296
+F + AL + R ++RG ++ +++ G ++ N+ +
Sbjct: 412 RQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEVNSIEVLSERAG--MRDNVAIIDLTT 469
Query: 297 AGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCF 356
+ ++ E+ + CE K K YL +L G + IVF SV + LL
Sbjct: 470 TSILAPKIEESF----IKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTDLRHISGLLKI- 524
Query: 357 EDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKY 416
L +D+ Q R K++ FR E +L+++D + RG+D++ VR +I+Y +P
Sbjct: 525 --LGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHS 582
Query: 417 IKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSLIDALHTT 476
+ YVHR GRTARA G L+ +E +F L C+ + S I L +
Sbjct: 583 AEVYVHRCGRTARAFADGCSIALIEPNETSKFYTL--------CKSFSMESVKIFPLDNS 634
Query: 477 YQSALEK----FKEILSERRKKPKEHSSQ 501
Y A+ K ++I RK +E++ +
Sbjct: 635 YMPAVRKRLYLARQIYEIERKGSRENADR 663
>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
chr5:9285540-9288618 REVERSE LENGTH=655
Length = 655
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 190/421 (45%), Gaps = 86/421 (20%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLST---------RVAKCLRALVVVPTRDLAFQVKRV 120
RD+ + TG+GKTLA+ +PI++ L+ R + + LV+ PTR+LA QV++
Sbjct: 47 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 106
Query: 121 FDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVAT 180
E + + G Y Q + R VD++V T
Sbjct: 107 IK---------------------ESAPYLSTVCVYGGVSYTIQQSALTR---GVDVVVGT 142
Query: 181 PGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSF 240
PGR++D I + L + YLV+DE D++L ++ + ++LE
Sbjct: 143 PGRIIDLIEG-RSLKLGEVEYLVLDEADQMLAVGFEEAVESILE---------------- 185
Query: 241 FPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLR-AGQ 299
L T+R+ M+ SAT+ KL + L PL + G
Sbjct: 186 ------NLPTKRQS----------------MLFSATMPTWVKKLARKYLDNPLNIDLVGD 223
Query: 300 MRYRLPENLESYKLICETKVKPLYLVALLKSLG-GEKCIVFTKSVESTHRLCKLLN---C 355
+L E ++ Y + + K L L+ G K IVFT++ + L+
Sbjct: 224 QDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIA 283
Query: 356 FEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPK 415
E L D+ QHQ R +TL AFR+G+F VLV++D +RG+D+ V VI+Y++P
Sbjct: 284 TEALHGDIS-----QHQ--RERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPN 336
Query: 416 YIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSLIDALHT 475
+T+VHR+GRT RAG+ G + + + R + L + + G E I P ++ D L +
Sbjct: 337 DPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSL--ERDVGCHFEFISPPTVGDLLES 394
Query: 476 T 476
+
Sbjct: 395 S 395
>AT1G16280.1 | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 |
chr1:5568482-5570487 REVERSE LENGTH=491
Length = 491
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/439 (26%), Positives = 195/439 (44%), Gaps = 82/439 (18%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLG 129
RD+ + TGSGKT A+ALPI+ L+ ALVV PTR+LAFQ+ F + S L
Sbjct: 96 RDVLGLAQTGSGKTAAFALPILHRLAEDPYGVF-ALVVTPTRELAFQLAEQFKALGSCLN 154
Query: 130 LRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHIN 189
LR + VG + + LV P I++ TPGR+ +
Sbjct: 155 LRCSVIVGGMDMLTQTMSLVSRP----------------------HIVITTPGRIKVLLE 192
Query: 190 TTKGF--TLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGA 247
+LV+DE DR+L +Q L T+ F C +
Sbjct: 193 NNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTI------------------FQCLPKS 234
Query: 248 LRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPEN 307
+T ++ SAT+T + L++ + + F A + + +
Sbjct: 235 RQT--------------------LLFSATMTSNLQALLEHSSNKAYFYEAYE-GLKTVDT 273
Query: 308 LESYKLICETKVKPLYLVALLKSL---GGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMK 364
L + + K LYLV +L + G ++F + + RL +L ++L+++
Sbjct: 274 LTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLML---DELEVENI 330
Query: 365 EYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRA 424
L Q +R L+ F+ G+ +L+++D +RG+D+ V VINYD+P+ + YVHR
Sbjct: 331 AMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRV 390
Query: 425 GRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSLIDALHTTYQSALEK- 483
GRTARAG+ G +++++ +V+ K+ + E G E + D+L T S ++
Sbjct: 391 GRTARAGRGGLAVSIITETDVKLIHKI--EEEVGKKMEPYNKKVITDSLEVTKVSKAKRV 448
Query: 484 ---------FKEILSERRK 493
F++ + +RRK
Sbjct: 449 AMMKMLDNGFEDKVKDRRK 467
>AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) |
chr5:24980542-24983879 REVERSE LENGTH=671
Length = 671
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 125/460 (27%), Positives = 191/460 (41%), Gaps = 83/460 (18%)
Query: 39 LKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRV 98
L+ L++ GI +LFP+Q + + + DL + TG GKTLA+ LPI++ L
Sbjct: 107 LREKLKANGIEALFPIQASTFDMVLDGA----DLVGRARTGQGKTLAFVLPILESLVNGP 162
Query: 99 AKCLR---------ALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELV 149
AK R LV++PTR+LA QV FD LGL G
Sbjct: 163 AKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYG------------ 210
Query: 150 HVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDR 209
G Y Q + + VDI+V TPGR+ DHI + +L + V+DE D
Sbjct: 211 -------GDSYPVQEG---KLKRGVDIVVGTPGRIKDHIE-RQNLDFSYLQFRVLDEADE 259
Query: 210 LLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLA 269
+LR + + +L + + + + P V + R ++R K
Sbjct: 260 MLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRF---LKRDQKTIDLVGND 316
Query: 270 KMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLK 329
KM S ++ H+ + M +P+ + Y
Sbjct: 317 KMKASNSVR-----------HIAIPCNKAAMARLIPDIISCY------------------ 347
Query: 330 SLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQV 389
S GG+ I+F ++ L LL+ L G Q R TL FR G+F
Sbjct: 348 SSGGQ-TIIFAETKVQVSELSGLLDGSRALH-------GEIPQSQREVTLAGFRNGKFAT 399
Query: 390 LVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS--KDEVRR 447
LV+++ RG+D+ V+ +I + P+ ++ Y+HR+GRT RAG TG TL K V R
Sbjct: 400 LVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRKSSVSR 459
Query: 448 FKKLMQKAEAGSCEEHILPSSLIDALHTTYQSALEKFKEI 487
+K EAG EH+ + + A EK K++
Sbjct: 460 IEK-----EAGIKFEHLAAPQPDEIARSGGMEAAEKVKQV 494
>AT3G18600.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:6399724-6403007
REVERSE LENGTH=568
Length = 568
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 117/449 (26%), Positives = 200/449 (44%), Gaps = 82/449 (18%)
Query: 42 ALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQML-----ST 96
A++ MG + +Q Q P +D+ + TGSGKTLA+ +P V++L S
Sbjct: 103 AIKEMGFQYMTQIQAGSIQ----PLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSP 158
Query: 97 RVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREA 156
R + +V+ PTR+LA Q K V + + V + +G ++ E
Sbjct: 159 RNGTGV--IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQ---------- 206
Query: 157 GSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQ 216
R S ++++ATPGRL+DH+ TK F +HL LV+DE DR+L E ++
Sbjct: 207 ------------RIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFE 254
Query: 217 SWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSAT 276
+ +L++ P +TR+ + SAT
Sbjct: 255 EDMNKILKI---------------LP------KTRQTA-----------------LFSAT 276
Query: 277 ITQDPGKLVQLNLHLPLFLRAGQMRYRLP-ENLESYKLICETKVKPLYLVALLKSLGGEK 335
T L +++L P+ + R ++ E LE + +K + + L++ LK +K
Sbjct: 277 QTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNLNKK 336
Query: 336 CIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDA 395
+VF + +S +++ + +D+ + G Q R+KT F K + +L+ +D
Sbjct: 337 IMVFFSTCKSVQFHTEIMKISD---VDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDV 393
Query: 396 MTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARA-GQTGRCFTLMSKDEVRRFKKLMQK 454
RG+D+ V +I YD P Y+HR GRTAR G G+ ++ +E+ +F + ++
Sbjct: 394 AARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEEL-QFIRYLKA 452
Query: 455 AEAGSCEEHILPSSLIDALHTTYQSALEK 483
A+ E L + QSALEK
Sbjct: 453 AKVPVKELEFNEKRL-----SNVQSALEK 476
>AT5G65900.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:26358328-26361244 FORWARD LENGTH=633
Length = 633
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 126/466 (27%), Positives = 203/466 (43%), Gaps = 88/466 (18%)
Query: 42 ALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRVAKC 101
+++ MG + + +Q + + P D+ + TGSGKTLA+ +P V++L RV
Sbjct: 168 SIKEMGFARMTQIQ----AKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLY-RVKFT 222
Query: 102 LR----ALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAG 157
R LV+ PTR+LA Q V + VG +G E L
Sbjct: 223 PRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILA-------- 274
Query: 158 SCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQS 217
V++LVATPGRL+DH+ T GF ++L +LV+DE DR+L + ++
Sbjct: 275 --------------KGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEE 320
Query: 218 WLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATI 277
L +L L P +TR+ + SAT
Sbjct: 321 DLKKILNL---------------LP------KTRQTS-----------------LFSATQ 342
Query: 278 TQDPGKLVQLNLHLPLFLRAGQMRYRLP-ENLESYKLICETKVKPLYLVALLKSLGGEKC 336
+ L +++L P+++ + R + E LE + + ++ L+L+ LK G+K
Sbjct: 343 SAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKKK 402
Query: 337 I-VFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDA 395
I VF + +ST +L F ++ D E G Q R+ T F K E +L+ ++
Sbjct: 403 IMVFFSTCKSTKFHAEL---FRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNV 459
Query: 396 MTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARA-GQTGRCFTLMSKDEVRRFKKLMQK 454
RG+D V ++ YD P Y+HR GRTAR G G+ +++ E++ + L K
Sbjct: 460 AARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQYL--K 517
Query: 455 AEAGSCEEH---------ILP--SSLIDALHTTYQSALEKFKEILS 489
A EEH + P +LI + +SA E +K +S
Sbjct: 518 AAKIPVEEHEFEEKKLLDVKPFVENLISENYALKESAKEAYKTYIS 563
>AT2G33730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:14265679-14267880
REVERSE LENGTH=733
Length = 733
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/426 (26%), Positives = 191/426 (44%), Gaps = 59/426 (13%)
Query: 35 LHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQML 94
L +L A+E G P+Q+A + G RD+ + TGSGKT A+ LP++ +
Sbjct: 320 LTSELLKAVERAGYKKPSPIQMAA----IPLGLQQRDVIGIAETGSGKTAAFVLPMLAYI 375
Query: 95 S-------TRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISE 147
S + A+V+ PTR+LA Q++ A LG RV VG S+ ++ +
Sbjct: 376 SRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLK 435
Query: 148 LVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDET 207
+ C +I++ATPGRL+D + + L +Y+V+DE
Sbjct: 436 ITQ-------GC---------------EIVIATPGRLIDCLER-RYAVLNQCNYVVLDEA 472
Query: 208 DRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPR 267
DR++ ++ + VL+ + P+ + P + ++
Sbjct: 473 DRMIDMGFEPQVAGVLD---------AMPSSNLKPENEEEELDEKKI------------Y 511
Query: 268 LAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVAL 327
+ SAT+ +L + L P+ + G + + + + ++ + K L L
Sbjct: 512 RTTYMFSATMPPGVERLARKYLRNPVVVTIGTA-GKTTDLISQHVIMMKESEKFFRLQKL 570
Query: 328 LKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEF 387
L LG + IVF + ++ + K L+ + G + Q R +L FR +
Sbjct: 571 LDELGEKTAIVFVNTKKNCDSIAKNLD---KAGYRVTTLHGGKSQEQREISLEGFRAKRY 627
Query: 388 QVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRR 447
VLV++D + RG+D+ V +VINYDMPK+I+ Y HR GRT RAG++G + ++ +
Sbjct: 628 NVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEV 687
Query: 448 FKKLMQ 453
F L Q
Sbjct: 688 FYDLKQ 693
>AT1G28180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9843084-9845002
REVERSE LENGTH=614
Length = 614
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/422 (27%), Positives = 184/422 (43%), Gaps = 61/422 (14%)
Query: 44 ESMGIS---SLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLS----- 95
E IS S P + W+ET+ G RD+ S TGSGKT A+ LP++ +S
Sbjct: 211 EDFNISYRGSKIPHPMRNWEETIPLGLEQRDVIGISATGSGKTAAFVLPMLAYISRLPPM 270
Query: 96 --TRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPA 153
+ ALV+VPTR+LA Q++ + LG + G S+ + +L
Sbjct: 271 REENQTEGPYALVMVPTRELAHQIEEETVKFSRYLGFKAVSITGWESIEKQALKL----- 325
Query: 154 REAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLRE 213
+ C +I++ATPGRL+D + + L +YLV+DE DR++
Sbjct: 326 --SQGC---------------EIVIATPGRLLDCLER-RYVVLNQCNYLVLDEADRMIDM 367
Query: 214 AYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVL 273
++ + VL++ PCS E+ Y A M+L
Sbjct: 368 DFEPQVSEVLDV---------------MPCSNLKPEKEDEELEEKKIYRTTYMFSATMLL 412
Query: 274 SATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGG 333
S +L + L P+ + G+ + + + ++ + K L L+ LG
Sbjct: 413 SVE------RLARKFLRNPVVVTIGETTKFITQQV----IMTKESDKFSRLKKLIDDLGD 462
Query: 334 EK-CIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVS 392
+K IVF + + K L ++ Q Q R +L F+K F VLV+
Sbjct: 463 DKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQEQ--RDYSLEEFKKKRFNVLVT 520
Query: 393 SDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLM 452
+D + RG+D+ + VINYDMP + Y HR GRT RAG+TG T ++ ++ F L
Sbjct: 521 TDVLGRGLDILDLAQVINYDMPNTMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFYGLK 580
Query: 453 QK 454
QK
Sbjct: 581 QK 582
>AT2G40700.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:16976783-16979392
FORWARD LENGTH=609
Length = 609
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 117/439 (26%), Positives = 181/439 (41%), Gaps = 73/439 (16%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLR-----ALVVVPTRDLAFQVKRVFDGV 124
RD+ VN+PTG+GKT+AY P++ L K R ALV+VPTR+L QV + +
Sbjct: 68 RDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKL 127
Query: 125 ASPLGLRV-GLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGR 183
V G +G A E + R + IL+ATPGR
