Miyakogusa Predicted Gene

Lj4g3v2121660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2121660.1 tr|A9SIR8|A9SIR8_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,56.47,8e-17,MRP-S33,Ribosomal protein S27/S33,
mitochondrial; seg,NULL,NODE_69823_length_611_cov_83.433716.path2.1
         (94 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44710.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ribosomal ...   116   4e-27

>AT5G44710.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ribosomal
           protein S27/S33, mitochondrial (InterPro:IPR013219); Has
           101 Blast hits to 101 proteins in 55 species: Archae -
           0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26;
           Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
           | chr5:18041621-18042322 FORWARD LENGTH=102
          Length = 102

 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 70/94 (74%)

Query: 1   MLTAAITGGVTEARASIFGHQLNLTGKKSPHKVLRMKLFGEKVAQWYPHDIKKDDPLVMA 60
           ++++A+  GVTEARA IFGH LN TG++SPHK+LR KL G+KVA+WYP+DIK +DP V+A
Sbjct: 9   LISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDIKNEDPNVLA 68

Query: 61  REQQERLSKLEMLXXXXXXXXXXXXXXXAAKRNK 94
           RE++ER+SKLEML               AAKRNK
Sbjct: 69  REEKERISKLEMLKRRDKGPPKKGHGKRAAKRNK 102