Miyakogusa Predicted Gene
- Lj4g3v2140320.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2140320.1 Non Chatacterized Hit- tr|I1GXU4|I1GXU4_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,41.72,1e-18,zinc finger binding to DNA consensus sequenc,Zinc
finger, GATA-type; GATA,Zinc finger, GATA-type; SU,CUFF.50368.1
(325 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26150.1 | Symbols: CGA1, GATA22, GNL | cytokinin-responsive ... 86 3e-17
AT5G56860.1 | Symbols: GNC, GATA21 | GATA type zinc finger trans... 84 2e-16
AT5G49300.1 | Symbols: GATA16 | GATA transcription factor 16 | c... 72 3e-13
AT4G36620.1 | Symbols: GATA19 | GATA transcription factor 19 | c... 70 2e-12
AT5G26930.1 | Symbols: GATA23 | GATA transcription factor 23 | c... 70 3e-12
AT2G18380.1 | Symbols: GATA20 | GATA transcription factor 20 | c... 67 1e-11
AT3G50870.1 | Symbols: MNP, HAN, GATA18 | GATA type zinc finger ... 67 2e-11
AT3G06740.1 | Symbols: GATA15 | GATA transcription factor 15 | c... 65 6e-11
AT3G16870.1 | Symbols: GATA17 | GATA transcription factor 17 | c... 65 7e-11
AT4G16141.1 | Symbols: | GATA type zinc finger transcription fa... 65 8e-11
AT1G08010.2 | Symbols: GATA11 | GATA transcription factor 11 | c... 61 1e-09
AT1G08010.1 | Symbols: GATA11 | GATA transcription factor 11 | c... 61 1e-09
AT1G08000.2 | Symbols: GATA10 | GATA transcription factor 10 | c... 58 8e-09
AT1G08000.1 | Symbols: GATA10 | GATA transcription factor 10 | c... 58 8e-09
AT3G45170.1 | Symbols: GATA14 | GATA transcription factor 14 | c... 57 2e-08
AT4G32890.1 | Symbols: GATA9 | GATA transcription factor 9 | chr... 56 3e-08
AT5G25830.1 | Symbols: GATA12 | GATA transcription factor 12 | c... 56 3e-08
AT3G54810.1 | Symbols: BME3-ZF, BME3, GATA8 | Plant-specific GAT... 56 4e-08
AT3G54810.2 | Symbols: BME3-ZF, BME3, GATA8 | Plant-specific GAT... 56 4e-08
AT2G45050.1 | Symbols: GATA2 | GATA transcription factor 2 | chr... 55 6e-08
AT3G20750.1 | Symbols: GATA29 | GATA transcription factor 29 | c... 55 8e-08
AT4G34680.2 | Symbols: GATA3 | GATA transcription factor 3 | chr... 54 1e-07
AT4G34680.1 | Symbols: GATA3 | GATA transcription factor 3 | chr... 54 1e-07
AT3G60530.1 | Symbols: GATA4 | GATA transcription factor 4 | chr... 54 2e-07
AT3G24050.1 | Symbols: GATA1 | GATA transcription factor 1 | chr... 54 2e-07
AT2G28340.1 | Symbols: GATA13 | GATA transcription factor 13 | c... 54 2e-07
AT5G66320.2 | Symbols: GATA5 | GATA transcription factor 5 | chr... 52 4e-07
AT5G66320.1 | Symbols: GATA5 | GATA transcription factor 5 | chr... 52 4e-07
AT3G51080.1 | Symbols: GATA6 | GATA transcription factor 6 | chr... 52 5e-07
AT4G36240.1 | Symbols: GATA7 | GATA transcription factor 7 | chr... 51 1e-06
>AT4G26150.1 | Symbols: CGA1, GATA22, GNL | cytokinin-responsive
gata factor 1 | chr4:13253210-13254659 FORWARD
LENGTH=352
Length = 352
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 12/98 (12%)
Query: 120 GSLSVKWMSSKMRIMRKMIVPDQRGTSYAVAENTMQRFE-DQKLPLSPVGTDXXXXXXXX 178
G+ S+KW+SSK+R+M+K + ++++ Q DQ LS
Sbjct: 144 GTNSLKWISSKVRLMKK------KKAIITTSDSSKQHTNNDQSSNLS-----NSERQNGY 192
Query: 179 XXXXTVRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQ 216
+R+C+DCNTTKTPLWRSGPRGPKSLCNACGIRQ
Sbjct: 193 NNDCVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQ 230
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 36/40 (90%), Gaps = 1/40 (2%)