Sbjct: 128 LHRFHWIVPGYVMGGEKKAKEKA----------------------RLRKGISILIATPGR 165
Query: 184 LMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPC 243
L+DH+ T F ++L +++ DE D +L Y + +++L S + + D P
Sbjct: 166 LLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGE-EDDIVPK 224
Query: 244 SVGALRTRRRCGVERGFKDKPYPRLAKMVLS--ATITQDPGKLVQ--------------- 286
+ ++ + DK LAK+ L I D KL Q
Sbjct: 225 GI----QKQNLLLSATLNDK-VNDLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAE 279
Query: 287 -LNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSL----GGEKCIVFTK 341
+ +H+ Y +P L L + + L+++LK+L +K +VF
Sbjct: 280 DMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFS 339
Query: 342 SVESTHRLCKLLNCFE-------------DLQIDMKEY--SGLQHQCVRSKTLTAFRKGE 386
+ ++ LL+ F+ +L + K + G Q R F+ +
Sbjct: 340 TRDAVDFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEK 399
Query: 387 FQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVR 446
VL+S+D RG+D VR +I YD P YVHR GRTAR G+ G + E+
Sbjct: 400 QAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEID 459
Query: 447 RFKKLMQKAEAGSCEEHIL 465
K+L K S E+ L
Sbjct: 460 YLKEL--KKHGASLTEYPL 476
>AT5G14610.2 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=645
Length = 645
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 124/453 (27%), Positives = 191/453 (42%), Gaps = 92/453 (20%)
Query: 45 SMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQML-----STRVA 99
S G S+ P+Q W + +RD+ + TGSGKTL Y +P L +R+
Sbjct: 178 SAGFSAPSPIQAQSWPIAM----QNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 233
Query: 100 KCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSC 159
+ LV+ PTR+LA Q++ L G+SS + G+
Sbjct: 234 PTI--LVLSPTRELATQIQVE------------ALKFGKSS-------KISCACLYGGAP 272
Query: 160 YDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWL 219
PQ E VDI+VATPGRL D I K +L + YLV+DE DR+L ++
Sbjct: 273 KGPQ---LKEIERGVDIVVATPGRLND-ILEMKRISLHQVSYLVLDEADRMLDMGFE--- 325
Query: 220 PTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQ 279
P + ++ V + T+R+ ++ +AT +
Sbjct: 326 PQIRKI-------------------VNEVPTKRQT----------------LMYTATWPK 350
Query: 280 DPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICET--KVKPL----YLVALLKSLG- 332
+ K+ L P + G + + L + K I +T + P+ L +L+S
Sbjct: 351 EVRKIAADLLVNPAQVNIGNV-----DELVANKSITQTIEVLAPMEKHSRLEQILRSQEP 405
Query: 333 GEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVS 392
G K I+F ST R+C L G + Q R L FR G VLV+
Sbjct: 406 GSKIIIFC----STKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVA 461
Query: 393 SDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLM 452
+D RG+DV+ +R V+NYD P ++ YVHR GRT RAG TG +T + + L+
Sbjct: 462 TDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLI 521
Query: 453 QKAEAGSCEEHILPSSLIDALHTTYQSALEKFK 485
+ E + + P + + T + KF+
Sbjct: 522 KILEG--ANQKVPPQ--VREMATRGGGGMNKFR 550
>AT5G14610.1 | Symbols: | DEAD box RNA helicase family protein |
chr5:4711271-4714713 FORWARD LENGTH=712
Length = 712
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 126/464 (27%), Positives = 195/464 (42%), Gaps = 92/464 (19%)
Query: 34 LLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQM 93
L+ P + S G S+ P+Q W + +RD+ + TGSGKTL Y +P
Sbjct: 235 LVLPANGRMVYSAGFSAPSPIQAQSWPIAMQ----NRDIVAIAKTGSGKTLGYLIPGFMH 290
Query: 94 L-----STRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISEL 148
L +R+ + LV+ PTR+LA Q++ L G+SS
Sbjct: 291 LQRIHNDSRMGPTI--LVLSPTRELATQIQVE------------ALKFGKSSK------- 329
Query: 149 VHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETD 208
+ G+ PQ E VDI+VATPGRL D I K +L + YLV+DE D
Sbjct: 330 ISCACLYGGAPKGPQ---LKEIERGVDIVVATPGRLND-ILEMKRISLHQVSYLVLDEAD 385
Query: 209 RLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRL 268
R+L ++ P + ++ V + T+R+
Sbjct: 386 RMLDMGFE---PQIRKI-------------------VNEVPTKRQT-------------- 409
Query: 269 AKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICET--KVKPL---- 322
++ +AT ++ K+ L P + G + + L + K I +T + P+
Sbjct: 410 --LMYTATWPKEVRKIAADLLVNPAQVNIGNV-----DELVANKSITQTIEVLAPMEKHS 462
Query: 323 YLVALLKSL-GGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTA 381
L +L+S G K I+F ST R+C L G + Q R L
Sbjct: 463 RLEQILRSQEPGSKIIIFC----STKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQ 518
Query: 382 FRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
FR G VLV++D RG+DV+ +R V+NYD P ++ YVHR GRT RAG TG +T
Sbjct: 519 FRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFG 578
Query: 442 KDEVRRFKKLMQKAEAGSCEEHILPSSLIDALHTTYQSALEKFK 485
+ + L++ E + + P + + T + KF+
Sbjct: 579 DQDAKHASDLIKILEG--ANQKVPPQ--VREMATRGGGGMNKFR 618
>AT3G61240.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 176/405 (43%), Gaps = 72/405 (17%)
Query: 71 DLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGL 130
D+ + G+GKT A+ +P+++ + ++A+++VPTR+LA Q +V ++ L +
Sbjct: 163 DILARAKNGTGKTGAFCIPVLEKIDPN-NNVIQAMILVPTRELALQTSQVCKELSKYLNI 221
Query: 131 RVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINT 190
+V + G +S+ D+I +R V +LV TPGR++D T
Sbjct: 222 QVMVTTGGTSLRDDI----------------------MRLHQPVHLLVGTPGRILDL--T 257
Query: 191 TKGF-TLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALR 249
KG L+ LV+DE D+LL +Q L +++ N A FP +V A +
Sbjct: 258 KKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSAT--FPVTVKAFK 315
Query: 250 TRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLE 309
R KPY +NL L L Y E E
Sbjct: 316 DRHL--------RKPY--------------------VINLMDQLTLMGVTQYYAFVE--E 345
Query: 310 SYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGL 369
K+ C L L L + I+F SV L K + +L
Sbjct: 346 RQKVHC--------LNTLFSKLQINQSIIFCNSVNRVELLAKKIT---ELGYSCFYIHAK 394
Query: 370 QHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTAR 429
Q R++ FR G + LV +D TRG+D++ V VIN+D P+ ++Y+HR GR+ R
Sbjct: 395 MVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 454
Query: 430 AGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSLIDALH 474
G G L++ ++ RFK + E G+ E +PS++ A++
Sbjct: 455 FGHLGLAVNLVTYED--RFKMYQTEQELGT-EIKPIPSNIDQAIY 496
>AT3G61240.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:22666590-22669154 FORWARD LENGTH=498
Length = 498
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 176/405 (43%), Gaps = 72/405 (17%)
Query: 71 DLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGL 130
D+ + G+GKT A+ +P+++ + ++A+++VPTR+LA Q +V ++ L +
Sbjct: 163 DILARAKNGTGKTGAFCIPVLEKIDPN-NNVIQAMILVPTRELALQTSQVCKELSKYLNI 221
Query: 131 RVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINT 190
+V + G +S+ D+I +R V +LV TPGR++D T
Sbjct: 222 QVMVTTGGTSLRDDI----------------------MRLHQPVHLLVGTPGRILDL--T 257
Query: 191 TKGF-TLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALR 249
KG L+ LV+DE D+LL +Q L +++ N A FP +V A +
Sbjct: 258 KKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSAT--FPVTVKAFK 315
Query: 250 TRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLE 309
R KPY +NL L L Y E E
Sbjct: 316 DRHL--------RKPY--------------------VINLMDQLTLMGVTQYYAFVE--E 345
Query: 310 SYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGL 369
K+ C L L L + I+F SV L K + +L
Sbjct: 346 RQKVHC--------LNTLFSKLQINQSIIFCNSVNRVELLAKKIT---ELGYSCFYIHAK 394
Query: 370 QHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTAR 429
Q R++ FR G + LV +D TRG+D++ V VIN+D P+ ++Y+HR GR+ R
Sbjct: 395 MVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGR 454
Query: 430 AGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSLIDALH 474
G G L++ ++ RFK + E G+ E +PS++ A++
Sbjct: 455 FGHLGLAVNLVTYED--RFKMYQTEQELGT-EIKPIPSNIDQAIY 496
>AT5G63120.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25318967-25322071
REVERSE LENGTH=591
Length = 591
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 113/424 (26%), Positives = 189/424 (44%), Gaps = 80/424 (18%)
Query: 42 ALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLST--RVA 99
A+ +G + P+Q W + RDL + TGSGKTLAY LP + +S R+
Sbjct: 179 AIAKLGFTEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 100 KCLRALVVV--PTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAG 157
+ +V++ PTR+LA Q++ + GLR G+ S ++ G
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEE----SRKFGLRSGVR----------STCIY-----GG 275
Query: 158 SCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQS 217
+ PQ R V+I++ATPGRL+D + + L+ + YLV+DE DR+L ++
Sbjct: 276 APKGPQIRDLRR---GVEIVIATPGRLIDMLEC-QHTNLKRVTYLVLDEADRMLDMGFE- 330
Query: 218 WLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATI 277
P + ++ V +R R+ ++ SAT
Sbjct: 331 --PQIRKI-------------------VSQIRPDRQT----------------LLWSATW 353
Query: 278 TQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSL-GGEKC 336
++ L + L P G + +++ I T K L+ LLK L G K
Sbjct: 354 PREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKI 413
Query: 337 IVFTKSVESTHRLCKLL--NCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSD 394
++F ++ ++ + L + + L I G + Q R + L F+ G ++ ++D
Sbjct: 414 LIFVETKRGCDQVTRQLRMDGWPALAI-----HGDKTQSERDRVLAEFKSGRSPIMTATD 468
Query: 395 AMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDE---VRRFKKL 451
RG+DV+ ++ V+NYD P ++ Y+HR GRT RAG G FT + D R K+
Sbjct: 469 VAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKI 528
Query: 452 MQKA 455
+Q+A
Sbjct: 529 LQEA 532
>AT4G00660.1 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 179/410 (43%), Gaps = 95/410 (23%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLG 129
RD+ + G+GKT A+ +P+++ + + ++A+++VPTR+LA Q +V + L
Sbjct: 169 RDILARAKNGTGKTAAFCIPVLEKID-QDNNVIQAVIIVPTRELALQTSQVCKELGKHLK 227
Query: 130 LRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHIN 189
++V + G +S+ D+I L Y P H +LV TPGR++D
Sbjct: 228 IQVMVTTGGTSLKDDIMRL-----------YQPVH-----------LLVGTPGRILDL-- 263
Query: 190 TTKGF-TLEHLHYLVVDETDRLLREAYQ-------SWLPTVLELAQSNDDSFSQPADSFF 241
T KG L+ LV+DE D+LL + +Q S+LP ++ FS + F
Sbjct: 264 TKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILM-----FS----ATF 314
Query: 242 PCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMR 301
P +V + R F PY +NL L L+
Sbjct: 315 PVTVKDFKDR--------FLTNPY--------------------VINLMDELTLKGITQF 346
Query: 302 YRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLL-----NCF 356
Y E E K+ C L L L + I+F SV L K + +CF
Sbjct: 347 YAFVE--ERQKIHC--------LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCF 396
Query: 357 EDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKY 416
++++ R++ FR G + LV +D TRG+D++ V VIN+D PK
Sbjct: 397 YIHAKMLQDH--------RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKN 448
Query: 417 IKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILP 466
+TY+HR GR+ R G G L++ ++ RF + E G+ + I P
Sbjct: 449 AETYLHRVGRSGRFGHLGLAVNLITYED--RFNLYRIEQELGTEIKQIPP 496
>AT4G00660.2 | Symbols: RH8, ATRH8 | RNAhelicase-like 8 |
chr4:274638-277438 FORWARD LENGTH=505
Length = 505
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 112/410 (27%), Positives = 179/410 (43%), Gaps = 95/410 (23%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLG 129
RD+ + G+GKT A+ +P+++ + + ++A+++VPTR+LA Q +V + L
Sbjct: 169 RDILARAKNGTGKTAAFCIPVLEKID-QDNNVIQAVIIVPTRELALQTSQVCKELGKHLK 227
Query: 130 LRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHIN 189
++V + G +S+ D+I L Y P H +LV TPGR++D
Sbjct: 228 IQVMVTTGGTSLKDDIMRL-----------YQPVH-----------LLVGTPGRILDL-- 263
Query: 190 TTKGF-TLEHLHYLVVDETDRLLREAYQ-------SWLPTVLELAQSNDDSFSQPADSFF 241
T KG L+ LV+DE D+LL + +Q S+LP ++ FS + F
Sbjct: 264 TKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILM-----FS----ATF 314
Query: 242 PCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMR 301
P +V + R F PY +NL L L+
Sbjct: 315 PVTVKDFKDR--------FLTNPY--------------------VINLMDELTLKGITQF 346
Query: 302 YRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLL-----NCF 356
Y E E K+ C L L L + I+F SV L K + +CF
Sbjct: 347 YAFVE--ERQKIHC--------LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCF 396
Query: 357 EDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKY 416
++++ R++ FR G + LV +D TRG+D++ V VIN+D PK
Sbjct: 397 YIHAKMLQDH--------RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKN 448
Query: 417 IKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILP 466
+TY+HR GR+ R G G L++ ++ RF + E G+ + I P
Sbjct: 449 AETYLHRVGRSGRFGHLGLAVNLITYED--RFNLYRIEQELGTEIKQIPP 496
>AT1G77030.1 | Symbols: | hydrolases, acting on acid anhydrides, in
phosphorus-containing anhydrides;ATP-dependent
helicases;nucleic acid binding;ATP binding;RNA
binding;helicases | chr1:28947887-28951526 REVERSE
LENGTH=845
Length = 845
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 171/385 (44%), Gaps = 81/385 (21%)
Query: 71 DLCVNSPTGSGKTLAYALPIVQMLSTRVAKC-LRALVVVPTRDLAFQVKRVFDGVASPLG 129
D+ + TGSGKT A+ +P+++ L V + +RAL++ PTRDLA Q + +
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTD 126
Query: 130 LRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHIN 189
LRV L VG S+ D+ EL P D+++ATPGRLM ++
Sbjct: 127 LRVSLLVGGDSMEDQFEELTKGP----------------------DVIIATPGRLMHLLS 164
Query: 190 TTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSV-GAL 248
TL + Y+V DE D L + L +L N + F ++ AL
Sbjct: 165 EVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTL------LFSATLPSAL 218
Query: 249 RTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENL 308
+ G+ P+L ++ + I+ D L L L +R PE
Sbjct: 219 AEFAKAGLRE-------PQLVRLDVENKISPD------LKLSF-LTVR--------PE-- 254
