Miyakogusa Predicted Gene

Lj4g3v2215300.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2215300.2 Non Chatacterized Hit- tr|I1MS36|I1MS36_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.58127 PE,85.19,0,Protein
present in Fab1, YOTB, Vac1, and EEA,Zinc finger, FYVE-type; FYVE/PHD
zinc finger,Zinc finge,CUFF.50512.2
         (479 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43230.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family ...   645   0.0  
AT1G29800.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family ...   390   e-109
AT1G29800.2 | Symbols:  | RING/FYVE/PHD-type zinc finger family ...   390   e-108
AT1G20110.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    65   8e-11
AT4G33240.1 | Symbols: FAB1A | 1-phosphatidylinositol-4-phosphat...    61   2e-09
AT4G33240.3 | Symbols: FAB1A | 1-phosphatidylinositol-4-phosphat...    61   2e-09
AT4G33240.2 | Symbols: FAB1A | 1-phosphatidylinositol-4-phosphat...    61   2e-09
AT1G61690.1 | Symbols:  | phosphoinositide binding | chr1:227828...    57   3e-08
AT3G14270.1 | Symbols: FAB1B | phosphatidylinositol-4-phosphate ...    56   7e-08
AT5G12350.1 | Symbols:  | Regulator of chromosome condensation (...    51   1e-06
AT3G47660.1 | Symbols:  | Regulator of chromosome condensation (...    51   2e-06
AT1G69710.1 | Symbols:  | Regulator of chromosome condensation (...    51   2e-06
AT5G19420.2 | Symbols:  | Regulator of chromosome condensation (...    50   5e-06
AT5G19420.1 | Symbols:  | Regulator of chromosome condensation (...    49   5e-06

>AT3G43230.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family
           protein | chr3:15207776-15209599 FORWARD LENGTH=485
          Length = 485

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/420 (74%), Positives = 360/420 (85%), Gaps = 7/420 (1%)

Query: 50  EKLYQFPSEDD-DLFDGGYESEDDAYARRITP--SNMPPEVNLKNVLGGICAILTGKNKA 106
           +K  ++P  D  D  D GY+S  +       P   N  PEVNLKNVL G+ AI+TG+NK 
Sbjct: 55  KKEVEYPIIDSGDYVDDGYDSSGELSTTTTPPIQGNEKPEVNLKNVLTGLIAIVTGRNKN 114

Query: 107 PKIAVNEQLPISNVSFFDSGNDGD-IVHASVYSPSAPPLCLPNGADYSSYKEVLEAEPPD 165
           P   ++++ P SNVSF  SG +GD  VH+SVY PSAPPL  P+G +YS YKE+LEAEPP+
Sbjct: 115 P---LDQKNPSSNVSFLGSGTNGDTFVHSSVYIPSAPPLLEPSGINYSVYKELLEAEPPE 171

Query: 166 WLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCLLPVRFRERNPQRVCDS 225
           WLPDS  + CMQC+ PFTA+T GRHHCRFCGGIFCRNC+KGRCL+P RFRERNPQRVCDS
Sbjct: 172 WLPDSLASTCMQCSTPFTAITCGRHHCRFCGGIFCRNCSKGRCLMPSRFRERNPQRVCDS 231

Query: 226 CYDRLDPLQGVLINTISNAVQPAKHDVMDWTCARGWINLPIGLSMEHEIYKASNTLRSYC 285
           CY+RLDPLQ VLIN+ISNAVQ AKHDV+DWTC+RGW+NLP+GLSME EIYKA+NTLR YC
Sbjct: 232 CYERLDPLQCVLINSISNAVQVAKHDVVDWTCSRGWLNLPVGLSMEDEIYKAANTLRGYC 291

Query: 286 QVAQSNPERSIPLAVLKSAQGLAILTVAKAGALLSYKLGTGLVVARRSDGSWSAPSAIFS 345
           QVA+ +PE+SIP AVL  A+GLAI+TVAKAGALLSYKLGTGLV++RR DGSWSAPSAI S
Sbjct: 292 QVARLDPEKSIPHAVLSRAKGLAIITVAKAGALLSYKLGTGLVISRRPDGSWSAPSAILS 351

Query: 346 LGLGWGAQIGGELMDFIIVLRDMKAVKTFCSRMHFSLGAGCSAAAGPVGRVLEADIRAGD 405
           +GLGWGAQIGGELMDFIIVL D+KAVKTFCSRMHFSLGAGCSAAAGP+GRVLEAD+RAGD
Sbjct: 352 VGLGWGAQIGGELMDFIIVLHDVKAVKTFCSRMHFSLGAGCSAAAGPIGRVLEADLRAGD 411

