Miyakogusa Predicted Gene

Lj4g3v1865750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1865750.1 Non Chatacterized Hit- tr|C5YHD4|C5YHD4_SORBI
Putative uncharacterized protein Sb07g004080
OS=Sorghu,38.64,3e-17,CCCH zinc finger,NULL; zf-CCCH,Zinc finger,
CCCH-type; ZF_C3H1,Zinc finger, CCCH-type; no descriptio,CUFF.49770.1
         (341 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19360.1 | Symbols:  | Zinc finger (CCCH-type) family protein...   280   1e-75
AT1G32360.1 | Symbols:  | Zinc finger (CCCH-type) family protein...   145   3e-35
AT2G35430.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...    87   1e-17
AT1G68200.2 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...    49   4e-06
AT1G68200.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...    49   4e-06

>AT3G19360.1 | Symbols:  | Zinc finger (CCCH-type) family protein |
           chr3:6707544-6708864 FORWARD LENGTH=386
          Length = 386

 Score =  280 bits (716), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/321 (47%), Positives = 201/321 (62%), Gaps = 41/321 (12%)

Query: 50  FKRARNFDNGHSNGLSGPPRANQQPQNSQP-----------NRGTSHIFFKTRLCAKFRH 98
            KR R  D+   N  S  P    QP +S P           N+GT++IF+KTR+CAKFR 
Sbjct: 60  LKRPRLVDDNLFNPASSFP----QPSSSNPWMVPSLNPPPVNKGTANIFYKTRMCAKFRA 115

Query: 99  GSCRNGETCNFAHGVDDMRQPPPNWQEIVGL--RGGDERP----------------LSGN 140
           G+CRNGE CNFAHG++D+RQPP NWQEIVG    G D                   ++ N
Sbjct: 116 GTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERERERERPSLAPVVNNN 175

Query: 141 WDDDQKIIQKMKLCKKYYNGEECPYGEKCSFLHEDPGKFRDDSGRFRESSAISIGTNGSP 200
           W+DDQKII +MKLC+K+  GEECPYG++C+F+HED  KFR+DSG+ RESS IS+G   + 
Sbjct: 176 WEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAAD 235

Query: 201 KSYGDGSNNSEGNSK-AVDTGSNISKGN-VKSTYWKTKLCIKWDKTGNCPFGEDCHFAHG 258
           +     SN  E N + ++   + ++ G  VK+ YWKT+LC+K+D TG CPFG+ CHFAHG
Sbjct: 236 QPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHG 295

Query: 259 EGELQVPGGRTEVESA-AVATLPKALSVAANEA-----TTTHAASETPMDEDEQAKKRLQ 312
           + EL    GR E E+  AVA++ K   V ANEA      T   A  + ++E+ + KK L 
Sbjct: 296 QAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLL 355

Query: 313 KWKINKKINRIYGDWIDDLPL 333
           KW  +KKINRIYGDWIDDLP+
Sbjct: 356 KWSDSKKINRIYGDWIDDLPV 376


>AT1G32360.1 | Symbols:  | Zinc finger (CCCH-type) family protein |
           chr1:11673325-11675162 FORWARD LENGTH=384
          Length = 384

 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 141/306 (46%), Gaps = 62/306 (20%)

Query: 81  RGTSHIFFKTRLCAKFRHGSCRNGETCNFAHGVDDMRQPPPNWQEIVGLR-----GGDER 135
           +    +FFKT+LC KFR G+C     CNFAH V+++R+PPPNWQEIV        GG   
Sbjct: 85  KAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGT 144

Query: 136 PLSGNWDDDQKIIQ---------------KMKLCKKYYNGEECPYGEKCSFLHEDPGKFR 180
           P     +  ++  Q               K + CKK+Y  E CPYGE C+FLH       
Sbjct: 145 PTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLH------- 197

Query: 181 DDSGRFRESSAISIGTNGSPKSYGDGSNNSEGNSKAVDTGSNISKGN-----------VK 229
           D++ R RES AIS+G  G     G GS           +   +  G            +K
Sbjct: 198 DEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSSNVVVLGGGGGSGSGSGIQILK 257

Query: 230 STYWKTKLCIKWDKTGNCPFGEDCHFAHGEGEL-QVPGGRTEVESA-AVATLPKALSVAA 287
            + WKT++C KW+ TG CPFG  CHFAHG  EL +  GG  E E    V+  P       
Sbjct: 258 PSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTVQ 317

Query: 288 NEA----TTTHAASETPMDEDEQ-----AKKRL-------------QKWKINKKINRIYG 325
           N      TTT  +   P + D       A +R              QKWK   KI+RIYG
Sbjct: 318 NPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSAVTQKPGIRTHQKWKGPAKISRIYG 377

Query: 326 DWIDDL 331
           DWIDD+
Sbjct: 378 DWIDDI 383


>AT2G35430.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr2:14901014-14902257 REVERSE LENGTH=252
          Length = 252

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 93/209 (44%), Gaps = 57/209 (27%)

Query: 150 KMKLCKKYYNGEECPY-GEKCSFLHE------------DPGKFRDDSGRFRESSAISIGT 196
           K KLC K+  G  CPY    C F H             +  +   ++ R RES A+S+G 
Sbjct: 73  KTKLCFKFRAGT-CPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLGP 131

Query: 197 NGSPKSYGDGSNNSEGNSKAVDTGSNISKGNVKSTYWKTKLCIKWDKTGNCPFGEDCHFA 256
            G                       N+++  +KS  WKT++C KW  TG CPFG  CHFA
Sbjct: 132 RG-----------------------NVAQ-TLKSPNWKTRICNKWQTTGYCPFGSHCHFA 167

Query: 257 HGEGELQVPG-----GRTEVESAA---------VATLPKALSVAANEATTTHAASETPMD 302
           HG  EL   G     G  ++ ++A         V T+   +S   +   T+ A ++ P  
Sbjct: 168 HGPSELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGVSSQRTSSAVTQKPNG 227

Query: 303 EDEQAKKRLQKWKINKKINRIYGDWIDDL 331
              Q     +KWK   KI+R+YGDWIDD+
Sbjct: 228 VRTQ-----RKWKGPDKISRVYGDWIDDI 251



 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 27/106 (25%)

Query: 87  FFKTRLCAKFRHGSC-RNGETCNFAHGVDDMR---QPPPNWQEIV--------------G 128
           FFKT+LC KFR G+C  +  +C+FAH  +++R    PPPNWQE V              G
Sbjct: 71  FFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLG 130

Query: 129 LRGGDERPL-SGNWDDDQKIIQKMKLCKKYYNGEECPYGEKCSFLH 173
            RG   + L S NW        K ++C K+     CP+G  C F H
Sbjct: 131 PRGNVAQTLKSPNW--------KTRICNKWQTTGYCPFGSHCHFAH 168


>AT1G68200.2 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:25562118-25563948 FORWARD LENGTH=307
          Length = 307

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 234 KTKLCIKWDKTGNCPFGEDCHFAHGEGEL----QVPGGRTEVESAAVA 277
           KT+LC KW +TG CP+G+ C FAHG  EL    + P  +TEV    +A
Sbjct: 223 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLA 270


>AT1G68200.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:25562118-25563948 FORWARD LENGTH=308
          Length = 308

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 234 KTKLCIKWDKTGNCPFGEDCHFAHGEGEL----QVPGGRTEVESAAVA 277
           KT+LC KW +TG CP+G+ C FAHG  EL    + P  +TEV    +A
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLA 271