Miyakogusa Predicted Gene
- Lj4g3v0934570.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v0934570.2 tr|B9GPD0|B9GPD0_POPTR GRAS family transcription
factor OS=Populus trichocarpa GN=GRAS59 PE=4
SV=1,47.15,4e-18,GRAS,Transcription factor GRAS; seg,NULL; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.48207.2
(310 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36710.1 | Symbols: | GRAS family transcription factor | chr... 202 4e-52
AT4G00150.1 | Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcri... 115 3e-26
AT2G45160.1 | Symbols: HAM1, ATHAM1, LOM1 | GRAS family transcri... 74 2e-13
AT3G60630.1 | Symbols: HAM2, ATHAM2, LOM2 | GRAS family transcri... 62 4e-10
AT5G41920.1 | Symbols: | GRAS family transcription factor | chr... 60 3e-09
AT3G54220.1 | Symbols: SCR, SGR1 | GRAS family transcription fac... 59 3e-09
AT4G08250.1 | Symbols: | GRAS family transcription factor | chr... 56 4e-08
AT5G48150.2 | Symbols: PAT1 | GRAS family transcription factor |... 54 1e-07
AT5G48150.1 | Symbols: PAT1 | GRAS family transcription factor |... 54 1e-07
AT2G01570.1 | Symbols: RGA1, RGA | GRAS family transcription fac... 53 2e-07
AT4G17230.1 | Symbols: SCL13 | SCARECROW-like 13 | chr4:9661218-... 52 3e-07
AT1G50420.1 | Symbols: SCL3, SCL-3 | scarecrow-like 3 | chr1:186... 52 5e-07
AT1G14920.1 | Symbols: GAI, RGA2 | GRAS family transcription fac... 50 2e-06
AT3G50650.1 | Symbols: | GRAS family transcription factor | chr... 50 3e-06
AT5G17490.1 | Symbols: RGL3 | RGA-like protein 3 | chr5:5764316-... 49 6e-06
AT5G66770.1 | Symbols: | GRAS family transcription factor | chr... 48 8e-06
>AT4G36710.1 | Symbols: | GRAS family transcription factor |
chr4:17306060-17307520 FORWARD LENGTH=486
Length = 486
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 124/245 (50%), Positives = 159/245 (64%), Gaps = 38/245 (15%)
Query: 80 LEDHVLPNLDWWDSIMKDLGLHDDSTTPLLKTNSDSS----------SLNSNPCLPEIYP 129
+++HV+ ++DW DSIMK+L L DDS LKT ++ +++SN LP +P
Sbjct: 28 MDEHVMRSMDW-DSIMKELELDDDSAPNSLKTGFTTTTTDSTILPLYAVDSN--LPG-FP 83
Query: 130 NQPFDQPQDFTSLSEIY--SNQSLAYNFTNTTTPSPSLDPSIHDFNPQTHNNNWDFIEEL 187
+Q QP DF S S++Y NQ+ Y F SLD N +DFIE+L
Sbjct: 84 DQI--QPSDFESSSDVYPGQNQTTGYGFN-------SLD--------SVDNGGFDFIEDL 126
Query: 188 IRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLLSGSNRTNAPPR 247
IR DC +S++LQLAQ +L RLNQRLRSP+G+PL RAAF+FK+AL S L+GSNR P R
Sbjct: 127 IRVVDCVESDELQLAQVVLSRLNQRLRSPAGRPLQRAAFYFKEALGSFLTGSNRN--PIR 184
Query: 248 LSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSL---FMHVVDFEIGLGIQ 304
LSS +EIVQ IR K +SGISPIP+FS FT NQA+L++L F+HVVDFEIG G Q
Sbjct: 185 LSSWSEIVQRIRAIKEYSGISPIPLFSHFTANQAILDSLSSQSSSPFVHVVDFEIGFGGQ 244
Query: 305 YASLM 309
YASLM
Sbjct: 245 YASLM 249
>AT4G00150.1 | Symbols: HAM3, ATHAM3, LOM3 | GRAS family
transcription factor | chr4:57429-59105 REVERSE
LENGTH=558
Length = 558
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 87/125 (69%), Gaps = 7/125 (5%)
Query: 185 EELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLLSGSNRTNA 244
E+L++AA+ +S+ LAQ IL RLNQ+L SP GKPL RAAF+FK+AL +LL ++T
Sbjct: 207 EQLVKAAEVIESDTC-LAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLHNVSQTLN 265
