Miyakogusa Predicted Gene

Lj4g3v0668290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0668290.1 Non Chatacterized Hit- tr|K4A2Q9|K4A2Q9_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,63.27,0.000000002,NusB,NusB/RsmB/TIM44; no
description,NusB/RsmB/TIM44; NusB-like,NusB/RsmB/TIM44,CUFF.47852.1
         (288 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26370.1 | Symbols:  | antitermination NusB domain-containing...   293   6e-80
AT4G26370.2 | Symbols:  | antitermination NusB domain-containing...   123   1e-28

>AT4G26370.1 | Symbols:  | antitermination NusB domain-containing
           protein | chr4:13334099-13336153 REVERSE LENGTH=301
          Length = 301

 Score =  293 bits (751), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 140/204 (68%), Positives = 169/204 (82%)

Query: 83  LPKVDKTGRFCSPRAARELALSIIYASCLEGLDPVRLFEKRLNERREAGYQFDQRKLLEY 142
           +PK+DK+GR  SPRAARELAL I+YA+CLEG DP+RLFEKR+N RRE GY+FD+  LLEY
Sbjct: 85  MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEY 144

Query: 143 NPMSFAGPPVTVQSEEEANELLRNIEKESDLEAEILSAPPKLVYNKLILRFTRKLLVAVR 202
           N MSF GPPV  +++EE +EL+R+ EKES +EAE+LSAPPKLVY+KL+LRF +KLL AV 
Sbjct: 145 NHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVV 204

Query: 203 DSWDSHVLVINKVVPPTWKDEPAGKILELSILHLAMSEMTKLETIHQIVINEAVDLAKRY 262
           D WDSHV++I K+ PP WK  PAG+ILE SILHLAMSE+  LET H IVINEAVDLAKR+
Sbjct: 205 DKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEVAVLETRHPIVINEAVDLAKRF 264

Query: 263 CDGASSRIINGCLRTFYRDTEKAS 286
           CDG++ RIINGCLRTF +D    S
Sbjct: 265 CDGSAPRIINGCLRTFVKDRATTS 288


>AT4G26370.2 | Symbols:  | antitermination NusB domain-containing
           protein | chr4:13334766-13336153 REVERSE LENGTH=248
          Length = 248

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 78/96 (81%)

Query: 83  LPKVDKTGRFCSPRAARELALSIIYASCLEGLDPVRLFEKRLNERREAGYQFDQRKLLEY 142
           +PK+DK+GR  SPRAARELAL I+YA+CLEG DP+RLFEKR+N RRE GY+FD+  LLEY
Sbjct: 85  MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEY 144

Query: 143 NPMSFAGPPVTVQSEEEANELLRNIEKESDLEAEIL 178
           N MSF GPPV  +++EE +EL+R+ EKES +   ++
Sbjct: 145 NHMSFGGPPVKTETKEEEDELVRHDEKESKIGRSLI 180