Miyakogusa Predicted Gene

Lj4g3v1632030.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1632030.1 CUFF.49513.1
         (400 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47610.1 | Symbols:  | transcription regulators;zinc ion bind...   377   e-105

>AT3G47610.1 | Symbols:  | transcription regulators;zinc ion binding
           | chr3:17549178-17551204 FORWARD LENGTH=408
          Length = 408

 Score =  377 bits (968), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/393 (51%), Positives = 256/393 (65%), Gaps = 25/393 (6%)

Query: 3   SAGEWLEKALVELCSKIETGLGLGLDEEIIKGLVSYCNLAEPRDAKEYLDNIIGQEAGKA 62
           + G+WLE+ALV+LC K ETGL    D ++I GLVSYC+LA+P DAKEYLDNIIG+E GK+
Sbjct: 4   AVGQWLEEALVDLCRKPETGLNF--DRDVISGLVSYCDLAQPVDAKEYLDNIIGKE-GKS 60

Query: 63  VIEEYLQKRGYSESS---ASSNVPTTKLSAYVKPSSADISAIGSKKSNRAPKAVAVRGQD 119
           +I EYLQ+RGY + S   A+S+ P  +L  YVKP   + ++ G+KK  + PK        
Sbjct: 61  IIAEYLQRRGYKDPSSHVAASSGP--ELQMYVKPKVDNGASSGTKKPFKTPK-------- 110

Query: 120 AVPNKNEVNQTPASGSESRASQNGNQXXXXXXXXXXXXXLAEAAKGSIVFQQGRPCSCQA 179
                   NQ   +G  +  +Q   Q             LAEAAKGSIVFQQG+PC+CQA
Sbjct: 111 ---EGTSSNQQAGTGKLTAPAQ---QVNPKKKKGGKVISLAEAAKGSIVFQQGKPCACQA 164

Query: 180 RRHRLISNCLSCGKIVCEQEGEGPCNFCGALVLKEGSSYXXXXXXXXXXXXXXXXXXXXX 239
           RRH L+SNCLSCGKIVCEQEGEGPC+FCGALVLKEGS+Y                     
Sbjct: 165 RRHHLVSNCLSCGKIVCEQEGEGPCSFCGALVLKEGSTYAGLEVGYTPVSDADVAAEAYA 224

Query: 240 XRLVDYDRNSAARTTVIDDQSDYYEIDGNSWLSXXXXXXXXXXXXXXXXXXXXXXNRVVV 299
            RLV+YDRNSAARTTVIDDQSDYYE + ++WLS                      ++VV+
Sbjct: 225 KRLVEYDRNSAARTTVIDDQSDYYESESSTWLSAEEKELVRKKREEIEEAERVKKSKVVM 284

Query: 300 TFDLVGRKVLVNEDEVSELQPDNRILRPPDEREVNRIKPNPTLKIQPVFVDQGFSKK--- 356
           TFDL+GRKVL+NED++SEL+  NRIL PP+ + VNRIKPNPT ++ P+F+D G ++K   
Sbjct: 285 TFDLIGRKVLLNEDDISELESGNRILGPPETKNVNRIKPNPTARLVPIFLDPGPTEKKPN 344

Query: 357 SAKDRQPNKGLSKGMCLEISGRVQHDSNDLKYL 389
           S   ++ NK    G+CLEI+GRVQHD ++LKYL
Sbjct: 345 STTTKKDNKKNRNGLCLEITGRVQHDRSELKYL 377