Query: 406 RGSGMCYTYSCSKGAFVGVSLEGNIVATRRDANLRFYGDPYLTTSDILLGMVDRPKAAQP 465
           +GSG+CYTYS SKGAFVGVSLEGN+VATRRD N++FYGDPYL+TSDILLGMVD+PKAA+P
Sbjct: 412 KGSGVCYTYSRSKGAFVGVSLEGNLVATRRDMNVKFYGDPYLSTSDILLGMVDQPKAAEP 471


>AT1G29800.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family
           protein | chr1:10432736-10435177 FORWARD LENGTH=510
          Length = 510

 Score =  390 bits (1003), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/315 (58%), Positives = 230/315 (73%), Gaps = 1/315 (0%)

Query: 150 ADYSSYKEVLEAEPPDWLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCL 209
           A++ + +E+LE EPP WLPDSA + CM C+  F  +   RHHCR+CGGIFCR+C+KG+ L
Sbjct: 166 ANFGNAREILETEPPKWLPDSAASACMLCSVRFHPIMCSRHHCRYCGGIFCRDCSKGKSL 225

Query: 210 LPVRFRERNPQRVCDSCYDRLDPLQGVLINTISNAVQPAKHDVMDWTCARGWINLPIGLS 269
           +PV+FR  +PQRVCD C+ RL+ +Q  L++ +S A Q   HD+ D +  R W+N P G S
Sbjct: 226 VPVKFRVSDPQRVCDVCFVRLESVQPYLMDQVSPAAQLPTHDLTDLSTLRSWVNFPWGQS 285

Query: 270 MEHEIYKASNTLRSY-CQVAQSNPERSIPLAVLKSAQGLAILTVAKAGALLSYKLGTGLV 328
           ME+EIYKA+NTLR Y  +V  S  ERSIP A+L+ A+GLA++TVA+ G +++YK+GTGLV
Sbjct: 286 MEYEIYKATNTLRGYITKVGSSRTERSIPDAILRQAKGLAVITVARVGVMVTYKIGTGLV 345

Query: 329 VARRSDGSWSAPSAIFSLGLGWGAQIGGELMDFIIVLRDMKAVKTFCSRMHFSLGAGCSA 388
           VARR DGSWS PSAI S GLGWGAQ GGE +DFIIVLR  +A++TF S  H  +GAG SA
Sbjct: 346 VARRDDGSWSPPSAISSFGLGWGAQAGGEFIDFIIVLRTREAIQTFGSNTHLVVGAGLSA 405

Query: 389 AAGPVGRVLEADIRAGDRGSGMCYTYSCSKGAFVGVSLEGNIVATRRDANLRFYGDPYLT 448
           A G  GR +EADIRAG  G   CYTYSCSKGAFVG SLEG+I  TR   N RFYG   L 
Sbjct: 406 AVGVTGRAVEADIRAGSGGYAACYTYSCSKGAFVGCSLEGSIFTTRTSENSRFYGSQSLA 465

Query: 449 TSDILLGMVDRPKAA 463
            SDILLG + RP AA
Sbjct: 466 ASDILLGSLPRPPAA 480


>AT1G29800.2 | Symbols:  | RING/FYVE/PHD-type zinc finger family
           protein | chr1:10432736-10435046 FORWARD LENGTH=496
          Length = 496

 Score =  390 bits (1001), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/315 (58%), Positives = 230/315 (73%), Gaps = 1/315 (0%)

Query: 150 ADYSSYKEVLEAEPPDWLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCL 209
           A++ + +E+LE EPP WLPDSA + CM C+  F  +   RHHCR+CGGIFCR+C+KG+ L
Sbjct: 166 ANFGNAREILETEPPKWLPDSAASACMLCSVRFHPIMCSRHHCRYCGGIFCRDCSKGKSL 225

Query: 210 LPVRFRERNPQRVCDSCYDRLDPLQGVLINTISNAVQPAKHDVMDWTCARGWINLPIGLS 269
           +PV+FR  +PQRVCD C+ RL+ +Q  L++ +S A Q   HD+ D +  R W+N P G S
Sbjct: 226 VPVKFRVSDPQRVCDVCFVRLESVQPYLMDQVSPAAQLPTHDLTDLSTLRSWVNFPWGQS 285