Query: 309 ESYKLICETKVKPLYLVALLKSLGGEKCIVFTKS---VESTHRLCKLLN-----CFEDLQ 360
E Y + LYLV S ++ ++F + VE + L KL N C+ D+
Sbjct: 255 EKYSAL-------LYLVREHIS-SDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMD 306
Query: 361 IDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTY 420
Q R ++ FR + +L+ +D RG+D+ + NVIN+D P K +
Sbjct: 307 -----------QDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIF 355
Query: 421 VHRAGRTARAGQTGRCFTLMSKDEV 445
VHR GR ARAG+TG ++ ++ +++
Sbjct: 356 VHRVGRAARAGRTGCAYSFVTPEDM 380
>AT3G06480.1 | Symbols: | DEAD box RNA helicase family protein |
chr3:1985697-1989666 REVERSE LENGTH=1088
Length = 1088
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/433 (27%), Positives = 178/433 (41%), Gaps = 80/433 (18%)
Query: 35 LHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQML 94
L P++ L S G S P+Q W + RD+ + TGSGKTL Y +P +L
Sbjct: 442 LPPEILRELLSAGFPSPTPIQAQTWPIALQ----SRDIVAIAKTGSGKTLGYLIPAFILL 497
Query: 95 -----STRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELV 149
+R + L++ PTR+LA Q++ LR G S +
Sbjct: 498 RHCRNDSRNGPTV--LILAPTRELATQIQDE--------ALRFGR-----------SSRI 536
Query: 150 HVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDR 209
G+ PQ E DI+VATPGRL D I K + + LV+DE DR
Sbjct: 537 SCTCLYGGAPKGPQ---LKELERGADIVVATPGRLND-ILEMKMIDFQQVSLLVLDEADR 592
Query: 210 LLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLA 269
+L ++ + R ++ PR
Sbjct: 593 MLDMGFEPQI--------------------------------------RKIVNEIPPRRQ 614
Query: 270 KMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPEN--LESYKLICETKVKPLYLVAL 327
++ +AT ++ K+ L P+ + G++ L N + Y + K L +
Sbjct: 615 TLMYTATWPKEVRKIASDLLVNPVQVNIGRVD-ELAANKAITQYVEVVPQMEKERRLEQI 673
Query: 328 LKSLG-GEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGE 386
L+S G K I+F ST RLC L G + Q R L FR G+
Sbjct: 674 LRSQERGSKVIIFC----STKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGK 729
Query: 387 FQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVR 446
VL+++D RG+D++ +R VINYD P ++ YVHR GRT RAG TG FT ++ + +
Sbjct: 730 SCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWK 789
Query: 447 RFKKLMQKAEAGS 459
L++ E +
Sbjct: 790 YAPDLIKVLEGAN 802
>AT2G45810.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:18859836-18862318 FORWARD LENGTH=528
Length = 528
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 110/410 (26%), Positives = 178/410 (43%), Gaps = 82/410 (20%)
Query: 71 DLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGL 130
D+ + G+GKT A+ +P ++ + ++A+++VPTR+LA Q +V ++ L +
Sbjct: 193 DILARAKNGTGKTGAFCIPTLEKIDPE-NNVIQAVILVPTRELALQTSQVCKELSKYLKI 251
Query: 131 RVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINT 190
V + G +S+ D+I L Y P H +LV TPGR++D
Sbjct: 252 EVMVTTGGTSLRDDIMRL-----------YQPVH-----------LLVGTPGRILDL--A 287
Query: 191 TKGF-TLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDS-----FSQPADSFFPCS 244
KG L+ LV+DE D+LL +Q P++ EL Q +S FS + FP +
Sbjct: 288 KKGVCVLKDCAMLVMDEADKLLSVEFQ---PSIEELIQFLPESRQILMFS----ATFPVT 340
Query: 245 VGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRL 304
V + + R + KPY ++ L L L
Sbjct: 341 VKSFKDR--------YLKKPY------------------IINLMDQLTLM---------- 364
Query: 305 PENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMK 364
+ Y E + K L L L + I+F SV L K + +L
Sbjct: 365 --GVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKIT---ELGYSCF 419
Query: 365 EYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRA 424
Q R++ FR G + LV +D TRG+D++ V VIN+D P+ ++Y+HR
Sbjct: 420 YIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRV 479
Query: 425 GRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSLIDALH 474
GR+ R G G L++ ++ RFK + E G+ E +PS + A++
Sbjct: 480 GRSGRFGHLGLAVNLVTYED--RFKMYQTEQELGT-EIKPIPSLIDKAIY 526
>AT1G71370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:26897235-26899381 REVERSE LENGTH=558
Length = 558
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 119/480 (24%), Positives = 199/480 (41%), Gaps = 79/480 (16%)
Query: 33 PLLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQ 92
P L + AL+ G PVQ ET+ +D+ V++ TGSGKTLA+ LP ++
Sbjct: 21 PPLSEDIIEALDRSGFEVCTPVQ----AETIPFLCSHKDVVVDAATGSGKTLAFLLPFIE 76
Query: 93 MLSTRVA-----KCLRALVVVPTRDLAFQVKRVFDGVASPL-GLRVGLAVGQSSVADEIS 146
++ + + +++ PTR+L+ Q+ +V + S L + L VG V +++
Sbjct: 77 IIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMN 136
Query: 147 ELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDE 206
L E ++L+ TPGRL D + + +L L++DE
Sbjct: 137 TLE---------------------EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDE 175
Query: 207 TDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYP 266
DRLL +Q + + + L +RR G+
Sbjct: 176 ADRLLDMGFQKQVNYI----------------------ISRLPKQRRTGL---------- 203
Query: 267 RLAKMVLSATITQDPGKLVQLNLHLPLFLRAG-QMRYRLPENLESYKLICETKVKPLYLV 325
SAT TQ L + L + + +G + + + L L CE K LV
Sbjct: 204 ------FSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLV 257
Query: 326 ALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQ-IDMKEYSGLQHQCVRSKTLTAFRK 384
LL +K +VF + +L+ L+ I G Q R L +F +
Sbjct: 258 HLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTE 317
Query: 385 GEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFT-LMSKD 443
VL+ +D RG+D+ G+ V+ YD P+ ++HR GRTAR + GR LM K+
Sbjct: 318 ASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKE 377
Query: 444 ----EVRRFKKL-MQKAEAGSCEEHILPSSLIDALHTTYQSALEKFKEILSERRKKPKEH 498
E R +++ +Q+ + ++P +I +L ++ LEK + + KEH
Sbjct: 378 TDYVEFMRIRRVPLQERKCSENASDVIP--IIRSLAIKDRAVLEKGLQAFVSFVRAYKEH 435
>AT5G05450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:1612077-1615195
FORWARD LENGTH=593
Length = 593
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 165/392 (42%), Gaps = 75/392 (19%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRVA-----KCLRALVVVPTRDLAFQVKRVFDGV 124
+D+ V++ TGSGKTLA+ +P+V++L + + +++ PTR+L+ Q+ V
Sbjct: 54 KDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPF 113
Query: 125 ASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRL 184
S L ++ ++ V RE + + + E ++L+ TPGRL
Sbjct: 114 VSTLA--------------NVNSVLLVGGREV------KADMKIIEEEGCNVLIGTPGRL 153
Query: 185 MDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCS 244
D + + +L L++DE DRLL +Q + +
Sbjct: 154 SDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYI---------------------- 191
Query: 245 VGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFL--RAGQ--- 299
+ L +RR G+ SAT T+ +L + L P+ + RA
Sbjct: 192 ISRLPKQRRTGL----------------FSATQTEGVEELAKAGLRNPVRVEVRAKSKSE 235
Query: 300 -----MRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLN 354
+ P L + CE K LV LL +K IVF + S +L+
Sbjct: 236 SSQQLTNSKTPSGLHLEYMECEADKKSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLS 295
Query: 355 CFEDLQ-IDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDM 413
L+ I + G Q R K L +F K L+ +D RG+D+ G+ V+ YD
Sbjct: 296 KIPALKSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDP 355
Query: 414 PKYIKTYVHRAGRTARAGQTGRCFT-LMSKDE 444
P+ + HRAGRTAR G+ GR L+ K+E
Sbjct: 356 PQDPNMFNHRAGRTARLGRQGRAIVFLLPKEE 387
>AT3G58570.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:21657099-21660352
FORWARD LENGTH=646
Length = 646
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 109/409 (26%), Positives = 177/409 (43%), Gaps = 86/409 (21%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQML-------STRVAKCLRALVVV--PTRDLAFQVKRV 120
RDL + TGSGKT A+ PI+ + R + + L V+ PTR+LA Q+
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 121 FDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVAT 180
+ G++V +A G + V +I EL E VDILVAT
Sbjct: 244 ARKFSYQTGVKVVVAYGGTPVNQQIREL----------------------ERGVDILVAT 281
Query: 181 PGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSF 240
PGRL D + + +L+ + +L +DE DR+L ++ P + ++ Q
Sbjct: 282 PGRLNDLLERGR-VSLQMVRFLALDEADRMLDMGFE---PQIRKIVQQ------------ 325
Query: 241 FPCSVGALRTRRRCGVERGFKDKPYPRLAK-MVLSATITQDPGKLVQLNLHLPLFLRAGQ 299
D P P + + M+ SAT ++ +L L +FL G+
Sbjct: 326 --------------------MDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGR 365
Query: 300 MRYRLPENLESYKLICETKVKPLYLVALL---KSLGGEK----CIVFTKSVESTHRLCKL 352
+ ++ + + ++ K +L+ LL + G + +VF ++ + L
Sbjct: 366 VGSSTDLIVQRVEFVHDSD-KRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENW 424
Query: 353 L--NCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVIN 410
L N F I G + Q R L +F+ G +LV++D RG+D+ V +V+N
Sbjct: 425 LCINGFPATTI-----HGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVN 479
Query: 411 YDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFK---KLMQKAE 456
+D+P I YVHR GRT RAG +G + + K +LMQ+A
Sbjct: 480 FDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEAN 528
>AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19429083-19431617
REVERSE LENGTH=760
Length = 760
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 169/385 (43%), Gaps = 74/385 (19%)
Query: 70 RDLCVNSPTGSGKTLAYALP-IVQMLST---RVAKCLRALVVVPTRDLAFQVKRVFDGVA 125
RD+ + TGSGKT A+ LP IV ++ + + ++ PTR+LA Q+ +
Sbjct: 266 RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFS 325
Query: 126 SPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLM 185
GLRV G S +H F ++ +I+VATPGRL+
Sbjct: 326 KAYGLRVSAVYGGMS----------------------KHEQFKELKAGCEIVVATPGRLI 363
Query: 186 DHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSV 245
D + K T+ YLV+DE DR+ ++ + ++ V
Sbjct: 364 DMLKM-KALTMMRASYLVLDEADRMFDLGFEPQVRSI----------------------V 400
Query: 246 GALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLP 305
G +R R+ ++ SAT+ KL + L P+ + G++
Sbjct: 401 GQIRPDRQT----------------LLFSATMPWKVEKLAREILSDPIRVTVGEVGMANE 444
Query: 306 ENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCK---LLNCFEDLQID 362
+ + +I K +L+ L + E ++ S ++T + LN F+
Sbjct: 445 DITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFK----- 499
Query: 363 MKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVH 422
+ G + Q R +TL F+ G VL+++D RG+D++ ++ V+NYD+ K + +VH
Sbjct: 500 VAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVH 559
Query: 423 RAGRTARAG-QTGRCFTLMSKDEVR 446
R GRT RAG + G +TL+++ E R
Sbjct: 560 RIGRTGRAGDRDGVAYTLVTQREAR 584
>AT2G42520.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:17705382-17708744
FORWARD LENGTH=633
Length = 633
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 178/407 (43%), Gaps = 84/407 (20%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQML-------STRVAKCLRALVVV--PTRDLAFQVKRV 120
RDL + TGSGKT A+ PI+ + R ++ + L V+ PTR+LA Q+
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 121 FDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVAT 180
+ G++V +A G + + ++ EL E VDILVAT
Sbjct: 257 AKKFSYQTGVKVVVAYGGTPINQQLREL----------------------ERGVDILVAT 294
Query: 181 PGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSF 240
PGRL D + + +++ + +L +DE DR+L ++ P + ++ + D
Sbjct: 295 PGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFE---PQIRKIVEQMD---------- 340
Query: 241 FPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQM 300
P RG + ++ SAT ++ +L L +FL G++
Sbjct: 341 MP--------------PRGVRQT-------LLFSATFPREIQRLAADFLANYIFLAVGRV 379
Query: 301 RYRLPENLESYKLICETKVKPLYLVALL-----KSLGGEKCI--VFTKSVESTHRLCKLL 353
++ + + ++ K +L+ LL + G++ + VF ++ L L
Sbjct: 380 GSSTDLIVQRVEFVLDSD-KRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWL 438
Query: 354 --NCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINY 411
N F I G + Q R L AF+ G +LV++D RG+D+ V +V+N+
Sbjct: 439 CINGFPATSI-----HGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNF 493
Query: 412 DMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDE---VRRFKKLMQKA 455
D+P I YVHR GRT RAG++G + R +LMQ+A
Sbjct: 494 DLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEA 540
>AT1G20920.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7286356-7288842
FORWARD LENGTH=828
Length = 828
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 172/397 (43%), Gaps = 77/397 (19%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTR----VAKCLRALVVVPTRDLAFQVKRVFDGVA 125
RD + TGSGKTL + LP+++ + + LV+ PTR+L Q+ +
Sbjct: 229 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFS 288
Query: 126 SPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLM 185
PLG+R G S VA +ISEL + +I+V TPGR++
Sbjct: 289 KPLGIRCVPVYGGSGVAQQISEL----------------------KRGTEIVVCTPGRMI 326
Query: 186 DHINTTKG--FTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDS--FSQPADSFF 241
D + T+ G L + +LV+DE DR+ ++ + +++ + + FS + F
Sbjct: 327 DILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFS----ATF 382
Query: 242 PCSVGALRTRRRCGVERGFKDKPYPRL--AKMVLSATITQDPGKLVQLNLHLPLFLRAGQ 299
P V L R +KP + V++ ITQ LV++ FLR
Sbjct: 383 PRQVETL--------ARKVLNKPVEIQVGGRSVVNKDITQ----LVEVRPESDRFLRL-- 428
Query: 300 MRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDL 359
+L+ E K LV + EKC + + + C L+
Sbjct: 429 -----------LELLGEWSEKGKILVFVQSQ---EKCDALYRDMIKSSYPCLSLH----- 469
Query: 360 QIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKT 419
G + Q R T++ F+ +L+++ RG+DV+ + V+N+D P + +
Sbjct: 470 --------GGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYED 521
Query: 420 YVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAE 456
YVHR GRT RAG+ G T +S+D+ + L++ E
Sbjct: 522 YVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALE 558
>AT1G55150.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:20574634-20577141 FORWARD LENGTH=501
