Miyakogusa Predicted Gene

Lj4g3v1327420.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1327420.1 Non Chatacterized Hit- tr|G8A1U0|G8A1U0_MEDTR
Putative uncharacterized protein (Fragment)
OS=Medicag,46.58,0,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
Dimer_Tnp_hAT,HAT dimerisation; DUF4413,Domain of un,CUFF.48830.1
         (326 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...   155   3e-38
AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisati...    62   5e-10

>AT3G42170.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr3:14321838-14323928 FORWARD LENGTH=696
          Length = 696

 Score =  155 bits (393), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 152/301 (50%), Gaps = 14/301 (4%)

Query: 10  INTSTALCKDVPTRWNSTYMMLVSTLPYKNAFAKLHKYDDKYDIANSPTAEEWKRAQKLH 69
           + +   L  D  T+WN+TYMMLV+    K  F+ L   D  Y     P+AE+W+  + L 
Sbjct: 385 VPSEKVLSLDDQTQWNTTYMMLVAASELKEVFSCLDTADPDY--KKPPSAEDWRHVEALC 442

Query: 70  DFLKPFYTTTTLISDTSYPTANLYSMQVSKIKCAXXXXXXXXXXXXKAMATKMQKKFRKY 129
            FLKP +   + +  T  P+A  +  +V K +                +A  MQ+K  KY
Sbjct: 443 TFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQEKVDKY 502

Query: 130 WSVYSSVLAMGAALDPRVKLESLSYCFQKVDTSTFEIKLEVVKRNLYMLFEKYTSIHATS 189
           W   S VLAM   +DPR K++ + + F K+        ++ V   ++ LF +Y ++   S
Sbjct: 503 WRDCSLVLAMAVVMDPRFKMKLVEFSFSKIFGEDAGKNIKTVDDGIHELFTEYMAL--PS 560

Query: 190 MQNTSQTQRVSQDTEYDELDKHKKKVAMTQG---KSQLDLYFDEPSLSFGDNKDLDVLQW 246
            QNT+     S+  + D L      +  T G   KS+LD Y DE  L     ++ DVL W
Sbjct: 561 PQNTT-----SEGGKADGLSDFDTYIMETTGQNLKSELDQYLDETLLP--RVQEFDVLDW 613

Query: 247 WKENNSRFFELSIMARDLLCIPLTTVASESAFSIGSYVLNKYRSRLLSKNVEALMCAQNW 306
           WK+N  ++  LS MARD+L IP++  A +  F +    +++Y++ L  + VEAL+CA+ W
Sbjct: 614 WKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREW 673

Query: 307 L 307
           L
Sbjct: 674 L 674


>AT1G18560.1 | Symbols:  | BED zinc finger ;hAT family dimerisation
           domain | chr1:6385614-6388005 FORWARD LENGTH=690
          Length = 690

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 20/199 (10%)

Query: 116 KAMATKMQKKFRKYWSVYSSVLA-MGAALDPRVKLESLSYCFQKVDTSTFEIKLEVVKRN 174
           +  A  M +K R Y +   +V   + A LDPR+K E +       +T   E  ++  + +
Sbjct: 464 RTCAESMAQKARSYNTQVCNVFTYITAILDPRIKTEYIP------ETINLESYIDEARSH 517

Query: 175 LYMLFEKYTSIHATS-MQNTSQTQRVSQDTE----YDELDKHKKKVAMTQGK-SQLDLYF 228
                  Y+S H TS M +  + Q V +        +E+ + K++ +M+     +L  Y 
Sbjct: 518 F---IRNYSSSHFTSSMTSGYRPQEVDEGGGNISFAEEIARRKRRGSMSNNVVDELTQYL 574

Query: 229 DEPSLSFGDNKDLDVLQWWKENNSRFFELSIMARDLLCIPLTTVASESAFSIGSYVLNKY 288
            E  +        DVL WWK N+ R+  LS MARD L +  T+ A E  F      ++K 
Sbjct: 575 SESIVPM----QTDVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQ 630

Query: 289 RSRLLSKNVEALMCAQNWL 307
           +  +   + ++++C ++W+
Sbjct: 631 KYCMPHDSTQSVICIRSWI 649