Miyakogusa Predicted Gene

Lj4g3v0408380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v0408380.1 Non Chatacterized Hit- tr|D7KNJ5|D7KNJ5_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,28.97,3e-18,seg,NULL,CUFF.47053.1
         (348 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23850.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   117   1e-26
AT1G23840.1 | Symbols:  | unknown protein; LOCATED IN: endomembr...    93   2e-19
AT1G23830.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    66   5e-11

>AT1G23850.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G23840.1); Has 47 Blast hits to 40 proteins in
           5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:8425981-8427045 REVERSE
           LENGTH=354
          Length = 354

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 169/364 (46%), Gaps = 61/364 (16%)

Query: 10  QHEMEVLDILKEAVKVYVKNINFITFTIVTSLPFFCVMIYFELLFQKTVVEASEFLSQKT 69
           + ++  ++ILK A K+   NIN + F  + SLP FC +I+FEL  Q TV  AS++L ++ 
Sbjct: 4   EEDLGFINILKRATKLLCGNINLVLFLFLCSLPLFCFLIFFELSLQTTVSLASQYLVRQL 63

Query: 70  ADETVEVISLLLSEDKADFNYVHELGSFIDKIFSKDYLPVLIQLGFIYLVPLQVLELCSA 129
            +               D+ YV +  S ++ +     +P+LIQ   +YL P  +++L + 
Sbjct: 64  TN--------------WDYYYVPQDASVLENL-----IPLLIQTFLLYLFPYGLIDLFTT 104

Query: 130 ILTMDLASKLRSGDNNLSLTLKQMFQNSI-IDISIMKGTFITSLYMLFLSAYLLITFPWT 188
              +  +  + + +    L   Q+ + ++ I  + ++G  ITSLY+L LS  +   F + 
Sbjct: 105 TTIVSASWTVHTSEEE-PLRFGQLVRRTVEICQNRLEGCLITSLYVLLLSTPVFFGFLFV 163

Query: 189 LNNFYCL------------------SEAFGDY-----------IFSAIISLVCCLVLAKL 219
             N++ +                   +A G Y           +F A++++    +   L
Sbjct: 164 ATNYFHIISLTGSGENSYYYSINIEEDAEGYYRSSSVNSPVKMLFDAVLAMFHGAIFLGL 223

Query: 220 LMVYLEWSSILNMSIVISVLD------GIYGFGALRVSYAFSRGNQKRXXXXXXXXXXXX 273
           L ++ +WS+  NM +V+SVL+       IYG  AL +S  + +G++KR            
Sbjct: 224 LAMFSKWSAGWNMGLVVSVLEEEENGQSIYGTDALTLSSNYGKGHEKRGLQVMLVFLVFA 283

Query: 274 XXXXXXXXXXESYERGIGIFV-----QIGVLTVVNTLKWVSCMIYFYDCKKRTMEKKVDE 328
                     +  E   G  V      +G++ V N +KWV+C++++ DC+   +EKK D 
Sbjct: 284 IAMRMPCFCFKCTESSNGNRVLYTSFYVGLICVGNMIKWVACVVFYEDCRTSVLEKKGDV 343

Query: 329 ELGK 332
           E+G 
Sbjct: 344 EIGS 347


>AT1G23840.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane
           system; EXPRESSED IN: 18 plant structures; EXPRESSED
           DURING: 12 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G23850.1);
           Has 53 Blast hits to 48 proteins in 5 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:8424321-8425337 REVERSE LENGTH=338
          Length = 338

 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 161/362 (44%), Gaps = 61/362 (16%)

Query: 1   MESESKQVKQHEMEVLDILKEAVKVYVKNINFITFTIVTSLPFFCVMIYFELLFQKTVVE 60
           ME++S++    ++ V+++LK A+K+   NIN   F  + SLP FC +I+FEL  Q TV  
Sbjct: 1   METKSEE----KLSVIELLKRALKLLFGNINLALFLFLCSLPLFCFLIFFELSLQTTVSL 56

Query: 61  ASEFLSQKTADETVEVISLLLSEDKADFNYVHELGSFIDKIFSKDYLPVLIQLGFIYLVP 120
           AS ++S+    E          ED ++                 D LP LIQ   +Y  P
Sbjct: 57  ASTYISKLVNSE----------EDLSE----------------NDLLPWLIQTTLLYFFP 90