Length = 501
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 175/416 (42%), Gaps = 77/416 (18%)
Query: 43 LESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRV---- 98
++ G + P+Q W + RDL + TGSGKTL+Y LP + ++ +
Sbjct: 114 VKKAGFTEPTPIQSQGWPMAMK----GRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 99 AKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGS 158
LV+ PTR+LA Q+++ S ++ G ++ +L
Sbjct: 170 GDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDL---------- 219
Query: 159 CYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSW 218
+ V+I++ATPGRL+D + + L + YLV+DE DR+L +
Sbjct: 220 ------------QKGVEIVIATPGRLIDMMESNN-TNLRRVTYLVLDEADRMLDMGFD-- 264
Query: 219 LPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATIT 278
P + ++ V +R R+ + SAT
Sbjct: 265 -PQIRKI-------------------VSHIRPDRQT----------------LYWSATWP 288
Query: 279 QDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKS-LGGEKCI 337
++ +L + L+ P + G + + + K LV LL+ + G + +
Sbjct: 289 KEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRIL 348
Query: 338 VFTKSVESTHRLCKLL--NCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDA 395
VF + + ++ + L + + L I G + Q R L+ FR G+ ++ ++D
Sbjct: 349 VFLDTKKGCDQITRQLRMDGWPALSI-----HGDKSQAERDWVLSEFRSGKSPIMTATDV 403
Query: 396 MTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKL 451
RG+DV+ V+ VINYD P ++ YVHR GRT RAG G +T + R K+L
Sbjct: 404 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKEL 459
>AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285342-7288842
FORWARD LENGTH=1166
Length = 1166
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 172/397 (43%), Gaps = 77/397 (19%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTR----VAKCLRALVVVPTRDLAFQVKRVFDGVA 125
RD + TGSGKTL + LP+++ + + LV+ PTR+L Q+ +
Sbjct: 567 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFS 626
Query: 126 SPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLM 185
PLG+R G S VA +ISEL + +I+V TPGR++
Sbjct: 627 KPLGIRCVPVYGGSGVAQQISEL----------------------KRGTEIVVCTPGRMI 664
Query: 186 DHINTTKG--FTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDS--FSQPADSFF 241
D + T+ G L + +LV+DE DR+ ++ + +++ + + FS + F
Sbjct: 665 DILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFS----ATF 720
Query: 242 PCSVGALRTRRRCGVERGFKDKPYPRL--AKMVLSATITQDPGKLVQLNLHLPLFLRAGQ 299
P V L R +KP + V++ ITQ LV++ FLR
Sbjct: 721 PRQVETL--------ARKVLNKPVEIQVGGRSVVNKDITQ----LVEVRPESDRFLRL-- 766
Query: 300 MRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDL 359
+L+ E K LV + EKC + + + C L+
Sbjct: 767 -----------LELLGEWSEKGKILVFVQSQ---EKCDALYRDMIKSSYPCLSLH----- 807
Query: 360 QIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKT 419
G + Q R T++ F+ +L+++ RG+DV+ + V+N+D P + +
Sbjct: 808 --------GGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYED 859
Query: 420 YVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAE 456
YVHR GRT RAG+ G T +S+D+ + L++ E
Sbjct: 860 YVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALE 896
>AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479921-11482707 FORWARD LENGTH=537
Length = 537
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 168/405 (41%), Gaps = 88/405 (21%)
Query: 53 PVQLAVWQETVGPGNFD-RDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRA------- 104
P+Q W P D RDL + TGSGKTLA+ +P + + + K
Sbjct: 139 PIQSHTW-----PFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 105 -LVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQ 163
LV+ PTR+LA Q+ V P GL+ G SS +IS +
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAI--------------- 238
Query: 164 HALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVL 223
S VDI++ TPGRL D I + L + ++V+DE DR+L ++ P
Sbjct: 239 -------RSGVDIVIGTPGRLRDLIESNV-LRLSDVSFVVLDEADRMLDMGFEE--PVRF 288
Query: 224 ELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVL-SATITQDPG 282
L+ +N ++ +MV+ SAT D
Sbjct: 289 ILSNTN-------------------------------------KVRQMVMFSATWPLDVH 311
Query: 283 KLVQLNLH-LPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSL---GGEKCIV 338
KL Q + P+ + G + ++ + + + + L+ALL+ + +V
Sbjct: 312 KLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLV 371
Query: 339 FTKSVESTHRLCKLLNCFEDLQIDMKEYS--GLQHQCVRSKTLTAFRKGEFQVLVSSDAM 396
F RL + L Q K S G + Q R+++L+ F++G +LV++D
Sbjct: 372 FALYKVEAERLERFLQ-----QRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVA 426
Query: 397 TRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
RG+D+ V VINY P + YVHR GRT RAG+ G T +
Sbjct: 427 ARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFT 471
>AT3G13920.4 | Symbols: EIF4A1 | eukaryotic translation initiation
factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407
Length = 407
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 183/424 (43%), Gaps = 82/424 (19%)
Query: 57 AVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQ 116
A+ Q + P D+ + +G+GKT + ++Q L + +C +ALV+ PTR+LA Q
Sbjct: 59 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQC-QALVLAPTRELAQQ 117
Query: 117 VKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDI 176
+++V + LG++V VG +SV ++ Q L ++ V +
Sbjct: 118 IEKVMRALGDYLGVKVHACVGGTSVRED------------------QRIL----QAGVHV 155
Query: 177 LVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQP 236
+V TPGR+ D + + +++ V+DE D +L
Sbjct: 156 VVGTPGRVFDMLKR-QSLRADNIKMFVLDEADEML------------------------- 189
Query: 237 ADSFFPCSVGALRTRRRCGVERGFKDKPY-------PRLAKMVLSATITQDPGKLVQLNL 289
RGFKD+ Y P++ V SAT+ + ++ + +
Sbjct: 190 --------------------SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 229
Query: 290 HLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRL 349
P+ + + L + Y + + + K L L ++L + ++F V + ++
Sbjct: 230 SKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF---VNTRRKV 286
Query: 350 CKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVI 409
L + + G Q R + FR G +VL+++D + RG+DV+ V VI
Sbjct: 287 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346
Query: 410 NYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSL 469
N+D+P + Y+HR GR+ R G+ G +++D+ R + QK EE LPS++
Sbjct: 347 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI-QKFYNVVVEE--LPSNV 403
Query: 470 IDAL 473
D L
Sbjct: 404 ADLL 407
>AT3G13920.1 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594128 REVERSE
LENGTH=412
Length = 412
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 183/424 (43%), Gaps = 82/424 (19%)
Query: 57 AVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQ 116
A+ Q + P D+ + +G+GKT + ++Q L + +C +ALV+ PTR+LA Q
Sbjct: 64 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQC-QALVLAPTRELAQQ 122
Query: 117 VKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDI 176
+++V + LG++V VG +SV ++ Q L ++ V +
Sbjct: 123 IEKVMRALGDYLGVKVHACVGGTSVRED------------------QRIL----QAGVHV 160
Query: 177 LVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQP 236
+V TPGR+ D + + +++ V+DE D +L
Sbjct: 161 VVGTPGRVFDMLKR-QSLRADNIKMFVLDEADEML------------------------- 194
Query: 237 ADSFFPCSVGALRTRRRCGVERGFKDKPY-------PRLAKMVLSATITQDPGKLVQLNL 289
RGFKD+ Y P++ V SAT+ + ++ + +
Sbjct: 195 --------------------SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 234
Query: 290 HLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRL 349
P+ + + L + Y + + + K L L ++L + ++F V + ++
Sbjct: 235 SKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF---VNTRRKV 291
Query: 350 CKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVI 409
L + + G Q R + FR G +VL+++D + RG+DV+ V VI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351
Query: 410 NYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSL 469
N+D+P + Y+HR GR+ R G+ G +++D+ R + QK EE LPS++
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI-QKFYNVVVEE--LPSNV 408
Query: 470 IDAL 473
D L
Sbjct: 409 ADLL 412
>AT3G13920.3 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592635-4594094 REVERSE
LENGTH=402
Length = 402
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 101/424 (23%), Positives = 183/424 (43%), Gaps = 82/424 (19%)
Query: 57 AVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQ 116
A+ Q + P D+ + +G+GKT + ++Q L + +C +ALV+ PTR+LA Q
Sbjct: 54 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQC-QALVLAPTRELAQQ 112
Query: 117 VKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDI 176
+++V + LG++V VG +SV ++ Q L ++ V +
Sbjct: 113 IEKVMRALGDYLGVKVHACVGGTSVRED------------------QRIL----QAGVHV 150
Query: 177 LVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQP 236
+V TPGR+ D + + +++ V+DE D +L
Sbjct: 151 VVGTPGRVFDMLKR-QSLRADNIKMFVLDEADEML------------------------- 184
Query: 237 ADSFFPCSVGALRTRRRCGVERGFKDKPY-------PRLAKMVLSATITQDPGKLVQLNL 289
RGFKD+ Y P++ V SAT+ + ++ + +
Sbjct: 185 --------------------SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 224
Query: 290 HLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRL 349
P+ + + L + Y + + + K L L ++L + ++F V + ++
Sbjct: 225 SKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF---VNTRRKV 281
Query: 350 CKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVI 409
L + + G Q R + FR G +VL+++D + RG+DV+ V VI
Sbjct: 282 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 341
Query: 410 NYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSL 469
N+D+P + Y+HR GR+ R G+ G +++D+ R + QK EE LPS++
Sbjct: 342 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI-QKFYNVVVEE--LPSNV 398
Query: 470 IDAL 473
D L
Sbjct: 399 ADLL 402
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20841456-20843645 FORWARD LENGTH=591
Length = 591
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 173/404 (42%), Gaps = 83/404 (20%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQ-------MLSTRVAKCLRALVVVPTRDLAFQVKRVFD 122
RD+ + TGSGKTL + LP++ M+ + L+V P+R+LA Q V +
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVE 243
Query: 123 GVASPL------GLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDI 176
+PL LR L +G + ++ E+V + V I
Sbjct: 244 QFVAPLVEAGYPPLRSLLCIGGIDMRSQL-EVV---------------------KRGVHI 281
Query: 177 LVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQP 236
+VATPGRL D + K +L+ YL +DE DRL+ ++ D +
Sbjct: 282 VVATPGRLKDML-AKKKMSLDACRYLTLDEADRLVDLGFE--------------DDIREV 326
Query: 237 ADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLR 296
D F +++R+ + A+ L +T + G+ NL +
Sbjct: 327 FDHF--------KSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDV----- 373
Query: 297 AGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCF 356
++ Y E Y L C K P L+ V+ H LL
Sbjct: 374 IQEVEYVKQEAKIVYLLECLQKTSPPVLIFCENK----------ADVDDIHEYL-LLKGV 422
Query: 357 EDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKY 416
E + I G + Q R +++F+ G+ VLV++D ++G+D +++VINYDMP
Sbjct: 423 EAVAI-----HGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE 477
Query: 417 IKTYVHRAGRTARAGQTGRCFTLMSKDE----VRRFKKLMQKAE 456
I+ YVHR GRT R G+TG T ++K++ + K L+Q+A+
Sbjct: 478 IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAK 521
>AT3G58510.3 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 175/404 (43%), Gaps = 78/404 (19%)
Query: 69 DRDLCVNSPTGSGKTLAYALPIVQML-------STRVAKCLR--ALVVVPTRDLAFQVKR 119
+RDL + TGSGKT A+ PI+ + R ++ + A+++ PTR+LA Q+
Sbjct: 188 ERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHD 247
Query: 120 VFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVA 179
+ G++V +A G + + ++ EL E DILVA
Sbjct: 248 EAKKFSYQTGVKVVVAYGGTPIHQQLREL----------------------ERGCDILVA 285
Query: 180 TPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADS 239
TPGRL D + + +++ + +L +DE DR+L ++ P + ++ + D
Sbjct: 286 TPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFE---PQIRKIVEQMD--------- 332
Query: 240 FFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQ 299
P RG + M+ SAT +L + +FL G+
Sbjct: 333 -MP--------------PRGVRQT-------MLFSATFPSQIQRLAADFMSNYIFLAVGR 370
Query: 300 MRYRLPENLESYKLICETKVKPLYLVALLKSLGGEK-----CIVFTKSVESTHRLCKLLN 354
+ + + + E+ K +L+ LL + + +VF ++ L L
Sbjct: 371 VGSSTDLITQRVEFVQESD-KRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWL- 428
Query: 355 CFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMP 414
C + G + Q R L +F+ G +LV++D RG+D+ V +V+N+D+P
Sbjct: 429 CMNEFP--ATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLP 486
Query: 415 KYIKTYVHRAGRTARAGQTGRCFTLMSKDE---VRRFKKLMQKA 455
I YVHR GRT RAG++G +++ R +LMQ+A
Sbjct: 487 NDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEA 530
>AT3G58510.2 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 175/404 (43%), Gaps = 78/404 (19%)
Query: 69 DRDLCVNSPTGSGKTLAYALPIVQML-------STRVAKCLR--ALVVVPTRDLAFQVKR 119
+RDL + TGSGKT A+ PI+ + R ++ + A+++ PTR+LA Q+
Sbjct: 188 ERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHD 247
Query: 120 VFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVA 179
+ G++V +A G + + ++ EL E DILVA
Sbjct: 248 EAKKFSYQTGVKVVVAYGGTPIHQQLREL----------------------ERGCDILVA 285
Query: 180 TPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADS 239
TPGRL D + + +++ + +L +DE DR+L ++ P + ++ + D
Sbjct: 286 TPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFE---PQIRKIVEQMD--------- 332
Query: 240 FFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQ 299
P RG + M+ SAT +L + +FL G+
Sbjct: 333 -MP--------------PRGVRQT-------MLFSATFPSQIQRLAADFMSNYIFLAVGR 370
Query: 300 MRYRLPENLESYKLICETKVKPLYLVALLKSLGGEK-----CIVFTKSVESTHRLCKLLN 354