Query: 245 PPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDFEIGLGIQ 304
P L + I +K+FS ISP+ F+ FT+NQALLE+ HG +H++DF+IG G Q
Sbjct: 266 PYSL------IFKIAAYKSFSEISPVLQFANFTSNQALLESFHGFHRLHIIDFDIGYGGQ 319
Query: 305 YASLM 309
+ASLM
Sbjct: 320 WASLM 324
>AT2G45160.1 | Symbols: HAM1, ATHAM1, LOM1 | GRAS family
transcription factor | chr2:18618110-18620032 REVERSE
LENGTH=640
Length = 640
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 14/136 (10%)
Query: 184 IEELIRAADCF------DSNQLQLAQAILERLNQRLRSPSG--KPLHRAAFHFKDALQSL 235
IE+L AA+ + + LAQ IL RLN L + S P RAA H +AL SL
Sbjct: 269 IEQLFNAAELIGTTGNNNGDHTVLAQGILARLNHHLNTSSNHKSPFQRAASHIAEALLSL 328
Query: 236 LSGSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLF--MH 293
+ + P L + ++ I +++FS SP F FT NQ++LE+ + S F +H
Sbjct: 329 I----HNESSPPLITPENLILRIAAYRSFSETSPFLQFVNFTANQSILESCNESGFDRIH 384
Query: 294 VVDFEIGLGIQYASLM 309
++DF++G G Q++SLM
Sbjct: 385 IIDFDVGYGGQWSSLM 400
>AT3G60630.1 | Symbols: HAM2, ATHAM2, LOM2 | GRAS family
transcription factor | chr3:22410496-22412367 REVERSE
LENGTH=623
Length = 623
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 220 PLHRAAFHFKDALQSLLSGSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTN 279
P HRAA + +AL SLL + + +PP LS ++ I ++AFS SP F FT N
Sbjct: 291 PFHRAASYITEALHSLLQ--DSSLSPPSLSPPQNLIFRIAAYRAFSETSPFLQFVNFTAN 348
Query: 280 QALLEALHGSLFMHVVDFEIGLGIQYASLM 309
Q +LE+ G +H+VDF+IG G Q+ASL+
Sbjct: 349 QTILESFEGFDRIHIVDFDIGYGGQWASLI 378
>AT5G41920.1 | Symbols: | GRAS family transcription factor |
chr5:16779982-16781199 FORWARD LENGTH=405
Length = 405
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 187 LIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLLSGSNRTNAPP 246
L++ A+ ++ L+ A +L +++ + SP G R +F ALQ+ + S + A
Sbjct: 44 LLQCAEYVATDHLREASTLLSEISE-ICSPFGSSPERVVAYFAQALQTRVISSYLSGACS 102
Query: 247 RLSSM-AEIVQSIRIFKA---FSGISPIPMFSIFTTNQALLEALHGSLFMHVVDFEIGLG 302
LS +VQS +IF A ++ +SP+ FS FT NQA+ +AL G +H++D ++ G
Sbjct: 103 PLSEKPLTVVQSQKIFSALQTYNSVSPLIKFSHFTANQAIFQALDGEDSVHIIDLDVMQG 162
Query: 303 IQYASLM 309
+Q+ +L
Sbjct: 163 LQWPALF 169
>AT3G54220.1 | Symbols: SCR, SGR1 | GRAS family transcription factor
| chr3:20070550-20072625 FORWARD LENGTH=653
Length = 653
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 189 RAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLLSGSN---RTNAP 245
+ A+ ++ L+ A +L ++Q L +P G R A +F +A+ + L S P
Sbjct: 296 QCAEAVSADNLEEANKLLLEISQ-LSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALP 354
Query: 246 PRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDFEIGLGIQY 305
R ++ + F+ F+GISP+ FS FT NQA+ EA +H++D +I G+Q+
Sbjct: 355 SRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGLQW 414
Query: 306 ASL 308
L
Sbjct: 415 PGL 417
>AT4G08250.1 | Symbols: | GRAS family transcription factor |
chr4:5196787-5198238 FORWARD LENGTH=483
Length = 483
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Query: 154 NFTNTTTPSPSLDPSIHDFNPQT-HNNNWDFIEELIRAADCFDS--NQLQLAQAILERLN 210
N+ + S+ + P+T + + L+ AAD +L + IL RL
Sbjct: 74 GLCNSASTGLSVADGVSFGEPKTDESKGLRLVHLLVAAADASTGANKSRELTRVILARL- 132
Query: 211 QRLRSPSGKP-LHRAAFHFKDALQSLLSGSNRTNAPPRLSSMAEIVQSIRIFKAFSGISP 269
