Miyakogusa Predicted Gene

Lj4g3v1880510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1880510.1 tr|A9NJT6|A9NJT6_PICSI Ribosomal protein OS=Picea
sitchensis PE=3 SV=1,61.84,2e-18,rpmJ_bact: ribosomal protein
L36,Ribosomal protein L36; Q8W464_ARATH_Q8W464;,NULL;
Ribosomal_L36,Rib,CUFF.49802.1
         (99 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20180.2 | Symbols:  | Ribosomal protein L36 | chr5:6811312-6...   108   9e-25
AT5G20180.1 | Symbols:  | Ribosomal protein L36 | chr5:6811312-6...   108   9e-25

>AT5G20180.2 | Symbols:  | Ribosomal protein L36 |
           chr5:6811312-6811910 FORWARD LENGTH=103
          Length = 103

 Score =  108 bits (269), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 75/101 (74%), Gaps = 2/101 (1%)

Query: 1   MKVRSSMKKMCEFCMTVKRRGRVYVICSANPKHKQRQGMSTFANEGPS-NPVSLEINSAK 59
           MKVRSS+KKMCEFC TVKRRGRVYVICS+NPKHKQRQG S+FA EG + +P+  E  +++
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 60  QEIRLP-LTLRLGPASIFPQWHNLSMLYGWRVGLTSILFRK 99
           + +RLP   +  G AS+  +    +  +GWR GL SILF++
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQ 101


>AT5G20180.1 | Symbols:  | Ribosomal protein L36 |
           chr5:6811312-6811910 FORWARD LENGTH=103
          Length = 103

 Score =  108 bits (269), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 75/101 (74%), Gaps = 2/101 (1%)

Query: 1   MKVRSSMKKMCEFCMTVKRRGRVYVICSANPKHKQRQGMSTFANEGPS-NPVSLEINSAK 59
           MKVRSS+KKMCEFC TVKRRGRVYVICS+NPKHKQRQG S+FA EG + +P+  E  +++
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 60  QEIRLP-LTLRLGPASIFPQWHNLSMLYGWRVGLTSILFRK 99
           + +RLP   +  G AS+  +    +  +GWR GL SILF++
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQ 101