+ + + + E+ K +L+ LL + + +VF ++ L L
Sbjct: 371 VGSSTDLITQRVEFVQESD-KRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWL- 428
Query: 355 CFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMP 414
C + G + Q R L +F+ G +LV++D RG+D+ V +V+N+D+P
Sbjct: 429 CMNEFP--ATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLP 486
Query: 415 KYIKTYVHRAGRTARAGQTGRCFTLMSKDE---VRRFKKLMQKA 455
I YVHR GRT RAG++G +++ R +LMQ+A
Sbjct: 487 NDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEA 530
>AT3G58510.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:21640608-21643464 FORWARD LENGTH=612
Length = 612
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 175/404 (43%), Gaps = 78/404 (19%)
Query: 69 DRDLCVNSPTGSGKTLAYALPIVQML-------STRVAKCLR--ALVVVPTRDLAFQVKR 119
+RDL + TGSGKT A+ PI+ + R ++ + A+++ PTR+LA Q+
Sbjct: 188 ERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHD 247
Query: 120 VFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVA 179
+ G++V +A G + + ++ EL E DILVA
Sbjct: 248 EAKKFSYQTGVKVVVAYGGTPIHQQLREL----------------------ERGCDILVA 285
Query: 180 TPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADS 239
TPGRL D + + +++ + +L +DE DR+L ++ P + ++ + D
Sbjct: 286 TPGRLNDLLERAR-VSMQMIRFLALDEADRMLDMGFE---PQIRKIVEQMD--------- 332
Query: 240 FFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQ 299
P RG + M+ SAT +L + +FL G+
Sbjct: 333 -MP--------------PRGVRQT-------MLFSATFPSQIQRLAADFMSNYIFLAVGR 370
Query: 300 MRYRLPENLESYKLICETKVKPLYLVALLKSLGGEK-----CIVFTKSVESTHRLCKLLN 354
+ + + + E+ K +L+ LL + + +VF ++ L L
Sbjct: 371 VGSSTDLITQRVEFVQESD-KRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWL- 428
Query: 355 CFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMP 414
C + G + Q R L +F+ G +LV++D RG+D+ V +V+N+D+P
Sbjct: 429 CMNEFP--ATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLP 486
Query: 415 KYIKTYVHRAGRTARAGQTGRCFTLMSKDE---VRRFKKLMQKA 455
I YVHR GRT RAG++G +++ R +LMQ+A
Sbjct: 487 NDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEA 530
>AT4G09730.1 | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD
LENGTH=621
Length = 621
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 184/432 (42%), Gaps = 76/432 (17%)
Query: 44 ESMGISSLFPVQLAVWQETVG-PGNFDR-DLCVNSPTGSGKTLAYALPIVQMLSTRVAKC 101
E MG +++ + +G P +R + + S TGSGKTLAY LPIVQ++ A
Sbjct: 122 EVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANL 181
Query: 102 L--------RALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPA 153
R +V+ PTR+L+ QV RV ++ R L G
Sbjct: 182 GKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSG---------------- 225
Query: 154 REAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLRE 213
GS PQ + +D++V TPGR++ HI + YLV+DE D +
Sbjct: 226 ---GSRIRPQED---SLNNAIDMVVGTPGRILQHIEEG-NMVYGDIAYLVLDEADTMF-- 276
Query: 214 AYQSWLPTVLELAQSNDDSFSQPADSFF-PCSVGALRTRRRCGVERGFKDKPYPRLAKMV 272
D F F P + AL+T ++GF+ ++
Sbjct: 277 ----------------DRGFGPEIRKFLAPLNQRALKTN-----DQGFQT--------VL 307
Query: 273 LSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLIC--ETKVKPLYLVALLKS 330
++AT+T KLV LR + ++ + + E K++ L V
Sbjct: 308 VTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEPSL 367
Query: 331 LGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFR--KGEFQ 388
G K +VF ++ S+ + L+ + QI Y G R + L F+ +G+
Sbjct: 368 AKGSKVMVFCNTLNSSRAVDHYLS---ENQISTVNYHGEVPAEQRVENLKKFKDEEGDCP 424
Query: 389 VLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDE---V 445
LV +D RG+D++ V +V+ +D PK Y+HR GRTAR G G+ +L+S+ +
Sbjct: 425 TLVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLVSRKDQMLA 483
Query: 446 RRFKKLMQKAEA 457
R ++ M+ E+
Sbjct: 484 ARIEEAMRNNES 495
>AT1G72730.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:27378040-27379593 REVERSE LENGTH=414
Length = 414
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 109/442 (24%), Positives = 189/442 (42%), Gaps = 78/442 (17%)
Query: 35 LHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQML 94
L P L + + G F A+ Q + P D+ + +G+GKT + ++Q L
Sbjct: 48 LQPDLLRGIYAYG----FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQL 103
Query: 95 STRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAR 154
+ +C +ALV+ PTR+LA Q+++V + LG++ VG +SV ++
Sbjct: 104 DISLVQC-QALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVRED---------- 152
Query: 155 EAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREA 214
Q L +S V ++V TPGR+ D + + + + V+DE D +L
Sbjct: 153 --------QRVL----QSGVHVVVGTPGRVFDLLRR-QSLRADAIKMFVLDEADEMLSRG 199
Query: 215 YQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTR---RRCGVERGFKDKPYPRLAKM 271
++ + + +L S VG + R F +KP L K
Sbjct: 200 FKDQIYDIFQLLPSK-------------VQVGVFSATMPPEALEITRKFMNKPVRILVK- 245
Query: 272 VLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSL 331
+D +L L G ++ + + E +KL ET L L ++L
Sbjct: 246 -------RD-----ELTLE-------GIKQFYVNVDKEEWKL--ET------LCDLYETL 278
Query: 332 GGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLV 391
+ ++F V + ++ L + + G Q R + FR G +VL+
Sbjct: 279 AITQSVIF---VNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 335
Query: 392 SSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKL 451
++D + RG+DV+ V VIN+D+P + Y+HR GR+ R G+ G M+ ++ R +
Sbjct: 336 TTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADI 395
Query: 452 MQKAEAGSCEEHILPSSLIDAL 473
Q+ EE LPS++ D L
Sbjct: 396 -QRFYNVVVEE--LPSNVADLL 414
>AT3G13920.2 | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation
initiation factor 4A1 | chr3:4592586-4594128 REVERSE
LENGTH=415
Length = 415
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 171/397 (43%), Gaps = 79/397 (19%)
Query: 57 AVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQ 116
A+ Q + P D+ + +G+GKT + ++Q L + +C +ALV+ PTR+LA Q
Sbjct: 64 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQC-QALVLAPTRELAQQ 122
Query: 117 VKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDI 176
+++V + LG++V VG +SV ++ Q L ++ V +
Sbjct: 123 IEKVMRALGDYLGVKVHACVGGTSVRED------------------QRIL----QAGVHV 160
Query: 177 LVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQP 236
+V TPGR+ D + + +++ V+DE D +L
Sbjct: 161 VVGTPGRVFDMLKR-QSLRADNIKMFVLDEADEML------------------------- 194
Query: 237 ADSFFPCSVGALRTRRRCGVERGFKDKPY-------PRLAKMVLSATITQDPGKLVQLNL 289
RGFKD+ Y P++ V SAT+ + ++ + +
Sbjct: 195 --------------------SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 234
Query: 290 HLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRL 349
P+ + + L + Y + + + K L L ++L + ++F V + ++
Sbjct: 235 SKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF---VNTRRKV 291
Query: 350 CKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVI 409
L + + G Q R + FR G +VL+++D + RG+DV+ V VI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351
Query: 410 NYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVR 446
N+D+P + Y+HR GR+ R G+ G +++D+ R
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388
>AT3G02065.3 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 110/450 (24%), Positives = 191/450 (42%), Gaps = 89/450 (19%)
Query: 35 LHPKLKSALESMGISSLFPVQL-AVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQM 93
L PKL LE+ G P+Q+ A+ G + L ++ TGSGKT ++ +PI+
Sbjct: 117 LPPKLLLNLETAGYDFPTPIQMQAIPAALTG-----KSLLASADTGSGKTASFLVPIISR 171
Query: 94 LSTRVA-------KCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEIS 146
+T + + A+V+ PTR+L QV+ + L + L VG
Sbjct: 172 CTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGG-------- 223
Query: 147 ELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDE 206
DP R + V++++ TPGR++D + + L+++ V+DE
Sbjct: 224 --------------DPMSGQLYRIQQGVELIIGTPGRVVDLL-SKHTIELDNIMTFVLDE 268
Query: 207 TDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYP 266
D +L+ ++ + + + + SQP F ++ R + G
Sbjct: 269 VDCMLQRGFRDQVMQIFQ-------ALSQPQVLLFSATIS--REVEKVG----------G 309
Query: 267 RLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVA 326
LAK ++ +I +P K + L +++ A Q + +L + L S + KP +V
Sbjct: 310 SLAKEIILVSIG-NPNKPNKAVNQLAIWVDAKQKKQKLFDILRS-----QNHFKPPAVVY 363
Query: 327 LLKSLGGE---KCIVFTKSVE--STHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTA 381
+ +G + I V+ S H + MKE R + +
Sbjct: 364 VSSRVGADLLANAITVVTGVKALSIHG-----------EKPMKE---------RRDVMGS 403
Query: 382 FRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
F GE VLVS+ + RG+D+ VR VI +DMP IK Y+H GR +R G+ G ++
Sbjct: 404 FLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVN 463
Query: 442 KDEVRRFKKLMQKAEAGSCEEHILPSSLID 471
+D+ F L+ ++ +P LI+
Sbjct: 464 EDDRNLFPDLVAALKSSGAA---IPKELIN 490
>AT3G02065.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359136-360734
FORWARD LENGTH=505
Length = 505
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 110/450 (24%), Positives = 191/450 (42%), Gaps = 89/450 (19%)
Query: 35 LHPKLKSALESMGISSLFPVQL-AVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQM 93
L PKL LE+ G P+Q+ A+ G + L ++ TGSGKT ++ +PI+
Sbjct: 117 LPPKLLLNLETAGYDFPTPIQMQAIPAALTG-----KSLLASADTGSGKTASFLVPIISR 171
Query: 94 LSTRVA-------KCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEIS 146
+T + + A+V+ PTR+L QV+ + L + L VG
Sbjct: 172 CTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGG-------- 223
Query: 147 ELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDE 206
DP R + V++++ TPGR++D + + L+++ V+DE
Sbjct: 224 --------------DPMSGQLYRIQQGVELIIGTPGRVVDLL-SKHTIELDNIMTFVLDE 268
Query: 207 TDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYP 266
D +L+ ++ + + + + SQP F ++ R + G
Sbjct: 269 VDCMLQRGFRDQVMQIFQ-------ALSQPQVLLFSATIS--REVEKVG----------G 309
Query: 267 RLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVA 326
LAK ++ +I +P K + L +++ A Q + +L + L S + KP +V
Sbjct: 310 SLAKEIILVSIG-NPNKPNKAVNQLAIWVDAKQKKQKLFDILRS-----QNHFKPPAVVY 363
Query: 327 LLKSLGGE---KCIVFTKSVE--STHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTA 381
+ +G + I V+ S H + MKE R + +
Sbjct: 364 VSSRVGADLLANAITVVTGVKALSIHG-----------EKPMKE---------RRDVMGS 403
Query: 382 FRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
F GE VLVS+ + RG+D+ VR VI +DMP IK Y+H GR +R G+ G ++
Sbjct: 404 FLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVN 463
Query: 442 KDEVRRFKKLMQKAEAGSCEEHILPSSLID 471
+D+ F L+ ++ +P LI+
Sbjct: 464 EDDRNLFPDLVAALKSSGAA---IPKELIN 490
>AT3G09720.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2980483-2983268
REVERSE LENGTH=541
Length = 541
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 161/399 (40%), Gaps = 79/399 (19%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLG 129
R+ +PTGSGKT A+ P++ L +RA+++ P R+LA Q R +
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKLIKGSN 238
Query: 130 LRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHIN 189
+ L + S+L D+L++TP RL I
Sbjct: 239 FHIRLMTKPLVKTADFSKLW------------------------CDVLISTPMRLKRAIK 274
Query: 190 TTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALR 249
K L + YLV+DE+D+L ++ + V++ CS
Sbjct: 275 AKK-IDLSKVEYLVLDESDKLFEQSLLKQIDCVVK-----------------ACS----- 311
Query: 250 TRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLE 309
P + + + SAT+ +L + +H + + G R
Sbjct: 312 ---------------NPSIIRSLFSATLPDSVEELARSIMHDAVRVIIG--RKNTASETV 354
Query: 310 SYKLICETKVKPLYLVALLKSLG---GEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEY 366
KL+ + L+AL +S ++F +S E L L C E+++
Sbjct: 355 KQKLVFAGSEEG-KLLALRQSFAESLNPPVLIFVQSKERAKELYDELKC-ENIR------ 406
Query: 367 SGLQHQCV----RSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVH 422
+G+ H + R + FR GE VL+++D + RGMD +G+ VINYD P Y+H
Sbjct: 407 AGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIH 466
Query: 423 RAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCE 461
R GR+ RAG++G T ++ +V + + + CE
Sbjct: 467 RIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCE 505
>AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863790-6866242 FORWARD LENGTH=408
Length = 408
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/404 (22%), Positives = 166/404 (41%), Gaps = 79/404 (19%)
Query: 57 AVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQ 116
A+ Q V P RD+ + +G+GKT AL + Q++ T ++ ++AL++ PTR+LA Q
Sbjct: 60 AIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTS-SREVQALILSPTRELATQ 118
Query: 117 VKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDI 176
++ + ++ +G +SV ++I +L H V +
Sbjct: 119 TEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEH----------------------GVHV 156
Query: 177 LVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQP 236
+ TPGR+ D I + + L++DE+D +L
Sbjct: 157 VSGTPGRVCDMIKR-RSLRTRAIKLLILDESDEML------------------------- 190
Query: 237 ADSFFPCSVGALRTRRRCGVERGFKDKPY-------PRLAKMVLSATITQDPGKLVQLNL 289
RGFKD+ Y P L ++SAT+ + ++ +
Sbjct: 191 --------------------SRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFM 230
Query: 290 HLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRL 349
P+ + + L + + + + + K L L +L + ++F + L
Sbjct: 231 TEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYL 290
Query: 350 CKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVI 409
+ + + G Q R + FR G+ +VL+++D RG+DV+ V VI
Sbjct: 291 SEKMRSH---NFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVI 347
Query: 410 NYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQ 453
NYD+P + Y+HR GR+ R G+ G + D+++ + + Q
Sbjct: 348 NYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQ 391
