Miyakogusa Predicted Gene

Lj4g3v2120510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2120510.1 Non Chatacterized Hit- tr|B3H692|B3H692_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At2,31.84,5e-18,seg,NULL,CUFF.50272.1
         (206 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18969.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    96   2e-20
AT4G30180.1 | Symbols:  | sequence-specific DNA binding transcri...    66   2e-11

>AT2G18969.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: sequence-specific DNA binding transcription
           factors;transcription regulators (TAIR:AT4G30180.1); Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr2:8229047-8229574
           REVERSE LENGTH=175
          Length = 175

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 33/201 (16%)

Query: 6   SKRRRVYSLEPSKVVQSLFARNYLNYLVPALMKIKAKSPTSAEDSCRDCDVKKNVKYEVD 65
           +KR+RV+SL+P+K  +++FAR Y+++LVPAL KI     +S  +      +++ VK+EVD
Sbjct: 7   NKRKRVFSLQPNKNPKAVFARRYVSHLVPALKKINMNKSSSKTN---KQSLEQTVKHEVD 63

Query: 66  MAMVFSAQGFAWSEGLKLKLQKDHDVNENVAAANTSFLKSESSTEEGSSRICDQNEIVPV 125
           MA   SAQ FAWS  L+ KL      +    +++ S +   SS  +G  +  D +E    
Sbjct: 64  MAFALSAQEFAWSRFLQQKLLSSPYDDPISTSSSPSEILERSSKRQGGEKHQDSDEEEEG 123

Query: 126 DFCANXXXXXXXXXXXEMPELEKGLGRXXXXXXXXQLKSLRKLVPGGEEICDEDMVGELE 185
                                              +LK L+KL+PGGEE+  E+++ E+ 
Sbjct: 124 GEIKK------------------------------RLKELQKLLPGGEEMNMEEILSEIG 153

Query: 186 SYVRCLQMQVNVLQCLVAETS 206
           SY+ CL++Q+ VL+ +V + +
Sbjct: 154 SYIVCLELQMIVLKSIVQDNT 174


>AT4G30180.1 | Symbols:  | sequence-specific DNA binding
          transcription factors;transcription regulators |
          chr4:14769028-14769504 FORWARD LENGTH=158
          Length = 158

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 11/86 (12%)

Query: 1  METQS-SKRRRVYSLEPSKVVQSLFARNYLNYLVPALMKIKAKSPTSAEDSCRDCDVKKN 59
          ME Q  ++++RV+SLEP+K   ++F R Y ++LVPAL K+     +S          K+ 
Sbjct: 1  MERQIINRKKRVFSLEPNKNPSAVFTRKYTSHLVPALKKLNMNKNSS----------KQT 50

Query: 60 VKYEVDMAMVFSAQGFAWSEGLKLKL 85
          VK+EVDMA+  SAQ FAWS  L  KL
Sbjct: 51 VKHEVDMALALSAQEFAWSRFLLQKL 76



 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 36/46 (78%)

Query: 161 QLKSLRKLVPGGEEICDEDMVGELESYVRCLQMQVNVLQCLVAETS 206
           +L+ L+KL+PGGEE+  E+M+ E+ +Y++CL++Q   L+ +V +++
Sbjct: 113 RLRELKKLLPGGEEMNVEEMLSEIGNYIKCLELQTIALKSIVQDST 158