Miyakogusa Predicted Gene
- Lj4g3v2180390.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2180390.1 CUFF.50441.1
(380 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor 5... 178 7e-45
AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor 6... 158 5e-39
AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor 2... 142 3e-34
AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor 3... 132 5e-31
AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor 1... 125 4e-29
AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor 4... 120 2e-27
AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor 7... 107 2e-23
AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor 8... 93 3e-19
AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor 9... 84 1e-16
>AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 |
chr3:4608526-4610160 FORWARD LENGTH=397
Length = 397
Score = 178 bits (451), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 95/113 (84%), Gaps = 4/113 (3%)
Query: 8 RFPFTSSQWQELEHQALIYKYMASGISIPPDLLFTIK--MDSPLTSRLLPHQSQHFGWNY 65
R PFT +QW+ELEHQALIYKYM SG+ +PP+L+F+I+ +D+ L SRLLPHQS GW
Sbjct: 14 RPPFTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVSRLLPHQS--LGWGC 71
Query: 66 LPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118
MG GRK DPEPGRCRRTDGKKWRCS+EAYPDSKYCE+HMHRG+NR+RK ++
Sbjct: 72 YQMGFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124
>AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor 6 |
chr2:2426340-2427255 FORWARD LENGTH=244
Length = 244
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/120 (65%), Positives = 89/120 (74%), Gaps = 11/120 (9%)
Query: 8 RFPFTSSQWQELEHQALIYKYMASGISIPPDLLFTIK---------MDSPLTSRLLPHQS 58
R PFT SQW+ELE+QAL++KY+A+ + +PP LLF IK S +S P S
Sbjct: 4 RIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLS 63
Query: 59 QHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNR--SRKP 116
HFGWN MG+GRKID EPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNR SRKP
Sbjct: 64 PHFGWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKP 123
>AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor 2 |
chr4:17725533-17727609 REVERSE LENGTH=535
Length = 535
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 10 PFTSSQWQELEHQALIYKYMASGISIPPDLLFTIKMDSPLTSRLLPHQSQHFGWNYLPMG 69
PFT +QW ELE QALIYKY+ + + +P LL +IK L P FGW +G
Sbjct: 164 PFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSLPPSS---FGWGTFHLG 220
Query: 70 L-GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTAI 128
G +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RG++RSRKPVEV TA
Sbjct: 221 FAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEVQSGQNQTAA 280
Query: 129 DAGDASAAP 137
A A P
Sbjct: 281 AASKAVTTP 289
>AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor 3 |
chr2:15270300-15272617 REVERSE LENGTH=398
Length = 398
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 88/131 (67%), Gaps = 18/131 (13%)
Query: 8 RFP-----FTSSQWQELEHQALIYKYMASGISIPPDLLFTIKMD----SPLTSRLLPHQS 58
RFP F+ +QWQELE QALIY+YM +G ++P +LL IK SP S L H
Sbjct: 69 RFPKMGSFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSP--SYFLHHPL 126
Query: 59 QHFGWNYLPMG-LGRK-IDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKP 116
QH +Y P LGR +DPEPGRCRRTDGKKWRCS++ + KYCERHMHRG+NRSRKP
Sbjct: 127 QHLP-HYQPAWYLGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKP 185
Query: 117 VEVLKTTPTTA 127
VE TPTT
Sbjct: 186 VE----TPTTV 192
>AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 |
chr2:9728841-9731141 FORWARD LENGTH=530
Length = 530
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 76/115 (66%), Gaps = 10/115 (8%)
Query: 8 RFPFTSSQWQELEHQALIYKYMASGISIPPDLLFTIKMDSPLTSRLLPHQS---QHFGWN 64
+ PF+ +QW ELE QALIYKY+ + + +P + L P+ S FGW
Sbjct: 131 KGPFSLTQWAELEQQALIYKYITANVPVP------SSLLLSLKKSFFPYGSLPPNSFGWG 184
Query: 65 YLPMGL-GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118
+G G +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RG++RSRKPVE
Sbjct: 185 SFHLGFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 239
>AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor 4 |
chr3:19616177-19618268 REVERSE LENGTH=380
Length = 380
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 79/115 (68%), Gaps = 10/115 (8%)
Query: 11 FTSSQWQELEHQALIYKYMASGISIPPDLLFTIKM----DSPLTSRLLPHQSQHFGWNYL 66
F+ +QWQELE QALIY+YM +G S+P +LL IK SP+ L H QH ++
Sbjct: 83 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPM--HFLHHPLQHSFPHHQ 140
Query: 67 P---MGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118
P G G +DPEPGRC+RTDGKKWRCS++ KYC+RH+HRG+NRSRKPVE
Sbjct: 141 PSWYWGRG-AMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVE 194
>AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor 7 |
chr5:21794636-21795929 FORWARD LENGTH=365
Length = 365
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 71/110 (64%), Gaps = 17/110 (15%)
Query: 9 FPFTSSQWQELEHQALIYKYMASGISIPPDLLFTIKMDSPLTSRLLPHQSQHFGWNYLPM 68
+PFT++Q +ELE QA+IYKYM + I +P DLL + SP S P +++
Sbjct: 58 YPFTNAQLKELERQAMIYKYMIASIPVPFDLLVS----SP--SSASPCNNKNIAG----- 106
Query: 69 GLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118
D EPGRCRRTDGKKWRC+KE + KYCE+H+HRG+ RSRK VE
Sbjct: 107 ------DLEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVE 150
>AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor 8 |
chr4:12535972-12539387 FORWARD LENGTH=493
Length = 493
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 71/138 (51%), Gaps = 31/138 (22%)
Query: 11 FTSSQWQELEHQALIYKYMASGISIPPDLL----------------------FTIKMDS- 47
F+ +QW ELE Q IYKYM + + +PP+LL F+I D
Sbjct: 150 FSEAQWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPDVDTYRSGMFSIYADYK 209
Query: 48 --PLTSRLLPHQSQHFGWNYLPMGLG-----RKIDPEPGRCRRTDGKKWRCSKEAYPDSK 100
PL+ + + G + L +G+ D EP RC+RTDGKKWRCS+ PD K
Sbjct: 210 NLPLSMWMTVTVAVATGGS-LQLGIASSASNNTADLEPWRCKRTDGKKWRCSRNVIPDQK 268
Query: 101 YCERHMHRGKNRSRKPVE 118
YCERH H+ + RSRK VE
Sbjct: 269 YCERHTHKSRPRSRKHVE 286
>AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor 9 |
chr2:18745583-18747403 FORWARD LENGTH=429
Length = 429
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 6 RNRFPFT-SSQWQELEHQALIYKYMASGISIPPDLLFTIKMDSPLTSRLLPHQSQHFGWN 64
RN++P+ ++Q E QAL+Y+Y+ +G+ +P L+ I L+S + +
Sbjct: 17 RNKWPWMKAAQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLS 76
Query: 65 YLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRK 115
+ ++ EP RCRRTDGKKWRCS KYCERHMHRG+ RSRK
Sbjct: 77 NKGVTHIDTLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRK 127
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 71 GRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118
G + D EPGRCRRTDGKKWRCSK+ KYC++HMHRG + + PV+
Sbjct: 301 GVETDNEPGRCRRTDGKKWRCSKDVLSGQKYCDKHMHRGMKK-KHPVD 347