Query: 121 LQVLELCSAILTMDLASKLRSGDNNLSLTLKQMFQNSIIDISIMKGTFITSLYMLFLSAY 180
             +L+L +    +  +S   + +      L  + ++  +  + + G  ITSLY+L LS  
Sbjct: 91  YTILDLLTTTTIVAASSIAYTSEEEPLGLLYLVGRSFKLCQNKVGGCLITSLYVLLLSTS 150

Query: 181 LLIT-FPWTLNNFYCLSEAFGDYIF--SAIIS-----------------LVCCLVLAKLL 220
           + +  F  +    Y  S      IF   A++                  L+   V   L 
Sbjct: 151 VFLGLFSGSTIYLYFASLTLEQQIFFNQAVVQDQRFLEQAVVLLDVVVVLIHGTVFIVLA 210

Query: 221 MVYLEWSSILNMSIVISVLD------GIYGFGALRVSYAFSRGNQKRXXXXXXXXXXXXX 274
             + +WS+  N+S+V+SVL+      GIYG  AL +S  + RG +KR             
Sbjct: 211 AKFSKWSAGWNISMVVSVLEEEEDSKGIYGSSALSLSAWYLRGQEKRDFWMMLVFLVGAL 270

Query: 275 XXXXXXXXXESYE--RGIGIF---VQIGVLTVVNTLKWVSCMIYFYDCKKRTMEKKVDEE 329
                    +  E   G G+    + + ++ V N +KWVSC+++++DC  R + KK D E
Sbjct: 271 VTRMPCLYYKCSESLSGNGVLYTGLYVSLICVGNVVKWVSCVVWYHDCNTRVLRKKGDVE 330

Query: 330 LG 331
           +G
Sbjct: 331 IG 332


>AT1G23830.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 12 plant structures; EXPRESSED
           DURING: 9 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G23840.1);
           Has 57 Blast hits to 52 proteins in 7 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:8423003-8424040 REVERSE LENGTH=345
          Length = 345

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 161/366 (43%), Gaps = 57/366 (15%)

Query: 1   MESESKQVKQHEMEVLDILKEAVKVYVKNINFITFTIVTSLPFFCVMIYFELLFQKTVVE 60
           ME+ S++    ++ V+++LK A+K+   NIN + F  + SLP F  +I+FEL  Q TV  
Sbjct: 1   METNSEE----KLSVIELLKRALKLLFGNINLLLFLCLCSLPLFFFLIFFELSLQTTVYL 56

Query: 61  ASEFLSQKT--ADETVEVISLLLSEDKADFNYVHELGSFIDKIFSKDYLPVLIQLGFIYL 118
            S+FL +     ++  E   +L+SE K D                   +  LIQ   +Y 
Sbjct: 57  TSQFLWKLLILGEDLPENDLILISEKKNDL------------------ISWLIQTFLLYF 98

Query: 119 VPLQVLELCSAILTMDLASKLRSGDNNLSLTLKQMFQNSI-IDISIMKGTFITSLYMLFL 177
            P  +L+L +    +  +S + +      L L  + + SI I  + + G  ITSLY+L  
Sbjct: 99  FPYTILDLLTTTTIVAASSIVYTSKEE-PLGLLYLVERSIKICQNRVGGCLITSLYVLLW 157

Query: 178 SAYLL------------------ITFPWTLNNFYCLSEAFGDYIFSAIISLVC---CLVL 216
           S  +                   ++ P+ L+  Y         +F+ ++ L     C + 
Sbjct: 158 STSVFLFFFLFFFLQFLSGSTNYVSIPY-LSREYKGFHYQPTGLFNVVVPLTLLMQCTLF 216

Query: 217 AKLLMVYLEWSSILNMSIVISVLD------GIYGFGALRVSYAFSRGNQKRXXXXXXXXX 270
             L   Y +WSS  NM +V+SVL+      GIYG  AL +S  + +G++KR         
Sbjct: 217 IVLTAKYSKWSSGWNMGLVVSVLEEDEDGQGIYGGDALSLSGWYRKGHEKRDLWLMLMFL 276

Query: 271 XXXXXXXXXXXXXESYERGIGIFVQ---IGVLTVVNTLKWVSCMIYFYDCKKRTMEKKVD 327
                        +    G G+      +G++ V N LKWV+C+  ++DCK   + KK D
Sbjct: 277 VFGLATRMPCLYSKCSASGNGVMYTGFYVGLICVGNLLKWVTCLACYHDCKTMVLRKKRD 336

Query: 328 EELGKA 333
            E  K 
Sbjct: 337 VEQAKT 342