Query: 286 FEDLTLSLSKNLASLQQVFPQDEKEAAILLMALSYGLVHG 325
F+DL L LSK+ ++ QQVFPQDEKEAAILLMALS+G+VHG
Sbjct: 314 FDDLALLLSKS-SAYQQVFPQDEKEAAILLMALSHGMVHG 352
>AT5G56860.1 | Symbols: GNC, GATA21 | GATA type zinc finger
transcription factor family protein |
chr5:22989630-22991351 REVERSE LENGTH=398
Length = 398
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 33/36 (91%), Positives = 35/36 (97%)
Query: 183 TVRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 218
+RVC+DCNTTKTPLWRSGPRGPKSLCNACGIRQRK
Sbjct: 228 VIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRK 263
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 38/42 (90%), Gaps = 1/42 (2%)
Query: 284 FGFEDLTLSLSKNLASLQQVFPQDEKEAAILLMALSYGLVHG 325
F F+DLT+ LSK+ ++ QQVFPQDEKEAA+LLMALSYG+VHG
Sbjct: 358 FCFDDLTIMLSKS-SAYQQVFPQDEKEAAVLLMALSYGMVHG 398
>AT5G49300.1 | Symbols: GATA16 | GATA transcription factor 16 |
chr5:19984849-19985475 REVERSE LENGTH=139
Length = 139
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 63/146 (43%), Gaps = 49/146 (33%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKXXXXXXXXXXXXSGDGTILVTAESSX 244
+ CADC T+KTPLWR GP GPKSLCNACGIR RK GT
Sbjct: 36 KTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRR-----------GGT--------- 75
Query: 245 XXXXXXXXXXXXXXXESAPPVAQIKKKHRANKPSQSKKKFG------FEDLTLSLSKNLA 298
+ KK + + +KFG DL + +
Sbjct: 76 ----------------------EDNKKLKKSSSGGGNRKFGESLKQSLMDLGIRKRSTVE 113
Query: 299 SLQQVFPQDEKEAAILLMALSYGLVH 324
+Q ++E +AA+LLMALSYG V+
Sbjct: 114 KQRQKLGEEE-QAAVLLMALSYGSVY 138
>AT4G36620.1 | Symbols: GATA19 | GATA transcription factor 19 |
chr4:17268906-17269662 REVERSE LENGTH=211
Length = 211
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 35/53 (66%)
Query: 184 VRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKXXXXXXXXXXXXSGDGTI 236
R CA+C+TT TPLWR+GPRGPKSLCNACGIR +K SG G+
Sbjct: 74 ARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASTARNSTSGGGST 126
>AT5G26930.1 | Symbols: GATA23 | GATA transcription factor 23 |
chr5:9479592-9480061 FORWARD LENGTH=120
Length = 120
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 31/36 (86%)
Query: 183 TVRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 218
T+R C++C TTKTP+WR GP GPKSLCNACGIR RK
Sbjct: 24 TIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRK 59
>AT2G18380.1 | Symbols: GATA20 | GATA transcription factor 20 |
chr2:7982868-7984017 REVERSE LENGTH=208
Length = 208
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 34/51 (66%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKXXXXXXXXXXXXSGDGT 235
R CA C+TT TPLWR+GP+GPKSLCNACGIR +K SG G+
Sbjct: 92 RRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRATARNLTISGGGS 142
>AT3G50870.1 | Symbols: MNP, HAN, GATA18 | GATA type zinc finger
transcription factor family protein |
chr3:18911112-18912369 FORWARD LENGTH=295
Length = 295
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 184 VRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 218
R CA+C+TT TPLWR+GPRGPKSLCNACGIR +K
Sbjct: 151 ARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKK 185
>AT3G06740.1 | Symbols: GATA15 | GATA transcription factor 15 |
chr3:2126658-2127265 FORWARD LENGTH=149
Length = 149
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 27/32 (84%)
Query: 187 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 218
CA C T+KTPLWR GP GPKSLCNACGIR RK
Sbjct: 43 CAICGTSKTPLWRGGPAGPKSLCNACGIRNRK 74