+ L SP + + R A HF + L LL + + + I F+ +SP
Sbjct: 133 KDLVSPGDRTNMERLAAHFTNGLSKLLERDSVLCPQQHRDDVYDQADVISAFELLQNMSP 192
Query: 270 IPMFSIFTTNQALLEALHGSLFMHVVDFEIGLGIQYASLM 309
F T QA+LEA+ +H+VD++I G+Q+ASLM
Sbjct: 193 YVNFGYLTATQAILEAVKYERRIHIVDYDINEGVQWASLM 232
>AT5G48150.2 | Symbols: PAT1 | GRAS family transcription factor |
chr5:19522497-19524053 REVERSE LENGTH=490
Length = 490
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 182 DFIEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLL--SGS 239
D +L+ A N L +A +++E+L Q + S SG+P+ R + + L + L SGS
Sbjct: 118 DLRADLVSCAKAMSENDLMMAHSMMEKLRQ-MVSVSGEPIQRLGAYLLEGLVAQLASSGS 176
Query: 240 NRTNAPPRLSSMA--EIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDF 297
+ A R A E++ + I + P F + N A+ EA+ +H++DF
Sbjct: 177 SIYKALNRCPEPASTELLSYMHILYE---VCPYFKFGYMSANGAIAEAMKEENRVHIIDF 233
Query: 298 EIGLGIQYASLM 309
+IG G Q+ +L+
Sbjct: 234 QIGQGSQWVTLI 245
>AT5G48150.1 | Symbols: PAT1 | GRAS family transcription factor |
chr5:19522497-19524053 REVERSE LENGTH=490
Length = 490
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 182 DFIEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLL--SGS 239
D +L+ A N L +A +++E+L Q + S SG+P+ R + + L + L SGS
Sbjct: 118 DLRADLVSCAKAMSENDLMMAHSMMEKLRQ-MVSVSGEPIQRLGAYLLEGLVAQLASSGS 176
Query: 240 NRTNAPPRLSSMA--EIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDF 297
+ A R A E++ + I + P F + N A+ EA+ +H++DF
Sbjct: 177 SIYKALNRCPEPASTELLSYMHILYE---VCPYFKFGYMSANGAIAEAMKEENRVHIIDF 233
Query: 298 EIGLGIQYASLM 309
+IG G Q+ +L+
Sbjct: 234 QIGQGSQWVTLI 245
>AT2G01570.1 | Symbols: RGA1, RGA | GRAS family transcription factor
family protein | chr2:255581-257344 REVERSE LENGTH=587
Length = 587
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 176 THNNNWDFIEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSL 235
+ N + L+ A+ N L LA+A+++++ S +G + + A +F +AL
Sbjct: 214 SQENGVRLVHALMACAEAIQQNNLTLAEALVKQIGCLAVSQAGA-MRKVATYFAEALARR 272
Query: 236 LSGSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVV 295
+ +PP+ + ++++ F P F+ FT NQA+LEA G +HV+
Sbjct: 273 I----YRLSPPQNQIDHCLSDTLQMH--FYETCPYLKFAHFTANQAILEAFEGKKRVHVI 326
Query: 296 DFEIGLGIQYASLM 309
DF + G+Q+ +LM
Sbjct: 327 DFSMNQGLQWPALM 340
>AT4G17230.1 | Symbols: SCL13 | SCARECROW-like 13 |
chr4:9661218-9662807 REVERSE LENGTH=529
Length = 529
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 46/239 (19%)
Query: 101 HDDSTTPLLKTNSDSSSLNSNPCLPEIY--PNQPFDQPQDFTSLSEIYSNQSLAYNFTNT 158
+D + + S S S C+ +++ P+ + P S SLAY+
Sbjct: 58 YDSPSVSITSGRSPFSPQGSQSCISDLHHSPDNVYGSPLSGVS--------SLAYDEAGV 109
Query: 159 TTPSPSLDPSI----------HDFNPQTHNN-NWDFI----------EELIRAADCFDSN 197
+ L+ S+ F+P + NWD + E L+ AA
Sbjct: 110 KSKIRELEVSLLSGDTKVEEFSGFSPAAGKSWNWDELLALTPQLDLKEVLVEAARAVADG 169
Query: 198 QLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLLSGSN-------RTNAPPRLSS 250
A L+ L Q + S SG P+ R + + L++ L GS + N P +
Sbjct: 170 DFATAYGFLDVLEQ-MVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEP----T 224
Query: 251 MAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDFEIGLGIQYASLM 309
E++ + + I P F+ T N +LEA+ G +H++DF+I G QY L+
Sbjct: 225 GRELMSYMSVLYE---ICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLI 280