Query: 270 MEHEIYKASNTLRSY-CQVAQSNPERSIPLAVLKSAQGLAILTVAKAGALLSYKLGTGLV 328
           ME+EIYKA+NTLR Y  +V  S  ERSIP A+L+ A+GLA++TVA+ G +++YK+GTGLV
Sbjct: 286 MEYEIYKATNTLRGYITKVGSSRTERSIPDAILRQAKGLAVITVARVGVMVTYKIGTGLV 345

Query: 329 VARRSDGSWSAPSAIFSLGLGWGAQIGGELMDFIIVLRDMKAVKTFCSRMHFSLGAGCSA 388
           VARR DGSWS PSAI S GLGWGAQ GGE +DFIIVLR  +A++TF S  H  +GAG SA
Sbjct: 346 VARRDDGSWSPPSAISSFGLGWGAQAGGEFIDFIIVLRTREAIQTFGSNTHLVVGAGLSA 405

Query: 389 AAGPVGRVLEADIRAGDRGSGMCYTYSCSKGAFVGVSLEGNIVATRRDANLRFYGDPYLT 448
           A G  GR +EADIRAG  G   CYTYSCSKGAFVG SLEG+I  TR   N RFYG   L 
Sbjct: 406 AVGVTGRAVEADIRAGSGGYAACYTYSCSKGAFVGCSLEGSIFTTRTSENSRFYGSQSLA 465

Query: 449 TSDILLGMVDRPKAA 463
            SDILLG + RP AA
Sbjct: 466 ASDILLGSLPRPPAA 480


>AT1G20110.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:6971554-6974578 FORWARD LENGTH=601
          Length = 601

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 159 LEAEPPDWLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCLLPVRFRERN 218
           +  E   W+PD A + C  C + F A  R RHHCR CG +FC  CT+GR  L     +  
Sbjct: 445 VNEEKDHWVPDEAVSKCTSCGSDFGAFIR-RHHCRNCGDVFCDKCTQGRIALTA--EDNA 501

Query: 219 PQ-RVCDSC 226
           PQ RVCD C
Sbjct: 502 PQVRVCDRC 510


>AT4G33240.1 | Symbols: FAB1A | 1-phosphatidylinositol-4-phosphate
           5-kinases;zinc ion
           binding;1-phosphatidylinositol-3-phosphate 5-kinases |
           chr4:16029504-16037278 REVERSE LENGTH=1757
          Length = 1757

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 166 WLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCLLP---VRFRERNPQ-- 220
           W+PD +  VC +C A FT   R RHHCR CG +FC  C       P    +     P+  
Sbjct: 33  WMPDQSCPVCYECDAQFTVFNR-RHHCRLCGRVFCAKCAANSIPSPSDETKDSHEEPERI 91

Query: 221 RVCDSCYDRLDPLQGVL 237
           RVC+ CY + +  QG++
Sbjct: 92  RVCNYCYKQWE--QGIV 106


>AT4G33240.3 | Symbols: FAB1A | 1-phosphatidylinositol-4-phosphate
           5-kinases;zinc ion
           binding;1-phosphatidylinositol-3-phosphate 5-kinases |
           chr4:16029504-16037278 REVERSE LENGTH=1753
          Length = 1753

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 166 WLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCLLP---VRFRERNPQ-- 220
           W+PD +  VC +C A FT   R RHHCR CG +FC  C       P    +     P+  
Sbjct: 33  WMPDQSCPVCYECDAQFTVFNR-RHHCRLCGRVFCAKCAANSIPSPSDETKDSHEEPERI 91

Query: 221 RVCDSCYDRLDPLQGVL 237
           RVC+ CY + +  QG++
Sbjct: 92  RVCNYCYKQWE--QGIV 106


>AT4G33240.2 | Symbols: FAB1A | 1-phosphatidylinositol-4-phosphate
           5-kinases;zinc ion
           binding;1-phosphatidylinositol-3-phosphate 5-kinases |
           chr4:16029504-16037278 REVERSE LENGTH=1756
          Length = 1756

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 166 WLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCLLP---VRFRERNPQ-- 220
           W+PD +  VC +C A FT   R RHHCR CG +FC  C       P    +     P+  
Sbjct: 33  WMPDQSCPVCYECDAQFTVFNR-RHHCRLCGRVFCAKCAANSIPSPSDETKDSHEEPERI 91