>AT3G16870.1 | Symbols: GATA17 | GATA transcription factor 17 |
chr3:5763752-5764576 REVERSE LENGTH=190
Length = 190
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 28/36 (77%)
Query: 183 TVRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 218
T R C DC T +TPLWR GP GPKSLCNACGI+ RK
Sbjct: 40 TKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRK 75
>AT4G16141.1 | Symbols: | GATA type zinc finger transcription
factor family protein | chr4:9131872-9132893 REVERSE
LENGTH=197
Length = 197
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 183 TVRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRK 218
T + C DC T++TPLWR GP GPKSLCNACGI+ RK
Sbjct: 35 TKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRK 70
>AT1G08010.2 | Symbols: GATA11 | GATA transcription factor 11 |
chr1:2486202-2487402 REVERSE LENGTH=303
Length = 303
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 184 VRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
VR C C TTKTP WR GP GPK+LCNACG+R R
Sbjct: 219 VRKCTHCETTKTPQWREGPSGPKTLCNACGVRFR 252
>AT1G08010.1 | Symbols: GATA11 | GATA transcription factor 11 |
chr1:2486202-2487402 REVERSE LENGTH=303
Length = 303
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 184 VRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
VR C C TTKTP WR GP GPK+LCNACG+R R
Sbjct: 219 VRKCTHCETTKTPQWREGPSGPKTLCNACGVRFR 252
>AT1G08000.2 | Symbols: GATA10 | GATA transcription factor 10 |
chr1:2483460-2484564 REVERSE LENGTH=308
Length = 308
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 184 VRVCADCNTTKTPLWRSGPRGPKSLCNACGIR 215
VR+C C T TP WR GP GPK+LCNACG+R
Sbjct: 217 VRICTHCETITTPQWRQGPSGPKTLCNACGVR 248
>AT1G08000.1 | Symbols: GATA10 | GATA transcription factor 10 |
chr1:2483460-2484564 REVERSE LENGTH=308
Length = 308
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 184 VRVCADCNTTKTPLWRSGPRGPKSLCNACGIR 215
VR+C C T TP WR GP GPK+LCNACG+R
Sbjct: 217 VRICTHCETITTPQWRQGPSGPKTLCNACGVR 248
>AT3G45170.1 | Symbols: GATA14 | GATA transcription factor 14 |
chr3:16537538-16538232 FORWARD LENGTH=204
Length = 204
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 183 TVRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
T + C+ C T KTPLWR GPRG +LCNACG+R R
Sbjct: 113 TDKSCSHCGTRKTPLWREGPRGAGTLCNACGMRYR 147
>AT4G32890.1 | Symbols: GATA9 | GATA transcription factor 9 |
chr4:15875598-15876615 FORWARD LENGTH=308
Length = 308
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
R C C T KTP WR+GP GPK+LCNACG+R +
Sbjct: 197 RRCLHCATEKTPQWRTGPMGPKTLCNACGVRYK 229
>AT5G25830.1 | Symbols: GATA12 | GATA transcription factor 12 |
chr5:9004398-9005502 REVERSE LENGTH=331
Length = 331
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
R C C T KTP WR+GP GPK+LCNACG+R +
Sbjct: 219 RRCLHCATDKTPQWRTGPMGPKTLCNACGVRYK 251
>AT3G54810.1 | Symbols: BME3-ZF, BME3, GATA8 | Plant-specific
GATA-type zinc finger transcription factor family
protein | chr3:20296957-20298236 FORWARD LENGTH=322
Length = 322
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 184 VRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
+R C C TKTP WR GP GPK+LCNACG+R +
Sbjct: 228 LRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK 261
>AT3G54810.2 | Symbols: BME3-ZF, BME3, GATA8 | Plant-specific
GATA-type zinc finger transcription factor family
protein | chr3:20296957-20298236 FORWARD LENGTH=322
Length = 322