>AT5G54910.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr5:22298668-22301719 REVERSE LENGTH=739
Length = 739
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 164/392 (41%), Gaps = 73/392 (18%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRV---AKCLRALVVVPTRDLAFQVKRVFDGVAS 126
RD+ + TGSGKTLA+ +PI++ L + +++ PTR+LA Q V + V
Sbjct: 109 RDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGK 168
Query: 127 PLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMD 186
GL +G D E VH +++ILV PGRL+
Sbjct: 169 FHKFSAGLLIGGREGVDVEKERVH----------------------EMNILVCAPGRLLQ 206
Query: 187 HINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVG 246
H++ T F L L++DE DR+L A++ L + +
Sbjct: 207 HMDETPNFECPQLQILILDEADRVLDSAFKGQLDPI----------------------IS 244
Query: 247 ALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRA-GQMRYRLP 305
L R+ ++ SAT T+ L +L+L P ++ + P
Sbjct: 245 QLPKHRQT----------------LLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATP 288
Query: 306 ENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLN-CFEDLQ--ID 362
+L +I + K L + +K+ + +VF ST + K ++ F L+ I
Sbjct: 289 TSLMQTVMIVPVEKKLDMLWSFIKTHLNSRILVFL----STKKQVKFVHEAFNKLRPGIP 344
Query: 363 MKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVE-GVRNVINYDMPKYIKTYV 421
+K G Q R + F + + VL +D + RG+D + V V+ D P+ + +Y+
Sbjct: 345 LKSLHGKMSQEKRMGVYSQFIERQ-SVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYI 403
Query: 422 HRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQ 453
HR GRTAR G+ ++ E + +KL +
Sbjct: 404 HRVGRTARFYTQGKSLLFLTPSEEKMIEKLQE 435
>AT1G54270.2 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=407
Length = 407
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 103/449 (22%), Positives = 189/449 (42%), Gaps = 86/449 (19%)
Query: 36 HPKLKSALESMGISSL----FPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIV 91
+ ++ + ++MG+ F A+ Q + P D+ + +G+GKT + ++
Sbjct: 34 YDEVHESFDAMGLQENLLRGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVL 93
Query: 92 QMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHV 151
Q L + +C +ALV+ PTR+LA Q+++V + G++V VG +SV ++
Sbjct: 94 QQLDYALLQC-QALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVRED------- 145
Query: 152 PAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLL 211
Q L ++ V ++V TPGR+ D + + + + V+DE D +L
Sbjct: 146 -----------QRIL----QAGVHVVVGTPGRVFDMLRR-QSLRPDCIKMFVLDEADEML 189
Query: 212 REAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPY------ 265
RGFKD+ Y
Sbjct: 190 ---------------------------------------------SRGFKDQIYDIFQLL 204
Query: 266 -PRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYL 324
P++ V SAT+ + ++ + + P+ + + L + Y + + K L
Sbjct: 205 PPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETL 264
Query: 325 VALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRK 384
L ++L + ++F V + ++ L + + G Q R + FR
Sbjct: 265 CDLYETLAITQSVIF---VNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 321
Query: 385 GEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDE 444
G +VL+++D + RG+DV+ V VIN+D+P + Y+HR GR+ R G+ G ++ D+
Sbjct: 322 GSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDD 381
Query: 445 VRRFKKLMQKAEAGSCEEHILPSSLIDAL 473
R + QK EE LPS++ D L
Sbjct: 382 QRMLFDI-QKFYNVVVEE--LPSNVADLL 407
>AT1G54270.1 | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018
FORWARD LENGTH=412
Length = 412
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 179/424 (42%), Gaps = 82/424 (19%)
Query: 57 AVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQ 116
A+ Q + P D+ + +G+GKT + ++Q L + +C +ALV+ PTR+LA Q
Sbjct: 64 AIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQC-QALVLAPTRELAQQ 122
Query: 117 VKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDI 176
+++V + G++V VG +SV ++ Q L ++ V +
Sbjct: 123 IEKVMRALGDYQGVKVHACVGGTSVRED------------------QRIL----QAGVHV 160
Query: 177 LVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQP 236
+V TPGR+ D + + + + V+DE D +L
Sbjct: 161 VVGTPGRVFDMLRR-QSLRPDCIKMFVLDEADEML------------------------- 194
Query: 237 ADSFFPCSVGALRTRRRCGVERGFKDKPY-------PRLAKMVLSATITQDPGKLVQLNL 289
RGFKD+ Y P++ V SAT+ + ++ + +
Sbjct: 195 --------------------SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 234
Query: 290 HLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRL 349
P+ + + L + Y + + K L L ++L + ++F V + ++
Sbjct: 235 SKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIF---VNTRRKV 291
Query: 350 CKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVI 409
L + + G Q R + FR G +VL+++D + RG+DV+ V VI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351
Query: 410 NYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSL 469
N+D+P + Y+HR GR+ R G+ G ++ D+ R + QK EE LPS++
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDI-QKFYNVVVEE--LPSNV 408
Query: 470 IDAL 473
D L
Sbjct: 409 ADLL 412
>AT3G02065.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:359628-360734
FORWARD LENGTH=368
Length = 368
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/414 (23%), Positives = 176/414 (42%), Gaps = 83/414 (20%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRVA-------KCLRALVVVPTRDLAFQVKRVFD 122
+ L ++ TGSGKT ++ +PI+ +T + + A+V+ PTR+L QV+
Sbjct: 11 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 70
Query: 123 GVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPG 182
+ L + L VG DP R + V++++ TPG
Sbjct: 71 MLGKGLPFKTALVVGG----------------------DPMSGQLYRIQQGVELIIGTPG 108
Query: 183 RLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFP 242
R++D + + L+++ V+DE D +L+ ++ + + + + SQP F
Sbjct: 109 RVVDLL-SKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQ-------ALSQPQVLLFS 160
Query: 243 CSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRY 302
++ R + G LAK ++ +I +P K + L +++ A Q +
Sbjct: 161 ATIS--REVEKVG----------GSLAKEIILVSIG-NPNKPNKAVNQLAIWVDAKQKKQ 207
Query: 303 RLPENLESYKLICETKVKPLYLVALLKSLGGE---KCIVFTKSVE--STHRLCKLLNCFE 357
+L + L S + KP +V + +G + I V+ S H
Sbjct: 208 KLFDILRS-----QNHFKPPAVVYVSSRVGADLLANAITVVTGVKALSIHG--------- 253
Query: 358 DLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYI 417
+ MKE R + +F GE VLVS+ + RG+D+ VR VI +DMP I
Sbjct: 254 --EKPMKE---------RRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTI 302
Query: 418 KTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSLID 471
K Y+H GR +R G+ G +++D+ F L+ ++ +P LI+
Sbjct: 303 KEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAA---IPKELIN 353
>AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=542
Length = 542
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 167/404 (41%), Gaps = 83/404 (20%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQ-------MLSTRVAKCLRALVVVPTRDLAFQVKRVFD 122
RD+ + TGSGKTL + LP++ M+ + ALV+ P+R+LA Q V +
Sbjct: 135 RDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVE 194
Query: 123 GVASPL------GLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDI 176
+ L LR L +G + ++ + + V I
Sbjct: 195 QFVASLVEDGYPRLRSLLCIGGVDMRSQLDVV----------------------KKGVHI 232
Query: 177 LVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQP 236
+VATPGRL D I K +L+ L +DE DRL+ ++ + V + +S +
Sbjct: 233 VVATPGRLKD-ILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFS 291
Query: 237 ADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLR 296
A P + T L +T + G+ NL +
Sbjct: 292 AT--MPAKIQIFATS--------------------ALVKPVTVNVGRAGAANLDV----- 324
Query: 297 AGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCF 356
++ Y E Y L C K P L+ V+ H LL
Sbjct: 325 IQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENK----------ADVDDIHEYL-LLKGV 373
Query: 357 EDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKY 416
E + I G + Q R ++ F+ G+ VLV++D ++G+D +++VINYDMP
Sbjct: 374 EAVAI-----HGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGE 428
Query: 417 IKTYVHRAGRTARAGQTGRCFTLMSKDE----VRRFKKLMQKAE 456
I+ YVHR GRT R G+TG T ++K++ + K L+Q+A+
Sbjct: 429 IENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAK 472
>AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794540-2797548 FORWARD LENGTH=563
Length = 563
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 177/429 (41%), Gaps = 83/429 (19%)
Query: 29 LDSIPLLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYAL 88
D PL LK +E G ++ VQ A + +D+ + TG+GKT+A+ L
Sbjct: 82 FDQFPLSPLTLK-GIEDAGFKTMTVVQEATLPLILQ----GKDILAKAKTGTGKTVAFLL 136
Query: 89 PIVQML-----STRVAK--CLRALVVVPTRDLAFQVK---RVFDGVASPLGLRVGLAVGQ 138
P ++ + ++R + + LVV PTR+LA Q + +G++V +G
Sbjct: 137 PSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQV--VIGG 194
Query: 139 SSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFT--L 196
+ + E L P + ILVATPGRL DHI+ T GF L
Sbjct: 195 TKLPTEQRRLQKSPCQ---------------------ILVATPGRLKDHIDNTSGFATRL 233
Query: 197 EHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSF---SQPADSFFP-CSVGALRTRR 252
+ LV+DE D LL ++ + ++ +F + +D C V R
Sbjct: 234 MGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHE 293
Query: 253 RCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYK 312
+ + + ++++M + A+ L+ H L G ++ + +N+
Sbjct: 294 FVNCVQEGAGETHQKVSQMYMIAS----------LDRHFSLLY--GLLKKHITDNV---- 337
Query: 313 LICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQ 372
G K I+F + T + LL L ++++E + Q
Sbjct: 338 --------------------GYKVIIFCTTAMVTRLVADLLG---KLSLNVREIHSRKPQ 374
Query: 373 CVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQ 432
R++ FRK + +LV+SD RG+D V V+ +P + Y+HR GRT R G+
Sbjct: 375 SYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGK 434
Query: 433 TGRCFTLMS 441
G L++
Sbjct: 435 EGEGVLLLA 443
>AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:4351888-4353543 FORWARD LENGTH=551
Length = 551
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 174/414 (42%), Gaps = 73/414 (17%)
Query: 71 DLCVNSPTGSGKTLAYALPIVQMLSTRVAKC------------LRALVVVPTRDLAFQVK 118
D + S TGSGKTLAY LPI+ + K ++A++V P+R+L Q+
Sbjct: 149 DAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIV 208
Query: 119 RVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILV 178
R + + P+ R+ + +LV R + AL ++K I+V
Sbjct: 209 REVEKLLGPVHRRM------------VQQLVGGANR-----MRQEEALK---KNKPAIVV 248
Query: 179 ATPGRLMDHINTTKGFTLEHLH---YLVVDETDRLLREAYQSWLPTVLELA--------- 226
TPGR+ + +KG L H H +LV+DE D LL ++ + +LE
Sbjct: 249 GTPGRIAE---ISKGGKL-HTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPK 304
Query: 227 -----QSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPY----PRLAKMVLSATI 277
++N + A F A + + K P P M L+ T
Sbjct: 305 GEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTT 364
Query: 278 TQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCI 337
++ G+ +Q + LP L+ Y I + + K L + +L + I
Sbjct: 365 SEADGQ-IQTTIQ------------SLPPALKHYYCISKHQHKVDTLRRCVHALDAQSVI 411
Query: 338 VFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMT 397
F + + +L ++ E ++ E G + RS L F+ GE +VLV+++
Sbjct: 412 AF---MNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSA 468
Query: 398 RGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKL 451
RG+DV V+N ++P Y HRAGRT R G+ G T+ + +V KK+
Sbjct: 469 RGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKM 522
>AT3G01540.4 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 333 GEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVS 392
G K I+F ST R+C L Q G + Q R L FR G VLV+
Sbjct: 403 GSKVIIFC----STKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVA 458
Query: 393 SDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLM 452
+D RG+DV+ +R V+NYD P ++ YVHR GRT RAG TG+ FT + + L+
Sbjct: 459 TDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLI 518
Query: 453 QKAEAGSCEEHILPSSLIDALHTTYQSALEKF 484
+ E + + P I + T + KF
Sbjct: 519 KILEG--ANQRVPPQ--IREMATRGGGGMNKF 546
>AT3G01540.3 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 333 GEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVS 392
G K I+F ST R+C L Q G + Q R L FR G VLV+
Sbjct: 403 GSKVIIFC----STKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVA 458
Query: 393 SDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLM 452
+D RG+DV+ +R V+NYD P ++ YVHR GRT RAG TG+ FT + + L+
Sbjct: 459 TDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLI 518
Query: 453 QKAEAGSCEEHILPSSLIDALHTTYQSALEKF 484
+ E + + P I + T + KF
Sbjct: 519 KILEG--ANQRVPPQ--IREMATRGGGGMNKF 546
>AT3G01540.2 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=619
Length = 619
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 333 GEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVS 392
G K I+F ST R+C L Q G + Q R L FR G VLV+
Sbjct: 403 GSKVIIFC----STKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVA 458
Query: 393 SDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLM 452
+D RG+DV+ +R V+NYD P ++ YVHR GRT RAG TG+ FT + + L+
Sbjct: 459 TDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLI 518
Query: 453 QKAEAGSCEEHILPSSLIDALHTTYQSALEKF 484
+ E + + P I + T + KF
Sbjct: 519 KILEG--ANQRVPPQ--IREMATRGGGGMNKF 546
>AT3G01540.1 | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 |
chr3:213077-216142 REVERSE LENGTH=618
Length = 618
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 333 GEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVS 392
G K I+F ST R+C L Q G + Q R L FR G VLV+
Sbjct: 403 GSKVIIFC----STKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVA 458
Query: 393 SDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLM 452
