Miyakogusa Predicted Gene

Lj4g3v0450640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0450640.1 Non Chatacterized Hit- tr|J3MA39|J3MA39_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB05G3,45.59,9e-19,no
description,Rad21/Rec8-like protein, C-terminal; "Winged helix"
DNA-binding domain,NULL;
Rad21_Re,gene.Ljchr4_pseudomol_20120830.path1.gene1194.1
         (205 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like fami...    99   2e-21
AT5G05490.2 | Symbols: SYN1, DIF1 | Rad21/Rec8-like family prote...    99   3e-21

>AT5G05490.1 | Symbols: SYN1, ATREC8, REC8 | Rad21/Rec8-like family
           protein | chr5:1624325-1629144 FORWARD LENGTH=627
          Length = 627

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 94/168 (55%), Gaps = 24/168 (14%)

Query: 59  GGDSIHSFPGSVSEHGLSSNSG---GDKGRI-SKKRHSSSGNGSAGLKPVAEN------- 107
            GD + S P + S  G +S +      K R+ ++KR +SS     GL+PVAE        
Sbjct: 460 SGDDVRSMPSTPSARGAASINNIEISSKSRMPNRKRPNSSPR--RGLEPVAEERPWEHRE 517

Query: 108 AKFKLARVSEVGDPTPDQELLVETGPTQTQANI-DHPNEKIGDSIQAHMKAHFSTPGAP- 165
            +F+ + + E    T D+E+L ET  TQTQ  + +  +E I DSI++H+K HF TPGAP 
Sbjct: 518 YEFEFSMLPE-KRFTADKEILFETASTQTQKPVCNQSDEMITDSIKSHLKTHFETPGAPQ 576

Query: 166 --------AGMTRKSAAQLFYHTLVLVTGDALRGEQKEPYGDILISRG 205
                    GM R +AA+LF+ + VL T   ++  Q EPYGDILI+RG
Sbjct: 577 VESLNKLAVGMDRNAAAKLFFQSCVLATRGVIKVNQAEPYGDILIARG 624


>AT5G05490.2 | Symbols: SYN1, DIF1 | Rad21/Rec8-like family protein
           | chr5:1624712-1629144 FORWARD LENGTH=617
          Length = 617

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 94/168 (55%), Gaps = 24/168 (14%)

Query: 59  GGDSIHSFPGSVSEHGLSSNSG---GDKGRI-SKKRHSSSGNGSAGLKPVAEN------- 107
            GD + S P + S  G +S +      K R+ ++KR +SS     GL+PVAE        
Sbjct: 450 SGDDVRSMPSTPSARGAASINNIEISSKSRMPNRKRPNSSPR--RGLEPVAEERPWEHRE 507

Query: 108 AKFKLARVSEVGDPTPDQELLVETGPTQTQANI-DHPNEKIGDSIQAHMKAHFSTPGAP- 165
            +F+ + + E    T D+E+L ET  TQTQ  + +  +E I DSI++H+K HF TPGAP 
Sbjct: 508 YEFEFSMLPE-KRFTADKEILFETASTQTQKPVCNQSDEMITDSIKSHLKTHFETPGAPQ 566

Query: 166 --------AGMTRKSAAQLFYHTLVLVTGDALRGEQKEPYGDILISRG 205
                    GM R +AA+LF+ + VL T   ++  Q EPYGDILI+RG
Sbjct: 567 VESLNKLAVGMDRNAAAKLFFQSCVLATRGVIKVNQAEPYGDILIARG 614