>AT1G50420.1 | Symbols: SCL3, SCL-3 | scarecrow-like 3 |
chr1:18678177-18679625 REVERSE LENGTH=482
Length = 482
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 22/139 (15%)
Query: 183 FIEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDAL---------- 232
I L+ A+ S LQ A A LE+L+ L SP G + R A +F +AL
Sbjct: 54 LIHLLLTCANHVASGSLQNANAALEQLSH-LASPDGDTMQRIAAYFTEALANRILKSWPG 112
Query: 233 --QSLLSGSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSL 290
++L + RTN + + I + + F + PI S TN+A+LEA+ G
Sbjct: 113 LYKALNATQTRTN---------NVSEEIHVRRLFFEMFPILKVSYLLTNRAILEAMEGEK 163
Query: 291 FMHVVDFEIGLGIQYASLM 309
+HV+D + Q+ +L+
Sbjct: 164 MVHVIDLDASEPAQWLALL 182
>AT1G14920.1 | Symbols: GAI, RGA2 | GRAS family transcription factor
family protein | chr1:5149414-5151015 FORWARD LENGTH=533
Length = 533
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 176 THNNNWDFIEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSL 235
+ N + L+ A+ L +A+A+++++ S G + + A +F +AL
Sbjct: 162 SQENGVRLVHALLACAEAVQKENLTVAEALVKQIGFLAVSQIG-AMRKVATYFAEALARR 220
Query: 236 LSGSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVV 295
+ + + +P S+++ +Q F P F+ FT NQA+LEA G +HV+
Sbjct: 221 IYRLSPSQSPID-HSLSDTLQ-----MHFYETCPYLKFAHFTANQAILEAFQGKKRVHVI 274
Query: 296 DFEIGLGIQYASLM 309
DF + G+Q+ +LM
Sbjct: 275 DFSMSQGLQWPALM 288
>AT3G50650.1 | Symbols: | GRAS family transcription factor |
chr3:18806472-18808100 REVERSE LENGTH=542
Length = 542
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 215 SPSGKPLHRAAFHFKDALQSLLSGSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFS 274
S SG P+ R ++F +AL S++ P SS + + I +K + P F+
Sbjct: 203 SESGDPIQRVGYYFAEAL------SHKETESPSSSSSSSLEDFILSYKTLNDACPYSKFA 256
Query: 275 IFTTNQALLEALHGSLFMHVVDFEIGLGIQYASLM 309
T NQA+LEA + S +H+VDF I GIQ+++L+
Sbjct: 257 HLTANQAILEATNQSNNIHIVDFGIFQGIQWSALL 291
>AT5G17490.1 | Symbols: RGL3 | RGA-like protein 3 |
chr5:5764316-5765887 REVERSE LENGTH=523
Length = 523
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 183 FIEELIRAADCFDSNQLQLAQAILERLNQRLRSPSGKPLHRAAFHFKDALQSLLSGSNRT 242
++ L+ A+ L LA A+++R+ S +G + + A +F +AL + + +
Sbjct: 157 LVQALVACAEAVQLENLSLADALVKRVGLLAASQAG-AMGKVATYFAEALARRIYRIHPS 215
Query: 243 NAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDFEIGLG 302
A S EI+Q F P F+ FT NQA+LEA+ S +HV+D + G
Sbjct: 216 AAAID-PSFEEILQ-----MNFYDSCPYLKFAHFTANQAILEAVTTSRVVHVIDLGLNQG 269
Query: 303 IQYASLM 309
+Q+ +LM
Sbjct: 270 MQWPALM 276
>AT5G66770.1 | Symbols: | GRAS family transcription factor |
chr5:26660723-26662477 FORWARD LENGTH=584
Length = 584
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 14/148 (9%)
Query: 166 DPSIHDFNPQTHNNNWDFIEELIRAA-DCF---DSNQLQLAQAILERLNQRLRSPSGKPL 221
DP +D + ++++D L++A DC DS+ + ++ +L+ + S G P
Sbjct: 200 DPETND----SEDDDFDLEPPLLKAIYDCARISDSDPNEASKTLLQI--RESVSELGDPT 253
Query: 222 HRAAFHFKDALQSLLSGSNRTNAPPRLSSMAEIVQSIRIFKAFSGISPIPMFSIFTTNQA 281
R AF+F +AL + LS ++ + S+ I+ +K + P F+ T NQA
Sbjct: 254 ERVAFYFTEALSNRLSPNSPATSSSSSSTEDLILS----YKTLNDACPYSKFAHLTANQA 309
Query: 282 LLEALHGSLFMHVVDFEIGLGIQYASLM 309
+LEA S +H+VDF I GIQ+ +L+
Sbjct: 310 ILEATEKSNKIHIVDFGIVQGIQWPALL 337