+D RG+DV+ +R V+NYD P ++ YVHR GRT RAG TG+ FT + + L+
Sbjct: 459 TDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLI 518
Query: 453 QKAEAGSCEEHILPSSLIDALHTTYQSALEKF 484
+ E + + P I + T + KF
Sbjct: 519 KILEG--ANQRVPPQ--IREMATRGGGGMNKF 546
>AT5G11170.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3553334-3556646 FORWARD LENGTH=427
Length = 427
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 181/412 (43%), Gaps = 74/412 (17%)
Query: 34 LLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQM 93
LL P+L A+ + S F V E + D+ + +G GKT + L +Q
Sbjct: 52 LLKPELLRAI----VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 94 LSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPL-GLRVGLAVGQSSVADEISELVHVP 152
+ + + ALV+ TR+LA+Q+ F ++ L +V + G ++
Sbjct: 108 IEPSPGQ-VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIK---------- 156
Query: 153 AREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLR 212
H ++ E I+V TPGR++ + K +L+++ + ++DE D++L
Sbjct: 157 ----------IHKDLLKNECP-HIVVGTPGRVL-ALAREKDLSLKNVRHFILDECDKMLE 204
Query: 213 EAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMV 272
+L RR V+ FK P+ + M+
Sbjct: 205 ----------------------------------SLDMRR--DVQEIFKMTPHDKQV-MM 227
Query: 273 LSATITQDPGKLVQLNLHLPLFLRAG-QMRYRLPENLESYKLICETKVKPLYLVALLKSL 331
SAT++++ + + + P+ + + + L ++ Y + E + K L LL +L
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KNRKLNDLLDAL 286
Query: 332 GGEKCIVFTKSVESTHRLCKLL-NC-FEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQV 389
+ ++F KSV L KLL C F + I +SG+ + R +F++G ++
Sbjct: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICI----HSGMSQE-ERLTRYKSFKEGHKRI 341
Query: 390 LVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
LV++D + RG+D+E V VINYDMP TY+HR GR R G G T ++
Sbjct: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVA 393
>AT5G11200.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=427
Length = 427
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 181/412 (43%), Gaps = 74/412 (17%)
Query: 34 LLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQM 93
LL P+L A+ + S F V E + D+ + +G GKT + L +Q
Sbjct: 52 LLKPELLRAI----VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 94 LSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPL-GLRVGLAVGQSSVADEISELVHVP 152
+ + + ALV+ TR+LA+Q+ F ++ L +V + G ++
Sbjct: 108 IEPSPGQ-VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIK---------- 156
Query: 153 AREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLR 212
H ++ E I+V TPGR++ + K +L+++ + ++DE D++L
Sbjct: 157 ----------IHKDLLKNECP-HIVVGTPGRVL-ALAREKDLSLKNVRHFILDECDKMLE 204
Query: 213 EAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMV 272
+L RR V+ FK P+ + M+
Sbjct: 205 ----------------------------------SLDMRR--DVQEIFKMTPHDKQV-MM 227
Query: 273 LSATITQDPGKLVQLNLHLPLFLRAG-QMRYRLPENLESYKLICETKVKPLYLVALLKSL 331
SAT++++ + + + P+ + + + L ++ Y + E + K L LL +L
Sbjct: 228 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEME-KNRKLNDLLDAL 286
Query: 332 GGEKCIVFTKSVESTHRLCKLL-NC-FEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQV 389
+ ++F KSV L KLL C F + I +SG+ + R +F++G ++
Sbjct: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICI----HSGMSQE-ERLTRYKSFKEGHKRI 341
Query: 390 LVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
LV++D + RG+D+E V VINYDMP TY+HR GR R G G T ++
Sbjct: 342 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVA 393
>AT3G53110.1 | Symbols: LOS4 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr3:19687968-19690423 FORWARD LENGTH=496
Length = 496
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 165/401 (41%), Gaps = 81/401 (20%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLR---ALVVVPTRDLAFQVKRVFDGVAS 126
+ L + GSGKT + L MLS RV LR AL + PTR+LA Q V +
Sbjct: 132 KHLIAQAHNGSGKTTCFVL---GMLS-RVDPTLREPQALCICPTRELANQNMEVLQKMGK 187
Query: 127 PLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMD 186
G+ LAV S+ PA G+ P A +++ TPG L
Sbjct: 188 FTGITAELAVPDSTRG--------APAATRGA---PVSA---------HVVIGTPGTLKK 227
Query: 187 HINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVG 246
+ K L HL LV DE D +L D F S+
Sbjct: 228 WM-AFKRLGLNHLKILVFDEADHML------------------------ATDGFRDDSLK 262
Query: 247 ALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLP--LFLRAGQMRYRL 304
++ R P ++ SAT + V + P LF++ +
Sbjct: 263 IMKDIGRVN----------PNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLAL-- 310
Query: 305 PENLESYKLICETKVKPLYLVA-LLKSLGG-EKCIVFTKSVESTHRLCKLLNCFEDLQID 362
++++ YK++C + + ++ + LG + I+F K+ S ++ K L ++ D
Sbjct: 311 -DSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKAL---AEMGYD 366
Query: 363 MKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKT--- 419
+ G + R K + F++ QVL+++D + RG D + V V+NY++P +T
Sbjct: 367 VTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEP 426
Query: 420 ----YVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAE 456
Y+HR GR R G+ G F L+ D K++M+K E
Sbjct: 427 DYEVYLHRVGRAGRFGRKGAVFNLLLDDGWD--KEVMEKIE 465
>AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476402
REVERSE LENGTH=788
Length = 788
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 158/390 (40%), Gaps = 82/390 (21%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRVAKC-------LRALVVVPTRDLAFQVKRVFD 122
+D+ + TG+GKT+A+ LP ++++ + ALV+ PTR+LA Q +
Sbjct: 358 KDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEAN 417
Query: 123 GVAS---PLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVA 179
+ +G++V +G + + E + P + ILVA
Sbjct: 418 TLLKYHPSIGVQV--VIGGTRLGLEQKRMQTNPCQ---------------------ILVA 454
Query: 180 TPGRLMDHINTTKGFT--LEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSF---- 233
TPGRL DHI T GF L+ + LV+DE D LL ++ + ++ +F
Sbjct: 455 TPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSA 514
Query: 234 SQPADSFFPCSVGALRTRR--RCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHL 291
+ P + C V R C E + R M+ S L+ H
Sbjct: 515 TVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIAS------------LDRHF 562
Query: 292 PLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCK 351
L Y L+ E + + K IVF + T +
Sbjct: 563 SLL----------------YTLLREHIMGNVDY----------KVIVFCTTAMVTKLVAD 596
Query: 352 LLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINY 411
LL +L ++++E + Q R++ FRK + +LV+SD RG+D V V+
Sbjct: 597 LLG---ELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQV 653
Query: 412 DMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
+PK + Y+HR GRT R G+ G L++
Sbjct: 654 GLPKDREQYIHRLGRTGRKGKEGEGILLLA 683
>AT5G11170.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3554272-3556646 FORWARD LENGTH=344
Length = 344
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 168/375 (44%), Gaps = 70/375 (18%)
Query: 71 DLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPL-G 129
D+ + +G GKT + L +Q + + + ALV+ TR+LA+Q+ F ++ L
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQ-VSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 130 LRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHIN 189
+V + G ++ H ++ E I+V TPGR++ +
Sbjct: 61 TKVSVFYGGVNIK--------------------IHKDLLKNECP-HIVVGTPGRVL-ALA 98
Query: 190 TTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALR 249
K +L+++ + ++DE D++L +L
Sbjct: 99 REKDLSLKNVRHFILDECDKMLE----------------------------------SLD 124
Query: 250 TRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAG-QMRYRLPENL 308
RR V+ FK P+ + M+ SAT++++ + + + P+ + + + L +
Sbjct: 125 MRR--DVQEIFKMTPHDKQV-MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 181
Query: 309 ESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLL-NC-FEDLQIDMKEY 366
+ Y + E + K L LL +L + ++F KSV L KLL C F + I +
Sbjct: 182 QHYIKLSEME-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICI----H 236
Query: 367 SGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGR 426
SG+ + R +F++G ++LV++D + RG+D+E V VINYDMP TY+HR GR
Sbjct: 237 SGMSQE-ERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 295
Query: 427 TARAGQTGRCFTLMS 441
R G G T ++
Sbjct: 296 AGRFGTKGLAITFVA 310
>AT1G51380.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:19047960-19049967 FORWARD LENGTH=392
Length = 392
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 154/382 (40%), Gaps = 65/382 (17%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLG 129
RD+ + +G+GKT A+ + Q+++ K ++ LV+ P+R+LA Q ++ + +
Sbjct: 60 RDVIAQAQSGTGKTSMIAISVCQIVNISSRK-VQVLVLSPSRELASQTEKTIQAIGAHTN 118
Query: 130 LRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHIN 189
++ +G S+ ++I +L E V + TPGR+ D I
Sbjct: 119 IQAHACIGGKSIGEDIKKL----------------------ERGVHAVSGTPGRVYDMIK 156
Query: 190 TTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALR 249
+ + LV+DE+D +L + + + V + P D C + A
Sbjct: 157 RG-SLQTKAVKLLVLDESDEMLSKGLKDQIYDVYR---------ALPHD-IQVCLISATL 205
Query: 250 TRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLE 309
+ + F P L K P +L G +Y + + E
Sbjct: 206 PQEILEMTEKFMTDPVRILVK----------PDELT----------LEGIKQYYVDVDKE 245
Query: 310 SYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGL 369
+K L L L + I+F + + L + + + M G
Sbjct: 246 EWKFDT--------LCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSM---HGD 294
Query: 370 QHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTAR 429
+ Q R + FR + +VL++SD RG+DV+ V +VINYD+P + Y+HR GR R
Sbjct: 295 KRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGR 354
Query: 430 AGQTGRCFTLMSKDEVRRFKKL 451
G+ G + +++ K +
Sbjct: 355 FGREGVAINFVKSSDMKDLKDI 376
>AT5G11200.3 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=468
Length = 468
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 178/430 (41%), Gaps = 69/430 (16%)
Query: 34 LLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQM 93
LL P+L A+ G VQ E + D+ + +G GKT + L +Q
Sbjct: 52 LLKPELLRAIVDSGFEHPSEVQ----HECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 94 LSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPL-GLRVGLAVGQSSVADEISELVHVP 152
+ + + ALV+ TR+LA+Q+ F ++ L +V + G ++
Sbjct: 108 IEPSPGQ-VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIK---------- 156
Query: 153 AREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLR 212
H ++ E I+V TPGR++ + K +L+++ + ++DE D++L
Sbjct: 157 ----------IHKDLLKNECP-HIVVGTPGRVL-ALAREKDLSLKNVRHFILDECDKMLE 204
Query: 213 EAYQSWLPTVLELAQSNDDSFSQ-PADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKM 271
L++ + + F P D L R ++ +D
Sbjct: 205 S---------LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDGLRTLSGDS 255
Query: 272 VLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLY-------- 323
V + G V P F RA +M +P N++ ++ + + K
Sbjct: 256 VALWWVGFGSGYCV-----FPRFHRA-RMGLNVPSNIDPMEIYVDDEAKLTLHGLVQHYI 309
Query: 324 ----------LVALLKSLGGEKCIVFTKSVESTHRLCKLL-NC-FEDLQIDMKEYSGLQH 371
L LL +L + ++F KSV L KLL C F + I +SG+
Sbjct: 310 KLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICI----HSGMSQ 365
Query: 372 QCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAG 431
+ R +F++G ++LV++D + RG+D+E V VINYDMP TY+HR GR R G
Sbjct: 366 E-ERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 424
Query: 432 QTGRCFTLMS 441
G T ++
Sbjct: 425 TKGLAITFVA 434
>AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790341-2794059
FORWARD LENGTH=850
Length = 850
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 180/429 (41%), Gaps = 83/429 (19%)
Query: 29 LDSIPLLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYAL 88
D PL LK A++ G ++ VQ A + +D+ + TG+GKT+A+ L
Sbjct: 384 FDQFPLSPLSLK-AIKDAGFETMTVVQEATLPIILQ----GKDVLAKAKTGTGKTVAFLL 438
Query: 89 PIVQML-----STRVAKC--LRALVVVPTRDLAFQVKRVFDGVAS---PLGLRVGLAVGQ 138
P ++ + ++R ++ + LVV PTR+LA Q + + +G++V +G
Sbjct: 439 PAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQV--VIGG 496
Query: 139 SSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFT--L 196
+ + E + P + ILVATPGRL DHI T GF L
Sbjct: 497 TKLPTEQRRMQTNPCQ---------------------ILVATPGRLKDHIENTSGFATRL 535
Query: 197 EHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSF----SQPADSFFPCSVGALRTRR 252
+ LV+DE D LL ++ + ++ +F + P + C V R
Sbjct: 536 MGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHE 595
Query: 253 RCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYK 312
+ + + ++ +M + A+ L+ H L ++ + +N++ YK
Sbjct: 596 FINCVQEGSGETHQKVTQMYMIAS----------LDRHFSLLHVL--LKEHIADNVD-YK 642
Query: 313 LICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQ 372
+I +F + T + LL+ L ++++E + Q
Sbjct: 643 VI-----------------------IFCTTAMVTRLVADLLS---QLSLNVREIHSRKPQ 676
Query: 373 CVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQ 432
R++ FRK + +LV+SD RG+D V V+ +P + Y+HR GRT R G+
Sbjct: 677 SYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGK 736
Query: 433 TGRCFTLMS 441
G L++
Sbjct: 737 EGEGVLLLA 745
>AT5G19210.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6461444-6463687
FORWARD LENGTH=472
Length = 472
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 120/440 (27%), Positives = 196/440 (44%), Gaps = 75/440 (17%)
Query: 43 LESMGISSLFPVQLAVWQETVGPGNFD-RDLCVNSPTGSGKTLAYALPIVQMLSTRVAKC 101
+E +G +FP + Q P F RD +++ TGSGKTL Y L I +++ + +
Sbjct: 91 MEEIGF--VFPTDI---QREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS- 144
Query: 102 LRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYD 161
++A++VVPTR+L QV +V A L + + V +V + + G+
Sbjct: 145 VQAVIVVPTRELGMQVTKV----ARMLAAKSEIDVKGCTV---------MALLDGGTLR- 190