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 184 VRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
+R C C TKTP WR GP GPK+LCNACG+R +
Sbjct: 228 LRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK 261
>AT2G45050.1 | Symbols: GATA2 | GATA transcription factor 2 |
chr2:18582958-18583845 FORWARD LENGTH=264
Length = 264
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 184 VRVCADCNTTKTPLWRSGPRGPKSLCNACGIR 215
+R C C + KTP WR+GP GPK+LCNACG+R
Sbjct: 178 MRRCTHCASEKTPQWRTGPLGPKTLCNACGVR 209
>AT3G20750.1 | Symbols: GATA29 | GATA transcription factor 29 |
chr3:7255016-7256140 FORWARD LENGTH=208
Length = 208
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 189 DCNTTKTPLWRSGPRGPKSLCNACGIRQRK 218
+CN TP+WR GP GPKSLCNACGI+ RK
Sbjct: 163 NCNALNTPMWRRGPLGPKSLCNACGIKFRK 192
>AT4G34680.2 | Symbols: GATA3 | GATA transcription factor 3 |
chr4:16553700-16554610 FORWARD LENGTH=269
Length = 269
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIR 215
R C+ C T TP WR+GP GPK+LCNACG+R
Sbjct: 180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVR 210
>AT4G34680.1 | Symbols: GATA3 | GATA transcription factor 3 |
chr4:16553700-16554610 FORWARD LENGTH=269
Length = 269
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIR 215
R C+ C T TP WR+GP GPK+LCNACG+R
Sbjct: 180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVR 210
>AT3G60530.1 | Symbols: GATA4 | GATA transcription factor 4 |
chr3:22373348-22374147 FORWARD LENGTH=240
Length = 240
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 184 VRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
R C C + KTP WR+GP GPK+LCNACG+R +
Sbjct: 157 ARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK 190
>AT3G24050.1 | Symbols: GATA1 | GATA transcription factor 1 |
chr3:8686060-8687462 FORWARD LENGTH=274
Length = 274
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
R C C KTP WR+GP GPK+LCNACG+R +
Sbjct: 194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYK 226
>AT2G28340.1 | Symbols: GATA13 | GATA transcription factor 13 |
chr2:12103672-12106172 FORWARD LENGTH=291
Length = 291
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 22/31 (70%)
Query: 187 CADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
C C TT TP WR GP G K+LCNACGIR R
Sbjct: 193 CTHCETTTTPQWREGPNGRKTLCNACGIRFR 223
>AT5G66320.2 | Symbols: GATA5 | GATA transcription factor 5 |
chr5:26496208-26497309 REVERSE LENGTH=339
Length = 339
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
R C+ C KTP WR+GP G K+LCNACG+R +
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK 281
>AT5G66320.1 | Symbols: GATA5 | GATA transcription factor 5 |
chr5:26496208-26497309 REVERSE LENGTH=339
Length = 339
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
R C+ C KTP WR+GP G K+LCNACG+R +
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK 281
>AT3G51080.1 | Symbols: GATA6 | GATA transcription factor 6 |
chr3:18973639-18974668 FORWARD LENGTH=312
Length = 312
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIRQR 217
R C C KTP WR+GP G K+LCNACG+R +
Sbjct: 221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYK 253
>AT4G36240.1 | Symbols: GATA7 | GATA transcription factor 7 |
chr4:17147376-17148211 REVERSE LENGTH=238
Length = 238
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 185 RVCADCNTTKTPLWRSGPRGPKSLCNACGIR 215
R C+ C KTP WR GP G K+LCNACG+R
Sbjct: 164 RCCSHCGVQKTPQWRMGPLGAKTLCNACGVR 194