Miyakogusa Predicted Gene
- Lj4g3v1969840.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1969840.2 Non Chatacterized Hit- tr|B9SWT7|B9SWT7_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,30.38,4e-18,FAMILY NOT NAMED,NULL; seg,NULL,CUFF.49984.2
(271 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 195 3e-50
AT2G25270.1 | Symbols: | unknown protein; LOCATED IN: plasma me... 153 9e-38
AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 115 4e-26
AT1G80540.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 112 3e-25
>AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G25270.1);
Has 177 Blast hits to 172 proteins in 23 species: Archae
- 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
| chr2:5005144-5008140 REVERSE LENGTH=541
Length = 541
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 141/209 (67%), Gaps = 2/209 (0%)
Query: 46 WLRSAAEDA-ASPAVNSTTLVLAQERTRRKDFFHHFRRYNGGWNITNNNYITSVLSTAIP 104
W S E A + +++L+LA +RTRRKD +F+ Y GGWNI+N++Y+TSV TA P
Sbjct: 46 WRTSVIERVIAEESGENSSLILAAKRTRRKDPADNFKLYTGGWNISNSHYLTSVGYTAAP 105
Query: 105 FLAVAVAWFVIFGVILSVICACYFCCPGEPNGYSKLGYASSLIILILCTVAAIAGCIVLY 164
F+ +A+ WFV FG+ LS+IC CY CC + GYS++ YA SLI+LI T+AAI GC+ LY
Sbjct: 106 FIIIALVWFVFFGLSLSLICLCYCCCARQSYGYSRVAYALSLILLISFTIAAIIGCVFLY 165
Query: 165 ISQGKFDGTTSNTLDYVVSQAEFTAENLRNVSRYFDSAEQIVIGVGLSPA-VENDIDNFK 223
QGKF +T++TLDYVVSQA T+ENLRNVS Y ++A+++ + + P V + IDN +
Sbjct: 166 TGQGKFHASTTDTLDYVVSQANLTSENLRNVSDYLNAAKKVDVQSSILPQDVLSSIDNIQ 225
Query: 224 KKISTATDYLSKKTRDPSKMLPRAIDAMR 252
KI+++ LS KT + + +D MR
Sbjct: 226 GKINSSATTLSVKTMENQDKIQNVLDIMR 254
>AT2G25270.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G12400.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr2:10759779-10762358 FORWARD
LENGTH=545
Length = 545
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 119/191 (62%), Gaps = 1/191 (0%)
Query: 63 TLVLAQERTRRKDFFHHFRRYNGGWNITNNNYITSVLSTAIPFLAVAVAWFVIFGVILSV 122
++ LA +RT RKD + F +Y GGWNI+N +Y SV TA+P +A WF+ FG+ L V
Sbjct: 69 SVALAAQRTYRKDPLNGFEKYTGGWNISNQHYWASVSYTAVPLFVLAAVWFLGFGICLLV 128
Query: 123 ICACYFCCPGEPNGYSKLGYASSLIILILCTVAAIAGCIVLYISQGKFDGTTSNTLDYVV 182
IC C+ C GYSK+ Y SLI L++ TV AI GC++LY Q +++ +T+ TL+YV+
Sbjct: 129 ICMCHICHRTNSVGYSKVAYVVSLIFLLIFTVIAIIGCVLLYSGQIRYNKSTTETLEYVM 188
Query: 183 SQAEFTAENLRNVSRYFDSAEQIVIGVGLSPA-VENDIDNFKKKISTATDYLSKKTRDPS 241
SQA+ T LR +S Y SA+Q + L PA V+ +ID K+ ++ +++K+ + S
Sbjct: 189 SQADSTISQLRAISDYLASAKQAAVLQVLLPANVQTEIDQIGVKLDSSVATITEKSTNSS 248
Query: 242 KMLPRAIDAMR 252
+ +D++R
Sbjct: 249 NHIRHFLDSVR 259
>AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits
to 169 proteins in 21 species: Archae - 0; Bacteria - 0;
Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other
Eukaryotes - 5 (source: NCBI BLink). |
chr1:26818244-26820852 FORWARD LENGTH=557
Length = 557
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 109/206 (52%), Gaps = 3/206 (1%)
Query: 49 SAAEDAASPAVNSTTLVLAQERTRRKDFFHHFRRYNGGWNITNNNYITSVLSTAIPFLAV 108
S A S V S L+LA RT+R D F+ Y+GGWNITNN+Y SV T P +
Sbjct: 51 SLAPGPESDDVVSDYLLLAAHRTKRPDILRAFKPYHGGWNITNNHYWASVGFTGAPGFIL 110
Query: 109 AVAWFVIFGVILSVI-CACYFCCPGEPNGYSKLGYASSLIILILCTVAAIAGCIVLYISQ 167
AV W + FG +L V C + C + G S I+LI+ T A GCI+L + Q
Sbjct: 111 AVIWLLSFGSLLVVYHCFKWRIC-DKAKGSSFDTRRICFILLIVFTCVAAVGCILLSVGQ 169
Query: 168 GKFDGTTSNTLDYVVSQAEFTAENLRNVSRYFDSAEQIVIGVGLSPA-VENDIDNFKKKI 226
KF +TL YVV+Q+++T E L+NV++Y A+ I + + P+ V +ID +
Sbjct: 170 DKFHTEAMHTLKYVVNQSDYTVEILQNVTQYLSLAKTINVTQIVIPSDVMGEIDKLNVNL 229
Query: 227 STATDYLSKKTRDPSKMLPRAIDAMR 252
+TA L + T D + + R A+R
Sbjct: 230 NTAAVTLGETTTDNAAKIKRVFYAVR 255
>AT1G80540.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G12400.1); Has 175 Blast hits to 171 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2;
Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr1:30281638-30284258 REVERSE
LENGTH=538
Length = 538
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 60 NSTTLVLAQERTRRKDFFHHFRRYNGGWNITNNNYITSVLSTAIPFLAVAVAWFVIFGVI 119
N T LVLA ERT+R D +HF Y GWN+TN++YI SV +A+PF+ +A+AWFV+ G+
Sbjct: 60 NGTRLVLAAERTQRPDPLNHFNIYVDGWNVTNSHYIASVGFSAVPFIVIAIAWFVLLGLF 119
Query: 120 L--SVICACYFCCPGEPNGYSKLGYASSLIILILCTVAAIAGCIVLYISQGKFDGTTSNT 177
L S +C C C GYS++ Y SL+ L+L T+AA+ G +LY Q +F G+ T
Sbjct: 120 LICSCLCCCCCGCGRRNYGYSRVCYTLSLVFLLLFTIAAVIGSAMLYTGQNEFYGSVERT 179
Query: 178 LDYVVSQAEFTAENLRNVSRYFDSAEQIVI-GVGL-SPAVENDIDNFKKKISTAT-DYLS 234
Y+V QA L ++ SA+ I + G L P +ID+F I + Y
Sbjct: 180 FMYIVKQATGVLTKLTSLWDSIQSAKDIQLDGHNLFPPEFRGNIDHFNNMIKMSNITYPD 239
Query: 235 KKTRDPSKMLPRAIDAMR 252
+ + L A++ +R
Sbjct: 240 RVANQTIRYLTGALNPVR 257