Query: 162 PQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPT 221
+H +++ E ILVAT L H+ F ++ + LVVDE D L + Q
Sbjct: 191 -RHKSWLKAEPPA-ILVATVASLC-HMLEKHIFRIDSVRVLVVDEVDFLFYSSKQV---- 243
Query: 222 VLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDP 281
S + SF C +R V F P+ K + I Q
Sbjct: 244 ---------GSVRKLLTSFSSCD-------KRQTV---FASASIPQ-HKHFVHDCIQQKW 283
Query: 282 GKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFT- 340
K +++H+ + +P L ++CE K L+ALL+S E I+F
Sbjct: 284 TKRDVVHVHVSAIMP-------MPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIFVG 336
Query: 341 ----KSVE-----STHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLV 391
KS + ST L + L +++ G + R+ +LT R+G +LV
Sbjct: 337 EQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLV 396
Query: 392 SSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGR-CF--TLMSKDEVRRF 448
S+D RG+D+ ++ N+D+P+ + Y+HRAGR R + R C L++ +E RF
Sbjct: 397 STDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEE--RF 454
Query: 449 KKLMQKAEAG---SCEEHIL 465
++Q+ E SCEE +L
Sbjct: 455 --VLQRYENELMFSCEEMML 472
>AT1G63250.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:23463284-23466451 REVERSE LENGTH=798
Length = 798
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 122/456 (26%), Positives = 188/456 (41%), Gaps = 119/456 (26%)
Query: 25 QQLPLDSI--------PLLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNS 76
+Q P DSI + P AL + GI + VQ A E + +D V +
Sbjct: 317 KQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLD----GKDALVKA 372
Query: 77 PTGSGKTLAYALPIVQML---------STRVAKCLRALVVVPTRDLAFQVKRVFDGVASP 127
TG+GK++A+ LP ++ + +VA AL++ PTR+LA Q+ +G A
Sbjct: 373 KTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIF-ALILCPTRELASQI--AAEGKAL- 428
Query: 128 LGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESK-VDILVATPGRLMD 186
L G+ V Q+ + +L D Q R ES+ IL+ATPGRL+D
Sbjct: 429 LKFHDGIGV-QTLIGGTRFKL------------DQQ-----RLESEPCQILIATPGRLLD 470
Query: 187 HINTTKGFT--LEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCS 244
HI G T L L +VDE D LL D F + + C
Sbjct: 471 HIENKSGLTSRLMALKLFIVDEADLLL------------------DLGFRRDVEKIIDC- 511
Query: 245 VGALRTRRRCGVERGFKDKPYPRLAK-MVLSATITQDPGKLVQLNLHLPLFLRAGQMRYR 303
PR + ++ SATI ++ ++ QL L R
Sbjct: 512 --------------------LPRQRQSLLFSATIPKEVRRVSQLVLK------------R 539
Query: 304 LPENLESYKLIC-ET--KVKPLYLVA-----------LLK----SLGGEKCIVFTKSVES 345
+++ L C ET KV+ +VA LLK + K IVF +
Sbjct: 540 DHSYIDTIGLGCVETHDKVRQSCIVAPHESHFHLVPHLLKEHINNTPDYKIIVFCSTGMV 599
Query: 346 THRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGV 405
T + LL +++++++E + Q R++ F++ +LV+SD RGM+ V
Sbjct: 600 TSLMYTLL---REMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDV 656
Query: 406 RNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
VI +P + Y+HR GRT R G+ G L++
Sbjct: 657 TLVIQVGIPSDREQYIHRLGRTGREGKGGEGLLLIA 692
>AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631661-16634834
FORWARD LENGTH=626
Length = 626
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 118/440 (26%), Positives = 182/440 (41%), Gaps = 130/440 (29%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQML--STRVAK---CLRALVVVPTRDLAFQVKRVFDGV 124
+D+ + TGSGKTLAY LP++Q L + V+K A ++VP+R+L QV + V
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV---YTEV 140
Query: 125 ASPLGL-RVGLAVGQ----SSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVA 179
+S + L RV L Q S +D + L +P +ILV+
Sbjct: 141 SSLIELCRVQLKAVQLTSSMSASDMRNALAGLP----------------------EILVS 178
Query: 180 TPGRLMDHINTTKGFTL---------EHLHYLVVDETDRLLREAYQSWLPTVLELAQSND 230
TP + K F E L LV+DE D LL Y+ L +V
Sbjct: 179 TPACI------PKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSVT------- 225
Query: 231 DSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLH 290
S P RRC +++SAT + D KL +L LH
Sbjct: 226 --------SIIP---------RRCQC--------------LLMSATTSSDVEKLKKLILH 254
Query: 291 LPLFLRAGQMRYR---LPENLESYKLICETKVKPLYLVALLK-SLGGEKCIVFTKSVEST 346
P+ L + + +P N++ + + C + K L+++ALLK + +K ++F +++
Sbjct: 255 NPIVLTLTEDNDKEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQKKILIFINTIDMG 314
Query: 347 HRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSD------------ 394
RL L F I +G Q R L F G F L+++D
Sbjct: 315 FRLKLFLEKF---GIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEA 371
Query: 395 -----------------------AMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAG 431
+ RG+D + V VIN+DMP+ + Y+HR GRT RA
Sbjct: 372 KGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAY 431
Query: 432 QTGRCFTLMSKDEVRRFKKL 451
+G +L+S DE+ F+ +
Sbjct: 432 SSGSSVSLISPDEMEGFEDI 451
>AT2G07750.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr2:3576483-3580396 FORWARD LENGTH=845
Length = 845
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 117/458 (25%), Positives = 186/458 (40%), Gaps = 123/458 (26%)
Query: 25 QQLPLDSI--------PLLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNS 76
+Q P DSI + P AL + GI + VQ A E + +D V +
Sbjct: 364 KQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLD----GKDALVKA 419
Query: 77 PTGSGKTLAYALPIVQML---------STRVAKCLRALVVVPTRDLAFQVKRVFDGVASP 127
TG+GK++A+ LP ++ + +VA L++ PTR+LA Q+
Sbjct: 420 KTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIF-VLILCPTRELASQIA--------- 469
Query: 128 LGLRVGLAVGQSSVADEISELVHVPAREAGSCY--DPQHALFVRFESK-VDILVATPGRL 184
A G++ + + + + V G+ + D Q R ES+ IL+ATPGRL
Sbjct: 470 -------AEGKALLKNH--DGIGVQTLIGGTRFRLDQQ-----RLESEPCQILIATPGRL 515
Query: 185 MDHINTTKGFT--LEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFP 242
+DHI G T L L +VDE D LL D F + +
Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEADLLL------------------DLGFKRDVEKIID 557
Query: 243 CSVGALRTRRRCGVERGFKDKPYPRLAK-MVLSATITQDPGKLVQLNLHLPLFLRAGQMR 301
C PR + ++ SATI ++ ++ QL L
Sbjct: 558 C---------------------LPRQRQSLLFSATIPKEVRRVSQLVLK----------- 585
Query: 302 YRLPENLESYKLIC---ETKVKPLYLVA-----------LLK----SLGGEKCIVFTKSV 343
R +++ L C KVK +VA LLK ++ K IVF +
Sbjct: 586 -RDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYKIIVFCSTG 644
Query: 344 ESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVE 403
T + LL +++++++E + Q R+ F++ +LV+SD RGM+
Sbjct: 645 MVTSLMYTLL---REMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYP 701
Query: 404 GVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
V VI +P + Y+HR GRT R G+ G+ L++
Sbjct: 702 DVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIA 739
>AT5G11200.2 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr5:3567389-3570686 FORWARD LENGTH=486
Length = 486
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 327 LLKSLGGEKCIVFTKSVESTHRLCKLL-NC-FEDLQIDMKEYSGLQHQCVRSKTLTAFRK 384
LL +L + ++F KSV L KLL C F + I +SG+ + R +F++
Sbjct: 341 LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICI----HSGMSQE-ERLTRYKSFKE 395
Query: 385 GEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMS 441
G ++LV++D + RG+D+E V VINYDMP TY+HR GR R G G T ++
Sbjct: 396 GHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVA 452
>AT5G63120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25319798-25322071
REVERSE LENGTH=484
Length = 484
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 157/372 (42%), Gaps = 77/372 (20%)
Query: 42 ALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLST--RVA 99
A+ +G + P+Q W + RDL + TGSGKTLAY LP + +S R+
Sbjct: 179 AIAKLGFTEPTPIQAQGWPMALK----GRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 100 KCLRALVVV--PTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAG 157
+ +V++ PTR+LA Q++ + GLR G+ S ++ G
Sbjct: 235 QDDGPIVLILAPTRELAVQIQE----ESRKFGLRSGVR----------STCIY-----GG 275
Query: 158 SCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQS 217
+ PQ R V+I++ATPGRL+D + + L+ + YLV+DE DR+L ++
Sbjct: 276 APKGPQIRDLRR---GVEIVIATPGRLIDMLE-CQHTNLKRVTYLVLDEADRMLDMGFE- 330
Query: 218 WLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATI 277
P + ++ V +R R+ ++ SAT
Sbjct: 331 --PQIRKI-------------------VSQIRPDRQT----------------LLWSATW 353
Query: 278 TQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSL-GGEKC 336
++ L + L P G + +++ I T K L+ LLK L G K
Sbjct: 354 PREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKI 413
Query: 337 IVFTKSVESTHRLCKLL--NCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSD 394
++F ++ ++ + L + + L I G + Q R + L F+ G ++ ++D
Sbjct: 414 LIFVETKRGCDQVTRQLRMDGWPALAI-----HGDKTQSERDRVLAEFKSGRSPIMTATD 468
Query: 395 AMTRGMDVEGVR 406
RG+ G+R
Sbjct: 469 VAARGLVSSGIR 480
>AT3G06980.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr3:2201531-2204662 FORWARD LENGTH=781
Length = 781
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 102/415 (24%), Positives = 167/415 (40%), Gaps = 101/415 (24%)
Query: 78 TGSGKTLAYALPIVQML--------STRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLG 129
+GSGKTLAY +P++Q L S C R +V+VPT +LA QV
Sbjct: 420 SGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV------------ 467
Query: 130 LRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHIN 189
L ++ +S V S +V R Q E VD+L+ATPGR +N
Sbjct: 468 LANCRSISKSGVPFR-SMVVTGGFR--------QRTQLENLEQGVDVLIATPGRFTYLMN 518
Query: 190 TTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALR 249
L +L ++DE D L DD F + S
Sbjct: 519 EGI-LGLSNLRCAILDEVDILF-----------------GDDEFEAALQNLINSS----- 555
Query: 250 TRRRCGVERGFKDKPYPRLAK-MVLSATITQDP-GKLVQLNLHLPLFLRAGQMRYRLPEN 307
P A+ + ++AT+ + KLV++ + + G +R+
Sbjct: 556 ----------------PVTAQYLFVTATLPLEIYNKLVEVFPDCEVVM--GPRVHRVSNA 597
Query: 308 LESYKLIC----------ET--KVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNC 355
LE + + C ET + K L+ +++ K I+F +E+ K+ N
Sbjct: 598 LEEFLVDCSGDDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCR---KVENI 654
Query: 356 FEDLQIDMKE-------YSGLQHQCVRSKTLTAFRKGEFQ----VLVSSDAMTRGMDVEG 404
F+ ++D KE + Q R + F + + LV +D +RG+D G
Sbjct: 655 FK--RVDRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSG 712
Query: 405 VRNVINYDMPKYIKTYVHRAGRTARAGQ-TGRCFTLMSKDEVRRFKKLMQKAEAG 458
V +V+ +D P+ YV R GRTAR + G+ F + +V ++++++ E G
Sbjct: 713 VDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIFVVGKQVGLARRIIERNEKG 767
>AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=989
Length = 989
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 374 VRS--KTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAG 431
VRS K+++ F+ +L+++ RG+DV+ + V+N+D P + + YVHR GRT RAG
Sbjct: 650 VRSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAG 709
Query: 432 QTGRCFTLMSKDEVRRFKKLMQKAE 456
+ G T +S+D+ + L++ E
Sbjct: 710 RKGCAVTFISEDDAKYAPDLVKALE 734
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 31/165 (18%)
Query: 70 RDLCVNSPTGSGKTLAYALPIVQMLSTR----VAKCLRALVVVPTRDLAFQVKRVFDGVA 125
RD + TGSGKTL + LP+++ + + LV+ PTR+L Q+ +
Sbjct: 434 RDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFS 493
Query: 126 SPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLM 185
LG+ G S VA +ISEL + +I+V TPGR++
Sbjct: 494 KALGIICVPVYGGSGVAQQISEL----------------------KRGTEIVVCTPGRMI 531
Query: 186 DHINTTKG--FTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQS 228
D + T+ G L + YLV+DE DR+ ++ P + + Q+
Sbjct: 532 DILCTSSGKITNLRRVTYLVMDEADRMFDMGFE---PQITRIVQN 573
>AT5G19210.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:6462100-6463687
FORWARD LENGTH=315
Length = 315
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 20/169 (11%)
Query: 313 LICETKVKPLYLVALLKSLGGEKCIVFT-----KSVE-----STHRLCKLLNCFEDLQID 362
++CE K L+ALL+S E I+F KS + ST L + L ++
Sbjct: 151 VMCEKTNKHQVLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLE 210
Query: 363 MKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVH 422
+ G + R+ +LT R+G +LVS+D RG+D+ ++ N+D+P+ + Y+H
Sbjct: 211 ILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 270
Query: 423 RAGRTARAGQTGR-CF--TLMSKDEVRRFKKLMQKAEAG---SCEEHIL 465
RAGR R + R C L++ +E RF ++Q+ E SCEE +L
Sbjct: 271 RAGRAGRKPFSDRKCIVANLITSEE--RF--VLQRYENELMFSCEEMML 315
>AT1G59990.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr1:22090369-22092885 REVERSE LENGTH=581
Length = 581
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 334 EKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSS 393
E+ +VF +VE+ + +L E I Y R+ L FR+ V V +
Sbjct: 425 ERTMVFANTVEAVEAVADIL---EKASIQCYRYHKNHKLDERANILADFRETG-GVFVCT 480
Query: 394 DAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSK 442
DA RG+DV V +VI D ++HR GRTARAGQ G +L ++
Sbjct: 481 DAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTE 529
>AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 |
chr3:1698180-1701228 FORWARD LENGTH=606
Length = 606
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 6/202 (2%)
Query: 257 ERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHLPLFLRAGQMRYRLPENLESYKLICE 316
E G + +PR+ M L+AT T+ + V +L +P RA ++ Y++I +
Sbjct: 353 ELGCLKQNFPRVPVMALTATATESVCQDVLKSLRIP---RAPVLKMSFDRINLKYEVIVK 409
Query: 317 TKVKPLYLVALLKS-LGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVR 375
TK L LL+ + IV+ S + K LN E ++ Y R
Sbjct: 410 TKEPLKQLQELLRDRFKDQSGIVYCLSKSECVDVAKFLN--EKCKVKTVYYHAGVPAKQR 467
Query: 376 SKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGR 435
++ GE +++ ++ A G+D VR VI+ + K +++Y +GR R G +
Sbjct: 468 VDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQ 527
Query: 436 CFTLMSKDEVRRFKKLMQKAEA 457
C L K + R +++ +
Sbjct: 528 CICLYQKKDFSRVVCMLRNGQG 549