Query: 221 RVCDSCYDRLDPLQGVL 237
           RVC+ CY + +  QG++
Sbjct: 92  RVCNYCYKQWE--QGIV 106


>AT1G61690.1 | Symbols:  | phosphoinositide binding |
           chr1:22782825-22786782 REVERSE LENGTH=1171
          Length = 1171

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 166 WLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCLLPVRFRERNPQRVCDS 225
           W+ D++   C  C++ FT + R +HHCR CGG+FC  CT+ R  L +R +  +P R+C+ 
Sbjct: 18  WVVDASH--CQGCSSQFTFINR-KHHCRRCGGLFCGTCTQQR--LSLRGQGDSPVRICEP 72

Query: 226 C 226
           C
Sbjct: 73  C 73


>AT3G14270.1 | Symbols: FAB1B | phosphatidylinositol-4-phosphate
           5-kinase family protein | chr3:4754624-4761185 FORWARD
           LENGTH=1791
          Length = 1791

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 166 WLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRC-LLPVRFRERNPQ---- 220
           W+PD +  VC +C   FT + R RHHCR CG +FC  CT       P   R         
Sbjct: 36  WMPDQSCRVCYECDCQFTLINR-RHHCRHCGRVFCGKCTANSIPFAPSDLRTPREDWERI 94

Query: 221 RVCDSCY 227
           RVC+ C+
Sbjct: 95  RVCNYCF 101


>AT5G12350.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:3995789-4000545 FORWARD LENGTH=1075
          Length = 1075

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 166 WLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGR----CLLPVRFRERNPQR 221
           W      ++C  C  PF+   R RH+C  CG +FC +CT  +    C+ P       P R
Sbjct: 653 WASGMDQSMCSGCRQPFS-FKRKRHNCYNCGLVFCHSCTSKKSLKACMAP---NPNKPYR 708

Query: 222 VCDSCYDRL 230
           VCD C+++L
Sbjct: 709 VCDKCFNKL 717


>AT3G47660.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family protein | chr3:17571192-17574805 FORWARD
           LENGTH=954
          Length = 954

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)

Query: 172 TTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCLLPVRFRERN-PQRVCDSCYDRL 230
           +T C  C  PF  + R  H+C  CG +FC +CT  + L      + N P RVCD CY +L
Sbjct: 642 STKCSGCRHPFNYM-RKLHNCYNCGSVFCNSCTSKKSLAAAMAPKTNRPYRVCDDCYIKL 700

Query: 231 DPLQGVLIN-----TISNAVQPAKHDV 252
           + ++  L         SNA  P+ +++
Sbjct: 701 EGIRESLATPANSARFSNASLPSSYEM 727


>AT1G69710.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr1:26222325-26226530 FORWARD LENGTH=1041
          Length = 1041

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 166 WLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCLLPVRFRERN-PQRVCD 224
           W+P S  ++C  C  PF    R RH+C  CG +FC+ C+  + L      + N P RVC 
Sbjct: 648 WVPGSEHSLCAGCRNPFN-FRRKRHNCYNCGLVFCKVCSSRKSLRAALAPDMNKPYRVCY 706

Query: 225 SCYDRL 230
            C+ +L
Sbjct: 707 GCFTKL 712


>AT5G19420.2 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:6547945-6552981 REVERSE LENGTH=1139
          Length = 1139

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 166 WLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGR----CLLPVRFRERNPQR 221
           W      ++C  C  PF    R RH+C  CG +FC +C+  +    C+ P       P R
Sbjct: 691 WASGMDQSMCSGCRQPFN-FKRKRHNCYNCGLVFCHSCSNKKSLKACMAP---NPNKPYR 746

Query: 222 VCDSCYDRL 230
           VCD C+++L
Sbjct: 747 VCDRCFNKL 755


>AT5G19420.1 | Symbols:  | Regulator of chromosome condensation
           (RCC1) family with FYVE zinc finger domain |
           chr5:6547945-6552866 REVERSE LENGTH=1105
          Length = 1105

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 166 WLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGR----CLLPVRFRERNPQR 221
           W      ++C  C  PF    R RH+C  CG +FC +C+  +    C+ P       P R
Sbjct: 657 WASGMDQSMCSGCRQPFN-FKRKRHNCYNCGLVFCHSCSNKKSLKACMAP---NPNKPYR 712

Query: 222 VCDSCYDRL 230
           VCD C+++L
Sbjct: 713 VCDRCFNKL 721