Miyakogusa Predicted Gene

Lj4g3v2371680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2371680.1 tr|F2E5J9|F2E5J9_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,64.71,4e-18,DUF588,Uncharacterised protein family UPF0497,
trans-membrane plant; seg,NULL; A_tha_TIGR01569: plan,CUFF.50845.1
         (190 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06390.1 | Symbols:  | Uncharacterised protein family (UPF049...   115   2e-26
AT4G15610.1 | Symbols:  | Uncharacterised protein family (UPF049...    90   8e-19

>AT3G06390.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr3:1938913-1939707 REVERSE LENGTH=199
          Length = 199

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 1   MASRDKTEDPEHR------LSSTPIPAPAAG-VDYFHFDLILRXXXXXXXXXXXXXMVTS 53
           MAS +   DPE         S+TP P+ AA  +D    D+I R             MVTS
Sbjct: 1   MASTEN-PDPETGKSEPIPASATPPPSSAASFLDCRKIDIITRVLLFSATLTALIVMVTS 59

Query: 54  NQTEYV-------PLPRPAKFRYSPAFIYFVAAFSVSGLYSILTALASLSVIRKPALKTK 106
           +QTE         P P  A+F  SPAFIYFV A  V+  Y++++ L S+S++ KP    +
Sbjct: 60  DQTEMTQLPGVSSPAPVSAEFNDSPAFIYFVVALVVASFYALISTLVSISLLLKPEFTAQ 119

Query: 107 FLLYFLFWDALILGILXXXXXXXXXXXXXXLKGNNHVGWHKICNVYDKYCRH 158
           F +Y    D ++LGIL              LKGN  VGW+KICNVYDK+CR+
Sbjct: 120 FSIYLASLDMVMLGILASATGTAGGVAYIALKGNEEVGWNKICNVYDKFCRY 171


>AT4G15610.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr4:8909162-8910641 FORWARD LENGTH=193
          Length = 193

 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 32  DLILRXXXXXXXXXXXXXMVTSNQTEYVPLPR------PAKFRYSPAFIYFVAAFSVSGL 85
            ++LR             MVTS QT+ + LP        A+F  SPA IYFV A SV+  
Sbjct: 30  QVVLRFVLFAATLTSIVVMVTSKQTKNIFLPGTPIRIPAAEFTNSPALIYFVVALSVACF 89

Query: 86  YSILTALASLSVIRKPALKTKFLLYFLFWDALILGILXXXXXXXXXXXXXXLKGNNHVGW 145
           YSI++   ++S  +K +     LL     DA+++GI+              LKGN  V W
Sbjct: 90  YSIVSTFVTVSAFKKHSCSAVLLLNLAIMDAVMVGIVASATGAGGGVAYLGLKGNKEVRW 149

Query: 146 HKICNVYDKYCRH 158
            KIC++YDK+CRH
Sbjct: 150 GKICHIYDKFCRH 162